RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 TNFSF10P50591 281 aa13.41□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 MEF2BQ02080 365 aaPredicted RBP13.41□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 CATR1Q13166 79 aa13.41□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 CTDSP1Q9GZU7 261 aa13.41□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 CXXC4Q9H2H0 198 aa13.41□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 SLC25A22Q9H936 323 aa13.41□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 OR5H1A6NKK0 313 aa13.41□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 LINC00473A8K010 186 aa13.41□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 CLDN14O95500 239 aa13.41□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 RPS16P62249 146 aaKnown RBP13.41□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 TFF3Q07654 80 aa13.41□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 TPRX1Q8N7U7 411 aa13.41□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 OR13A1Q8NGR1 328 aa13.41□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 GATAD1Q8WUU5 269 aa13.41□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 TRIB1Q96RU8 372 aa13.41□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 ZNF71Q9NQZ8 489 aaPredicted RBP13.41□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 NAT8Q9UHE5 227 aa13.41□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 CTXND1A0A1B0GTU2 59 aa13.4□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 IGHG3P01860 377 aa13.4□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 OPN1MWP04001 364 aa13.4□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 FAM87AP0C7U9 286 aa13.4□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 OPN1MW2P0DN77 364 aa13.4□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 OPN1MW3P0DN78 364 aa13.4□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 MDKP21741 143 aaPredicted RBP13.4□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 FGF7P21781 194 aa13.4□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 SSTR5P35346 364 aa13.4□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 GABRA2P47869 451 aa13.4□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 SOX8P57073 446 aa13.4□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 TLE1Q04724 770 aa13.4□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 VWC2Q2TAL6 325 aa13.4□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 CYP2G1PQ6ZSU1 146 aa13.4□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 SMIM7Q9BQ49 75 aa13.4□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 IGHV3-43A0A0B4J1X8 118 aa13.4□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.4□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 KBTBD11O94819 623 aa13.4□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 IGHV3-43DP0DP04 118 aa13.4□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 NKX6-1P78426 367 aaPredicted RBP13.4□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 COL10A1Q03692 680 aa13.4□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 OR10P1Q8NGE3 313 aa13.4□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 OR10G9Q8NGN4 311 aa13.4□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 OR10G7Q8NGN6 311 aa13.4□□□□□ -0.26
MSH5-SAPCD1-208ENST00000498473 CFAP46Q8IYW2 2715 aa13.39□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 TMEM238LA0A1B0GVL6 79 aa13.39□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 PPP1R2P9O14990 202 aa13.39□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 TGOLN2O43493 480 aa13.39□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 PFN1P07737 140 aaKnown RBP13.39□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 KIR2DL2P43627 348 aaPredicted RBP13.39□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 TMEM241Q24JQ0 296 aa13.39□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 VWA1Q6PCB0 445 aa13.39□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 NINJ1Q92982 152 aa13.39□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 FZR1Q9UM11 496 aa13.39□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 SNRPCP09234 159 aaKnown RBP13.39□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 COX5AP20674 150 aa13.39□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 RPL23P62829 140 aaKnown RBP13.39□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 ADIRFQ15847 76 aa13.39□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 SPINK9Q5DT21 86 aa13.39□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 FFAR4Q5NUL3 377 aa13.39□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 NCR3LG1Q68D85 454 aa13.39□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 C16orf82Q7Z2V1 217 aa13.39□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 TCTEX1D1Q8N7M0 179 aa13.39□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 RFESDQ8TAC1 157 aa13.39□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 TAAR6Q96RI8 345 aa13.39□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 DCTN5Q9BTE1 182 aa13.39□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 NPCDR1Q9BY65 106 aa13.39□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 TMEM250H0YL14 139 aa13.38□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 C15orf65H3BRN8 121 aa13.38□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 K7ENP7 123 aa13.38□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 KITLGP21583 273 aa13.38□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 PSMB3P49720 205 aa13.38□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 C4orf17Q53FE4 359 aa13.38□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 PDZD11Q5EBL8 140 aa13.38□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 ZNF66Q6ZN08 573 aa13.38□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 H2BFWTQ7Z2G1 175 aa13.38□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 CD177Q8N6Q3 437 aa13.38□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 Q8N7P7 452 aa13.38□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 CNEP1R1Q8N9A8 125 aa13.38□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 RPUSD4Q96CM3 377 aaKnown RBP13.38□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 PYGO2Q9BRQ0 406 aa13.38□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 MSL2Q9HCI7 577 aa13.38□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 DEFB108AA8MXU0 73 aa13.37□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 IFNL4K9M1U5 179 aa13.37□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 EREGO14944 169 aa13.37□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 PROP1O75360 226 aa13.37□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 CECR9P0C854 216 aa13.37□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 GNB2P62879 340 aa13.37□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 MRPS11P82912 194 aaKnown RBP13.37□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 C9orf106Q8NAJ2 232 aa13.37□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 CIB3Q96Q77 187 aaPredicted RBP13.37□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 ATG101Q9BSB4 218 aa13.37□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 TMEM208Q9BTX3 173 aa13.37□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 PSG11Q9UQ72 335 aa13.37□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 TIMM8AO60220 97 aaPredicted RBP13.37□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 FABP6P51161 128 aa13.37□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 FOXF2Q12947 444 aa13.37□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 BSXQ3C1V8 233 aa13.37□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 ACTR3CQ9C0K3 210 aaPredicted RBP13.37□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 PARLQ9H300 379 aa13.37□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 GAB2Q9UQC2 676 aa13.37□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 C15orf62A8K5M9 175 aa13.36□□□□□ -0.27
MSH5-SAPCD1-208ENST00000498473 DEFA4P12838 97 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms