RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 ZNRF1Q8ND25 227 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 LHX4Q969G2 390 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 DCTN5Q9BTE1 182 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 PIEZO2Q9H5I5 2752 aa9.92□□□□□ -0.82
NUP54-202ENST00000502850 TRGV8A0A0C4DH27 118 aa9.92□□□□□ -0.82
NUP54-202ENST00000502850 A0A1W2PPE2 198 aa9.92□□□□□ -0.82
NUP54-202ENST00000502850 CYB5BO43169 146 aa9.92□□□□□ -0.82
NUP54-202ENST00000502850 ARG1P05089 322 aa9.92□□□□□ -0.82
NUP54-202ENST00000502850 SFTPCP11686 197 aa9.92□□□□□ -0.82
NUP54-202ENST00000502850 PSMB3P49720 205 aa9.92□□□□□ -0.82
NUP54-202ENST00000502850 OR2B8PP59922 312 aa9.92□□□□□ -0.82
NUP54-202ENST00000502850 RAB11AP62491 216 aa9.92□□□□□ -0.82
NUP54-202ENST00000502850 DLK1P80370 383 aa9.92□□□□□ -0.82
NUP54-202ENST00000502850 HOXA4Q00056 320 aaPredicted RBP9.92□□□□□ -0.82
NUP54-202ENST00000502850 HABP2Q14520 560 aaPredicted RBP9.92□□□□□ -0.82
NUP54-202ENST00000502850 ZNF726P1Q15940 193 aa9.92□□□□□ -0.82
NUP54-202ENST00000502850 ACOT6Q3I5F7 207 aaPredicted RBP9.92□□□□□ -0.82
NUP54-202ENST00000502850 LINC00518Q8N0U6 118 aa9.92□□□□□ -0.82
NUP54-202ENST00000502850 OR10A7Q8NGE5 316 aa9.92□□□□□ -0.82
NUP54-202ENST00000502850 CORO2AQ92828 525 aa9.92□□□□□ -0.82
NUP54-202ENST00000502850 QTRT1Q9BXR0 403 aaKnown RBP9.92□□□□□ -0.82
NUP54-202ENST00000502850 NPCDR1Q9BY65 106 aa9.92□□□□□ -0.82
NUP54-202ENST00000502850 LINC00574Q9H8X3 128 aa9.92□□□□□ -0.82
NUP54-202ENST00000502850 TMEM242Q9NWH2 141 aa9.92□□□□□ -0.82
NUP54-202ENST00000502850 IDI2-AS1Q9NZ38 188 aa9.92□□□□□ -0.82
NUP54-202ENST00000502850 GCN1Q92616 2671 aaKnown RBP9.91□□□□□ -0.82
NUP54-202ENST00000502850 hADV38S2A0JD32 116 aa9.91□□□□□ -0.82
NUP54-202ENST00000502850 J3QKU1 62 aa9.91□□□□□ -0.82
NUP54-202ENST00000502850 TGOLN2O43493 480 aa9.91□□□□□ -0.82
NUP54-202ENST00000502850 FAM87AP0C7U9 286 aa9.91□□□□□ -0.82
NUP54-202ENST00000502850 TDGF1P3P51864 188 aa9.91□□□□□ -0.82
NUP54-202ENST00000502850 FAM27E3Q08E93 113 aa9.91□□□□□ -0.82
NUP54-202ENST00000502850 C17orf58Q2M2W7 97 aa9.91□□□□□ -0.82
NUP54-202ENST00000502850 FFAR4Q5NUL3 377 aa9.91□□□□□ -0.82
NUP54-202ENST00000502850 FAM53AQ6NSI3 398 aaPredicted RBP9.91□□□□□ -0.82
NUP54-202ENST00000502850 ZNF788Q6ZQV5 615 aa9.91□□□□□ -0.82
NUP54-202ENST00000502850 C1orf87Q8N0U7 546 aa9.91□□□□□ -0.82
NUP54-202ENST00000502850 OR10G9Q8NGN4 311 aa9.91□□□□□ -0.82
NUP54-202ENST00000502850 OR10G7Q8NGN6 311 aa9.91□□□□□ -0.82
NUP54-202ENST00000502850 ZDHHC16Q969W1 377 aa9.91□□□□□ -0.82
NUP54-202ENST00000502850 VSIRQ9H7M9 311 aa9.91□□□□□ -0.82
NUP54-202ENST00000502850 NGBQ9NPG2 151 aa9.91□□□□□ -0.82
NUP54-202ENST00000502850 USF3Q68DE3 2245 aa9.9□□□□□ -0.82
NUP54-202ENST00000502850 C15orf62A8K5M9 175 aa9.9□□□□□ -0.82
NUP54-202ENST00000502850 TMEM250H0YL14 139 aa9.9□□□□□ -0.82
NUP54-202ENST00000502850 HRASP01112 189 aa9.9□□□□□ -0.82
NUP54-202ENST00000502850 S100A8P05109 93 aa9.9□□□□□ -0.82
NUP54-202ENST00000502850 OR9G9P0C7N8 305 aa9.9□□□□□ -0.82
NUP54-202ENST00000502850 MDKP21741 143 aaPredicted RBP9.9□□□□□ -0.82
NUP54-202ENST00000502850 AKR1D1P51857 326 aa9.9□□□□□ -0.82
NUP54-202ENST00000502850 MEF2BQ02080 365 aaPredicted RBP9.9□□□□□ -0.82
NUP54-202ENST00000502850 RBPJQ06330 500 aa9.9□□□□□ -0.82
NUP54-202ENST00000502850 FAM90A2PQ658T7 463 aa9.9□□□□□ -0.82
NUP54-202ENST00000502850 FAM24BQ8N5W8 94 aa9.9□□□□□ -0.82
NUP54-202ENST00000502850 CA5BP1Q8WTZ4 195 aa9.9□□□□□ -0.82
NUP54-202ENST00000502850 DDB2Q92466 427 aa9.9□□□□□ -0.82
NUP54-202ENST00000502850 ISOC2Q96AB3 205 aa9.9□□□□□ -0.82
NUP54-202ENST00000502850 GAFA1Q96PS6 74 aa9.9□□□□□ -0.82
NUP54-202ENST00000502850 TCEAL7Q9BRU2 100 aa9.9□□□□□ -0.82
NUP54-202ENST00000502850 CTDSP1Q9GZU7 261 aa9.9□□□□□ -0.82
NUP54-202ENST00000502850 GAL3ST2Q9H3Q3 398 aa9.9□□□□□ -0.82
NUP54-202ENST00000502850 HEYLQ9NQ87 328 aaPredicted RBP9.9□□□□□ -0.82
NUP54-202ENST00000502850 TMEM140Q9NV12 185 aa9.9□□□□□ -0.82
NUP54-202ENST00000502850 WDR83OSQ9Y284 106 aa9.9□□□□□ -0.82
NUP54-202ENST00000502850 HELZ2Q9BYK8 2649 aaKnown RBP9.9□□□□□ -0.82
NUP54-202ENST00000502850 DSCAML1Q8TD84 2053 aa9.9□□□□□ -0.82
NUP54-202ENST00000502850 ZNF462Q96JM2 2506 aa9.9□□□□□ -0.83
NUP54-202ENST00000502850 SMG1Q96Q15 3661 aaKnown RBP9.89□□□□□ -0.83
NUP54-202ENST00000502850 TRAV38-1A0A0B4J264 116 aa9.89□□□□□ -0.83
NUP54-202ENST00000502850 A0A0G2JNJ9 132 aa9.89□□□□□ -0.83
NUP54-202ENST00000502850 SMCO3A2RU48 225 aa9.89□□□□□ -0.83
NUP54-202ENST00000502850 C15orf61A6NNL5 157 aa9.89□□□□□ -0.83
NUP54-202ENST00000502850 CYB5R3P00387 301 aaPredicted RBP9.89□□□□□ -0.83
NUP54-202ENST00000502850 IFNA10P01566 189 aa9.89□□□□□ -0.83
NUP54-202ENST00000502850 DAOP14920 347 aa9.89□□□□□ -0.83
NUP54-202ENST00000502850 CD1BP29016 333 aa9.89□□□□□ -0.83
NUP54-202ENST00000502850 CCKARP32238 428 aa9.89□□□□□ -0.83
NUP54-202ENST00000502850 FGF8P55075 233 aaPredicted RBP9.89□□□□□ -0.83
NUP54-202ENST00000502850 MEF2CQ06413 473 aaPredicted RBP9.89□□□□□ -0.83
NUP54-202ENST00000502850 POU2AF1Q16633 256 aa9.89□□□□□ -0.83
NUP54-202ENST00000502850 TMEM249Q2WGJ8 235 aa9.89□□□□□ -0.83
NUP54-202ENST00000502850 RPL39P5Q59GN2 51 aa9.89□□□□□ -0.83
NUP54-202ENST00000502850 ACSM6Q6P461 480 aa9.89□□□□□ -0.83
NUP54-202ENST00000502850 GFRALQ6UXV0 394 aa9.89□□□□□ -0.83
NUP54-202ENST00000502850 HEPN1Q6WQI6 88 aa9.89□□□□□ -0.83
NUP54-202ENST00000502850 DOLPP1Q86YN1 238 aa9.89□□□□□ -0.83
NUP54-202ENST00000502850 RPP25LQ8N5L8 163 aaKnown RBP9.89□□□□□ -0.83
NUP54-202ENST00000502850 RAB1CQ92928 201 aa9.89□□□□□ -0.83
NUP54-202ENST00000502850 ABHD17AQ96GS6 310 aa9.89□□□□□ -0.83
NUP54-202ENST00000502850 YPEL4Q96NS1 127 aa9.89□□□□□ -0.83
NUP54-202ENST00000502850 ENY2Q9NPA8 101 aa9.89□□□□□ -0.83
NUP54-202ENST00000502850 Q9UFV3 132 aa9.89□□□□□ -0.83
NUP54-202ENST00000502850 FOXA2Q9Y261 457 aaPredicted RBP9.89□□□□□ -0.83
NUP54-202ENST00000502850 LINC00312Q9Y6C7 94 aa9.89□□□□□ -0.83
NUP54-202ENST00000502850 RAI1Q7Z5J4 1906 aaPredicted RBP9.89□□□□□ -0.83
NUP54-202ENST00000502850 CFAP46Q8IYW2 2715 aa9.89□□□□□ -0.83
NUP54-202ENST00000502850 SAA2-SAA4A0A096LPE2 208 aa9.89□□□□□ -0.83
NUP54-202ENST00000502850 C17orf100A8MU93 164 aa9.89□□□□□ -0.83
NUP54-202ENST00000502850 K7EM74 188 aa9.89□□□□□ -0.83
NUP54-202ENST00000502850 PROP1O75360 226 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 154.2 ms