RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 OXLD1Q5BKU9 147 aa14.3□□□□□ -0.12
SQSTM1-209ENST00000504627 SGPP2Q8IWX5 399 aa14.3□□□□□ -0.12
SQSTM1-209ENST00000504627 LINC00311Q8N616 119 aa14.3□□□□□ -0.12
SQSTM1-209ENST00000504627 DRAM1Q8N682 238 aa14.3□□□□□ -0.12
SQSTM1-209ENST00000504627 ZNF431Q8TF32 576 aaPredicted RBP14.3□□□□□ -0.12
SQSTM1-209ENST00000504627 RTN4IP1Q8WWV3 396 aaPredicted RBP14.3□□□□□ -0.12
SQSTM1-209ENST00000504627 NAA60Q9H7X0 242 aa14.3□□□□□ -0.12
SQSTM1-209ENST00000504627 FAM90A9PA6NNJ1 464 aa14.29□□□□□ -0.12
SQSTM1-209ENST00000504627 IGLV2-14P01704 120 aa14.29□□□□□ -0.12
SQSTM1-209ENST00000504627 AMY1AP04745 511 aa14.29□□□□□ -0.12
SQSTM1-209ENST00000504627 TMEM11P17152 192 aa14.29□□□□□ -0.12
SQSTM1-209ENST00000504627 CD33P20138 364 aa14.29□□□□□ -0.12
SQSTM1-209ENST00000504627 VAMP1P23763 118 aa14.29□□□□□ -0.12
SQSTM1-209ENST00000504627 GPR12P47775 334 aa14.29□□□□□ -0.12
SQSTM1-209ENST00000504627 BCAP31P51572 246 aa14.29□□□□□ -0.12
SQSTM1-209ENST00000504627 HNF4GQ14541 408 aa14.29□□□□□ -0.12
SQSTM1-209ENST00000504627 KHDC1LQ5JSQ8 128 aa14.29□□□□□ -0.12
SQSTM1-209ENST00000504627 OR8H3Q8N146 312 aa14.29□□□□□ -0.12
SQSTM1-209ENST00000504627 GALNT14Q96FL9 552 aa14.29□□□□□ -0.12
SQSTM1-209ENST00000504627 SEC22CQ9BRL7 303 aa14.29□□□□□ -0.12
SQSTM1-209ENST00000504627 OR51J1Q9H342 316 aa14.29□□□□□ -0.12
SQSTM1-209ENST00000504627 PIPOXQ9P0Z9 390 aa14.29□□□□□ -0.12
SQSTM1-209ENST00000504627 GAB2Q9UQC2 676 aa14.29□□□□□ -0.12
SQSTM1-209ENST00000504627 TSSC4Q9Y5U2 329 aaPredicted RBP14.29□□□□□ -0.12
SQSTM1-209ENST00000504627 TEX13DA0A0J9YY54 714 aaPredicted RBP14.28□□□□□ -0.12
SQSTM1-209ENST00000504627 A0A1W2PPI3 338 aa14.28□□□□□ -0.12
SQSTM1-209ENST00000504627 C9orf170A2RU37 121 aa14.28□□□□□ -0.12
SQSTM1-209ENST00000504627 SLC31A2O15432 143 aa14.28□□□□□ -0.12
SQSTM1-209ENST00000504627 B3GALNT1O75752 331 aa14.28□□□□□ -0.12
SQSTM1-209ENST00000504627 SFT2D2O95562 160 aa14.28□□□□□ -0.12
SQSTM1-209ENST00000504627 PRB2P02812 416 aaPredicted RBP14.28□□□□□ -0.12
SQSTM1-209ENST00000504627 TRAPPC2P0DI81 140 aa14.28□□□□□ -0.12
SQSTM1-209ENST00000504627 TRAPPC2BP0DI82 140 aa14.28□□□□□ -0.12
SQSTM1-209ENST00000504627 SUPT4H1P63272 117 aaKnown RBP14.28□□□□□ -0.12
SQSTM1-209ENST00000504627 CBX3Q13185 183 aa14.28□□□□□ -0.12
SQSTM1-209ENST00000504627 DIAPH2-AS1Q14236 149 aa14.28□□□□□ -0.12
SQSTM1-209ENST00000504627 CT45A1Q5HYN5 189 aa14.28□□□□□ -0.12
SQSTM1-209ENST00000504627 KPRPQ5T749 579 aaPredicted RBP14.28□□□□□ -0.12
SQSTM1-209ENST00000504627 KCTD9Q7L273 389 aa14.28□□□□□ -0.12
SQSTM1-209ENST00000504627 CADM3Q8N126 398 aa14.28□□□□□ -0.12
SQSTM1-209ENST00000504627 CT45A3Q8NHU0 189 aa14.28□□□□□ -0.12
SQSTM1-209ENST00000504627 LIN7CQ9NUP9 197 aaKnown RBP14.28□□□□□ -0.12
SQSTM1-209ENST00000504627 RAB29O14966 203 aa14.27□□□□□ -0.13
SQSTM1-209ENST00000504627 MPPED1O15442 326 aa14.27□□□□□ -0.13
SQSTM1-209ENST00000504627 DUS4LO95620 317 aaKnown RBP14.27□□□□□ -0.13
SQSTM1-209ENST00000504627 IGKV1D-33P01593 117 aa14.27□□□□□ -0.13
SQSTM1-209ENST00000504627 IGKV1-33P01594 117 aa14.27□□□□□ -0.13
SQSTM1-209ENST00000504627 PF4P02776 101 aa14.27□□□□□ -0.13
SQSTM1-209ENST00000504627 GAPDHP04406 335 aaKnown RBP14.27□□□□□ -0.13
SQSTM1-209ENST00000504627 ANXA3P12429 323 aa14.27□□□□□ -0.13
SQSTM1-209ENST00000504627 ZNF134P52741 427 aa14.27□□□□□ -0.13
SQSTM1-209ENST00000504627 FAM71F2Q6NXP2 309 aa14.27□□□□□ -0.13
SQSTM1-209ENST00000504627 ZNF66Q6ZN08 573 aa14.27□□□□□ -0.13
SQSTM1-209ENST00000504627 MOB3BQ86TA1 216 aa14.27□□□□□ -0.13
SQSTM1-209ENST00000504627 TBC1D26Q86UD7 250 aa14.27□□□□□ -0.13
SQSTM1-209ENST00000504627 OR52B4Q8NGK2 314 aa14.27□□□□□ -0.13
SQSTM1-209ENST00000504627 CHAC2Q8WUX2 184 aa14.27□□□□□ -0.13
SQSTM1-209ENST00000504627 MITD1Q8WV92 249 aa14.27□□□□□ -0.13
SQSTM1-209ENST00000504627 C5orf30Q96GV9 206 aa14.27□□□□□ -0.13
SQSTM1-209ENST00000504627 ABHD14BQ96IU4 210 aa14.27□□□□□ -0.13
SQSTM1-209ENST00000504627 SDHAF2Q9NX18 166 aa14.27□□□□□ -0.13
SQSTM1-209ENST00000504627 SAA2-SAA4A0A096LPE2 208 aa14.26□□□□□ -0.13
SQSTM1-209ENST00000504627 A0A0B4J2A0 478 aa14.26□□□□□ -0.13
SQSTM1-209ENST00000504627 PSMB11A5LHX3 300 aa14.26□□□□□ -0.13
SQSTM1-209ENST00000504627 H0Y980 276 aa14.26□□□□□ -0.13
SQSTM1-209ENST00000504627 PGLYRP1O75594 196 aaPredicted RBP14.26□□□□□ -0.13
SQSTM1-209ENST00000504627 SAA2P0DJI9 122 aaPredicted RBP14.26□□□□□ -0.13
SQSTM1-209ENST00000504627 IL3RAP26951 378 aa14.26□□□□□ -0.13
SQSTM1-209ENST00000504627 REG1BP48304 166 aa14.26□□□□□ -0.13
SQSTM1-209ENST00000504627 ZNF137PP52743 207 aa14.26□□□□□ -0.13
SQSTM1-209ENST00000504627 RRAS2P62070 204 aaPredicted RBP14.26□□□□□ -0.13
SQSTM1-209ENST00000504627 SRPXP78539 464 aa14.26□□□□□ -0.13
SQSTM1-209ENST00000504627 CATR1Q13166 79 aa14.26□□□□□ -0.13
SQSTM1-209ENST00000504627 EIF4EBP1Q13541 118 aaPredicted RBP14.26□□□□□ -0.13
SQSTM1-209ENST00000504627 TCTEX1D4Q5JR98 221 aa14.26□□□□□ -0.13
SQSTM1-209ENST00000504627 C10orf99Q6UWK7 81 aa14.26□□□□□ -0.13
SQSTM1-209ENST00000504627 REC114Q7Z4M0 266 aa14.26□□□□□ -0.13
SQSTM1-209ENST00000504627 PHB2Q99623 299 aa14.26□□□□□ -0.13
SQSTM1-209ENST00000504627 HSD17B10Q99714 261 aaKnown RBP14.26□□□□□ -0.13
SQSTM1-209ENST00000504627 SHPKQ9UHJ6 478 aa14.26□□□□□ -0.13
SQSTM1-209ENST00000504627 RNF150Q9ULK6 438 aa14.26□□□□□ -0.13
SQSTM1-209ENST00000504627 KCNIP3Q9Y2W7 256 aa14.26□□□□□ -0.13
SQSTM1-209ENST00000504627 IGHV1-3A0A0C4DH29 117 aa14.25□□□□□ -0.13
SQSTM1-209ENST00000504627 FGF16O43320 207 aa14.25□□□□□ -0.13
SQSTM1-209ENST00000504627 SSNA1O43805 119 aa14.25□□□□□ -0.13
SQSTM1-209ENST00000504627 F2RP25116 425 aa14.25□□□□□ -0.13
SQSTM1-209ENST00000504627 ZNF816Q0VGE8 651 aaPredicted RBP14.25□□□□□ -0.13
SQSTM1-209ENST00000504627 ODF3L1Q8IXM7 274 aa14.25□□□□□ -0.13
SQSTM1-209ENST00000504627 C5orf56Q8N8D9 126 aa14.25□□□□□ -0.13
SQSTM1-209ENST00000504627 COQ8AQ8NI60 647 aa14.25□□□□□ -0.13
SQSTM1-209ENST00000504627 MED28Q9H204 178 aa14.25□□□□□ -0.13
SQSTM1-209ENST00000504627 IGHV3-72A0A0B4J1Y9 119 aa14.24□□□□□ -0.13
SQSTM1-209ENST00000504627 PIGBOS1A0A0B4J2F0 54 aa14.24□□□□□ -0.13
SQSTM1-209ENST00000504627 C3orf85A0A1B0GTC6 90 aa14.24□□□□□ -0.13
SQSTM1-209ENST00000504627 NCBP2LA6PVI3 153 aaKnown RBP14.24□□□□□ -0.13
SQSTM1-209ENST00000504627 TNFSF12O43508 249 aa14.24□□□□□ -0.13
SQSTM1-209ENST00000504627 OR5AC1P0C628 307 aa14.24□□□□□ -0.13
SQSTM1-209ENST00000504627 IGLL1P15814 213 aa14.24□□□□□ -0.13
SQSTM1-209ENST00000504627 ZNF833PQ6ZTB9 187 aa14.24□□□□□ -0.13
SQSTM1-209ENST00000504627 C12orf45Q8N5I9 185 aaPredicted RBP14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms