RNA–Protein interactions for RNA: ENST00000503427.5

HMGXB3-202, Transcript of HMG-box containing 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene HMGXB3, Length 5,275 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-202ENST00000503427 SPSB4Q96A44 273 aa13.78□□□□□ -0.2
HMGXB3-202ENST00000503427 ELOVL1Q9BW60 279 aa13.78□□□□□ -0.2
HMGXB3-202ENST00000503427 QTRT1Q9BXR0 403 aaKnown RBP13.78□□□□□ -0.2
HMGXB3-202ENST00000503427 EIF3GO75821 320 aaKnown RBP eCLIP13.78□□□□□ -0.2
HMGXB3-202ENST00000503427 PMCHL1Q16048 86 aa13.78□□□□□ -0.2
HMGXB3-202ENST00000503427 TMEM30BQ3MIR4 351 aa13.78□□□□□ -0.2
HMGXB3-202ENST00000503427 ZNF506Q5JVG8 444 aa13.78□□□□□ -0.2
HMGXB3-202ENST00000503427 OR5P3Q8WZ94 311 aa13.78□□□□□ -0.2
HMGXB3-202ENST00000503427 GPR61Q9BZJ8 451 aa13.78□□□□□ -0.2
HMGXB3-202ENST00000503427 MRPL18Q9H0U6 180 aaKnown RBP13.78□□□□□ -0.2
HMGXB3-202ENST00000503427 ZSWIM8A7E2V4 1837 aa13.78□□□□□ -0.2
HMGXB3-202ENST00000503427 TMEM250H0YL14 139 aa13.78□□□□□ -0.2
HMGXB3-202ENST00000503427 C8orf88P0DMB2 117 aa13.78□□□□□ -0.2
HMGXB3-202ENST00000503427 ZFP36L1Q07352 338 aaKnown RBP13.78□□□□□ -0.2
HMGXB3-202ENST00000503427 C1QL2Q7Z5L3 287 aa13.78□□□□□ -0.2
HMGXB3-202ENST00000503427 WDR31Q8NA23 367 aa13.78□□□□□ -0.2
HMGXB3-202ENST00000503427 C19orf24Q9BVV8 132 aa13.78□□□□□ -0.2
HMGXB3-202ENST00000503427 PARLQ9H300 379 aa13.78□□□□□ -0.2
HMGXB3-202ENST00000503427 ELOVL5Q9NYP7 299 aa13.78□□□□□ -0.2
HMGXB3-202ENST00000503427 KCNMB2Q9Y691 235 aa13.77□□□□□ -0.2
HMGXB3-202ENST00000503427 MSGN1A6NI15 193 aa13.77□□□□□ -0.2
HMGXB3-202ENST00000503427 ARL14EPLP0DKL9 152 aa13.77□□□□□ -0.2
HMGXB3-202ENST00000503427 C2orf68Q2NKX9 166 aa13.77□□□□□ -0.2
HMGXB3-202ENST00000503427 RBPMS2Q6ZRY4 209 aaKnown RBP13.77□□□□□ -0.2
HMGXB3-202ENST00000503427 ZNF646O15015 1829 aaPredicted RBP13.77□□□□□ -0.2
HMGXB3-202ENST00000503427 PGPA6NDG6 321 aa13.77□□□□□ -0.21
HMGXB3-202ENST00000503427 CSRP1P21291 193 aaKnown RBP13.77□□□□□ -0.21
HMGXB3-202ENST00000503427 NR2C2APQ86WQ0 139 aa13.77□□□□□ -0.21
HMGXB3-202ENST00000503427 DNAJC4Q9NNZ3 241 aa13.77□□□□□ -0.21
HMGXB3-202ENST00000503427 TCF19Q9Y242 345 aa13.77□□□□□ -0.21
HMGXB3-202ENST00000503427 TMEM189A5PLL7 270 aa13.77□□□□□ -0.21
HMGXB3-202ENST00000503427 COMPP49747 757 aaPredicted RBP13.77□□□□□ -0.21
HMGXB3-202ENST00000503427 ECSCRQ19T08 205 aa13.77□□□□□ -0.21
HMGXB3-202ENST00000503427 RNF115Q9Y4L5 304 aa13.77□□□□□ -0.21
HMGXB3-202ENST00000503427 KLRB1Q12918 225 aa13.77□□□□□ -0.21
HMGXB3-202ENST00000503427 TNFRSF19Q9NS68 423 aa13.77□□□□□ -0.21
HMGXB3-202ENST00000503427 METTL1Q9UBP6 276 aaKnown RBP13.77□□□□□ -0.21
HMGXB3-202ENST00000503427 IGKV1D-43A0A0B4J1Z2 117 aa13.76□□□□□ -0.21
HMGXB3-202ENST00000503427 RAMP1O60894 148 aa13.76□□□□□ -0.21
HMGXB3-202ENST00000503427 LINC00271P0C7V0 271 aa13.76□□□□□ -0.21
HMGXB3-202ENST00000503427 DDTP30046 118 aa13.76□□□□□ -0.21
HMGXB3-202ENST00000503427 EFNB1P98172 346 aa13.76□□□□□ -0.21
HMGXB3-202ENST00000503427 IZUMO4Q1ZYL8 232 aa13.76□□□□□ -0.21
HMGXB3-202ENST00000503427 SPANXN1Q5VSR9 72 aa13.76□□□□□ -0.21
HMGXB3-202ENST00000503427 ALPK2Q86TB3 2170 aa13.76□□□□□ -0.21
HMGXB3-202ENST00000503427 hCG_38984A0A1B0GV85 526 aa13.76□□□□□ -0.21
HMGXB3-202ENST00000503427 TRGC1P0CF51 173 aa13.76□□□□□ -0.21
HMGXB3-202ENST00000503427 IGFBP3P17936 291 aaPredicted RBP13.76□□□□□ -0.21
HMGXB3-202ENST00000503427 BTCP35070 178 aa13.76□□□□□ -0.21
HMGXB3-202ENST00000503427 TNFSF10P50591 281 aa13.76□□□□□ -0.21
HMGXB3-202ENST00000503427 KIR2DL2P43627 348 aaPredicted RBP13.76□□□□□ -0.21
HMGXB3-202ENST00000503427 PSMB2P49721 201 aa13.76□□□□□ -0.21
HMGXB3-202ENST00000503427 RND2P52198 227 aa13.76□□□□□ -0.21
HMGXB3-202ENST00000503427 FAM209BQ5JX69 171 aa13.76□□□□□ -0.21
HMGXB3-202ENST00000503427 OR4A5Q8NH83 315 aa13.76□□□□□ -0.21
HMGXB3-202ENST00000503427 PQLC2LA1A4F0 135 aa13.76□□□□□ -0.21
HMGXB3-202ENST00000503427 KLF7O75840 302 aaPredicted RBP13.76□□□□□ -0.21
HMGXB3-202ENST00000503427 AMY1AP04745 511 aa13.76□□□□□ -0.21
HMGXB3-202ENST00000503427 ATP5IP56385 69 aaPredicted RBP13.76□□□□□ -0.21
HMGXB3-202ENST00000503427 SRSF9Q13242 221 aaKnown RBP eCLIP13.76□□□□□ -0.21
HMGXB3-202ENST00000503427 FOXD3Q9UJU5 478 aaPredicted RBP13.76□□□□□ -0.21
HMGXB3-202ENST00000503427 J3KRW8 73 aa13.75□□□□□ -0.21
HMGXB3-202ENST00000503427 TIMM23BQ5SRD1 257 aa13.75□□□□□ -0.21
HMGXB3-202ENST00000503427 DMRT1Q9Y5R6 373 aa13.75□□□□□ -0.21
HMGXB3-202ENST00000503427 RNF222A6NCQ9 220 aa13.75□□□□□ -0.21
HMGXB3-202ENST00000503427 MGPP08493 103 aa13.75□□□□□ -0.21
HMGXB3-202ENST00000503427 HCP5Q6MZN7 132 aa13.75□□□□□ -0.21
HMGXB3-202ENST00000503427 RTBDNQ9BSG5 229 aaPredicted RBP13.75□□□□□ -0.21
HMGXB3-202ENST00000503427 COL25A1Q9BXS0 654 aaPredicted RBP13.75□□□□□ -0.21
HMGXB3-202ENST00000503427 PLSCR2Q9NRY7 297 aa13.75□□□□□ -0.21
HMGXB3-202ENST00000503427 AP5S1Q9NUS5 200 aa13.75□□□□□ -0.21
HMGXB3-202ENST00000503427 C1orf162Q8NEQ5 155 aaPredicted RBP13.75□□□□□ -0.21
HMGXB3-202ENST00000503427 RPRMQ9NS64 109 aa13.75□□□□□ -0.21
HMGXB3-202ENST00000503427 C5orf52A6NGY3 159 aa13.75□□□□□ -0.21
HMGXB3-202ENST00000503427 NTN3O00634 580 aaPredicted RBP13.75□□□□□ -0.21
HMGXB3-202ENST00000503427 SYNGR3O43761 229 aa13.75□□□□□ -0.21
HMGXB3-202ENST00000503427 CELA3AP09093 270 aa13.75□□□□□ -0.21
HMGXB3-202ENST00000503427 SNRPCP09234 159 aaKnown RBP13.75□□□□□ -0.21
HMGXB3-202ENST00000503427 STAG3L2P0CL84 134 aa13.75□□□□□ -0.21
HMGXB3-202ENST00000503427 SPATA45Q537H7 98 aa13.75□□□□□ -0.21
HMGXB3-202ENST00000503427 C17orf82Q86X59 251 aaPredicted RBP13.75□□□□□ -0.21
HMGXB3-202ENST00000503427 HSPB7Q9UBY9 170 aa13.75□□□□□ -0.21
HMGXB3-202ENST00000503427 IGLV3-32A0A0A0MS00 114 aa13.74□□□□□ -0.21
HMGXB3-202ENST00000503427 VENTXO95231 258 aa13.74□□□□□ -0.21
HMGXB3-202ENST00000503427 CLEC2AQ6UVW9 174 aa13.74□□□□□ -0.21
HMGXB3-202ENST00000503427 TRBV9A0A0B4J1U6 114 aa13.74□□□□□ -0.21
HMGXB3-202ENST00000503427 IGHV3-72A0A0B4J1Y9 119 aa13.74□□□□□ -0.21
HMGXB3-202ENST00000503427 ZNF729A6NN14 1252 aaPredicted RBP13.74□□□□□ -0.21
HMGXB3-202ENST00000503427 ZNF207O43670 478 aaKnown RBP13.74□□□□□ -0.21
HMGXB3-202ENST00000503427 UCP1P25874 307 aa13.74□□□□□ -0.21
HMGXB3-202ENST00000503427 PLAUP00749 431 aa13.74□□□□□ -0.21
HMGXB3-202ENST00000503427 RELBQ01201 579 aa13.74□□□□□ -0.21
HMGXB3-202ENST00000503427 ZNF738Q8NE65 137 aa13.74□□□□□ -0.21
HMGXB3-202ENST00000503427 SSTR5P35346 364 aa13.74□□□□□ -0.21
HMGXB3-202ENST00000503427 ZNF146Q15072 292 aa13.74□□□□□ -0.21
HMGXB3-202ENST00000503427 TWIST1Q15672 202 aa13.74□□□□□ -0.21
HMGXB3-202ENST00000503427 UQCR10Q9UDW1 63 aa13.74□□□□□ -0.21
HMGXB3-202ENST00000503427 NCOR1O75376 2440 aa13.73□□□□□ -0.21
HMGXB3-202ENST00000503427 TRAV14DV4A0A0A6YYC5 116 aa13.73□□□□□ -0.21
HMGXB3-202ENST00000503427 A0A1B0GTI1 187 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms