RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 LTC4SQ16873 150 aa10.02□□□□□ -0.8
HDAC6-230ENST00000488543 ZNF585BQ52M93 769 aa10.02□□□□□ -0.8
HDAC6-230ENST00000488543 C11orf71Q6IPW1 123 aa10.02□□□□□ -0.8
HDAC6-230ENST00000488543 ZNF295-AS1Q8N0V1 137 aa10.02□□□□□ -0.8
HDAC6-230ENST00000488543 CLUHP3Q96NS8 147 aa10.02□□□□□ -0.8
HDAC6-230ENST00000488543 CBLN4Q9NTU7 201 aa10.02□□□□□ -0.8
HDAC6-230ENST00000488543 LYRM2Q9NU23 88 aaPredicted RBP10.02□□□□□ -0.8
HDAC6-230ENST00000488543 OR6C3Q9NZP0 311 aa10.02□□□□□ -0.8
HDAC6-230ENST00000488543 PPIAL4EA0A075B759 164 aa10.02□□□□□ -0.81
HDAC6-230ENST00000488543 TRAV38-1A0A0B4J264 116 aa10.02□□□□□ -0.81
HDAC6-230ENST00000488543 CLEC18AA5D8T8 446 aa10.02□□□□□ -0.81
HDAC6-230ENST00000488543 RBFOX3A6NFN3 312 aa10.02□□□□□ -0.81
HDAC6-230ENST00000488543 PPIAL4DF5H284 164 aa10.02□□□□□ -0.81
HDAC6-230ENST00000488543 NDUFS7O75251 213 aa10.02□□□□□ -0.81
HDAC6-230ENST00000488543 PITX3O75364 302 aa10.02□□□□□ -0.81
HDAC6-230ENST00000488543 IFNA4P05014 189 aa10.02□□□□□ -0.81
HDAC6-230ENST00000488543 PPIAL4FP0DN26 164 aa10.02□□□□□ -0.81
HDAC6-230ENST00000488543 IAPPP10997 89 aa10.02□□□□□ -0.81
HDAC6-230ENST00000488543 CDKN1AP38936 164 aa10.02□□□□□ -0.81
HDAC6-230ENST00000488543 UTF1Q5T230 341 aa10.02□□□□□ -0.81
HDAC6-230ENST00000488543 CYB561D1Q8N8Q1 229 aa10.02□□□□□ -0.81
HDAC6-230ENST00000488543 CLEC18CQ8NCF0 446 aa10.02□□□□□ -0.81
HDAC6-230ENST00000488543 ZBTB34Q8NCN2 500 aa10.02□□□□□ -0.81
HDAC6-230ENST00000488543 AGMATQ9BSE5 352 aa10.02□□□□□ -0.81
HDAC6-230ENST00000488543 VSIRQ9H7M9 311 aa10.02□□□□□ -0.81
HDAC6-230ENST00000488543 JPT1Q9UK76 154 aa10.02□□□□□ -0.81
HDAC6-230ENST00000488543 STRAPQ9Y3F4 350 aaKnown RBP10.02□□□□□ -0.81
HDAC6-230ENST00000488543 PPIAL4AQ9Y536 164 aa10.02□□□□□ -0.81
HDAC6-230ENST00000488543 IGHV1-69-2A0A0G2JMI3 117 aa10.01□□□□□ -0.81
HDAC6-230ENST00000488543 ST8SIA5O15466 376 aa10.01□□□□□ -0.81
HDAC6-230ENST00000488543 OR2C1O95371 312 aa10.01□□□□□ -0.81
HDAC6-230ENST00000488543 VDAC1P21796 283 aa10.01□□□□□ -0.81
HDAC6-230ENST00000488543 COL8A1P27658 744 aa10.01□□□□□ -0.81
HDAC6-230ENST00000488543 PAX9P55771 341 aa10.01□□□□□ -0.81
HDAC6-230ENST00000488543 B2MP61769 119 aa10.01□□□□□ -0.81
HDAC6-230ENST00000488543 RPL30P62888 115 aaKnown RBP10.01□□□□□ -0.81
HDAC6-230ENST00000488543 MORN2Q502X0 79 aa10.01□□□□□ -0.81
HDAC6-230ENST00000488543 Q6ZRM9 215 aa10.01□□□□□ -0.81
HDAC6-230ENST00000488543 C1orf87Q8N0U7 546 aa10.01□□□□□ -0.81
HDAC6-230ENST00000488543 RAB39BQ96DA2 213 aa10.01□□□□□ -0.81
HDAC6-230ENST00000488543 RSG1Q9BU20 258 aa10.01□□□□□ -0.81
HDAC6-230ENST00000488543 PLEKHF2Q9H8W4 249 aa10.01□□□□□ -0.81
HDAC6-230ENST00000488543 NIT2Q9NQR4 276 aa10.01□□□□□ -0.81
HDAC6-230ENST00000488543 SVEP1Q4LDE5 3571 aa10.01□□□□□ -0.81
HDAC6-230ENST00000488543 TRBV23-1A0A0A0MS06 115 aa10.01□□□□□ -0.81
HDAC6-230ENST00000488543 NKX6-3A6NJ46 265 aa10.01□□□□□ -0.81
HDAC6-230ENST00000488543 H3BQ15 152 aa10.01□□□□□ -0.81
HDAC6-230ENST00000488543 UBE2CO00762 179 aa10.01□□□□□ -0.81
HDAC6-230ENST00000488543 CLN5O75503 358 aa10.01□□□□□ -0.81
HDAC6-230ENST00000488543 YIF1AO95070 293 aa10.01□□□□□ -0.81
HDAC6-230ENST00000488543 FGF8P55075 233 aaPredicted RBP10.01□□□□□ -0.81
HDAC6-230ENST00000488543 CORO2AQ92828 525 aa10.01□□□□□ -0.81
HDAC6-230ENST00000488543 ABHD14BQ96IU4 210 aa10.01□□□□□ -0.81
HDAC6-230ENST00000488543 PBDC1Q9BVG4 233 aa10.01□□□□□ -0.81
HDAC6-230ENST00000488543 LIN7CQ9NUP9 197 aaKnown RBP10.01□□□□□ -0.81
HDAC6-230ENST00000488543 PSG11Q9UQ72 335 aa10.01□□□□□ -0.81
HDAC6-230ENST00000488543 NBPF19A0A087WUL8 3843 aa10.01□□□□□ -0.81
HDAC6-230ENST00000488543 YPEL1O60688 119 aa10□□□□□ -0.81
HDAC6-230ENST00000488543 CXCL1P09341 107 aa10□□□□□ -0.81
HDAC6-230ENST00000488543 RPS10P46783 165 aaKnown RBP10□□□□□ -0.81
HDAC6-230ENST00000488543 ICAM4Q14773 271 aa10□□□□□ -0.81
HDAC6-230ENST00000488543 SSX7Q7RTT5 188 aa10□□□□□ -0.81
HDAC6-230ENST00000488543 GPR146Q96CH1 333 aa10□□□□□ -0.81
HDAC6-230ENST00000488543 YPEL2Q96QA6 119 aa10□□□□□ -0.81
HDAC6-230ENST00000488543 LINC00574Q9H8X3 128 aa10□□□□□ -0.81
HDAC6-230ENST00000488543 KBTBD11-OT1A0A1B0GTJ5 212 aa10□□□□□ -0.81
HDAC6-230ENST00000488543 TMPRSS2O15393 492 aa10□□□□□ -0.81
HDAC6-230ENST00000488543 IGKV1-5P01602 117 aa10□□□□□ -0.81
HDAC6-230ENST00000488543 SERPINE2P07093 398 aa10□□□□□ -0.81
HDAC6-230ENST00000488543 BRWD1-AS2P59051 145 aa10□□□□□ -0.81
HDAC6-230ENST00000488543 SP5Q6BEB4 398 aaPredicted RBP10□□□□□ -0.81
HDAC6-230ENST00000488543 LYPD2Q6UXB3 125 aa10□□□□□ -0.81
HDAC6-230ENST00000488543 DTX2Q86UW9 622 aa10□□□□□ -0.81
HDAC6-230ENST00000488543 COMMD1Q8N668 190 aa10□□□□□ -0.81
HDAC6-230ENST00000488543 RNASE11Q8TAA1 199 aaKnown RBP10□□□□□ -0.81
HDAC6-230ENST00000488543 SPIN2AQ99865 258 aa10□□□□□ -0.81
HDAC6-230ENST00000488543 SPIN2BQ9BPZ2 258 aa10□□□□□ -0.81
HDAC6-230ENST00000488543 GNG12Q9UBI6 72 aa10□□□□□ -0.81
HDAC6-230ENST00000488543 CLN8Q9UBY8 286 aa10□□□□□ -0.81
HDAC6-230ENST00000488543 TRGV10A0A0A0MS01 117 aa9.99□□□□□ -0.81
HDAC6-230ENST00000488543 TGIF2-C20orf24A0A0A6YYL0 155 aa9.99□□□□□ -0.81
HDAC6-230ENST00000488543 RNF212BA8MTL3 300 aa9.99□□□□□ -0.81
HDAC6-230ENST00000488543 PROP1O75360 226 aa9.99□□□□□ -0.81
HDAC6-230ENST00000488543 SRP19P09132 144 aaKnown RBP9.99□□□□□ -0.81
HDAC6-230ENST00000488543 PLA2G2AP14555 144 aa9.99□□□□□ -0.81
HDAC6-230ENST00000488543 PPOXP50336 477 aa9.99□□□□□ -0.81
HDAC6-230ENST00000488543 ZNF134P52741 427 aa9.99□□□□□ -0.81
HDAC6-230ENST00000488543 RPS16P62249 146 aaKnown RBP9.99□□□□□ -0.81
HDAC6-230ENST00000488543 ARL16Q0P5N6 197 aa9.99□□□□□ -0.81
HDAC6-230ENST00000488543 ZNF266Q14584 549 aa9.99□□□□□ -0.81
HDAC6-230ENST00000488543 CDPF1Q6NVV7 123 aa9.99□□□□□ -0.81
HDAC6-230ENST00000488543 BTNL3Q6UXE8 466 aa9.99□□□□□ -0.81
HDAC6-230ENST00000488543 GFOD1Q9NXC2 390 aa9.99□□□□□ -0.81
HDAC6-230ENST00000488543 DOPEY2Q9Y3R5 2298 aa9.99□□□□□ -0.81
HDAC6-230ENST00000488543 SLC31A2O15432 143 aa9.99□□□□□ -0.81
HDAC6-230ENST00000488543 METTL15P1P0C7V9 234 aa9.99□□□□□ -0.81
HDAC6-230ENST00000488543 PAX6P26367 422 aa9.99□□□□□ -0.81
HDAC6-230ENST00000488543 TAGLN2P37802 199 aaKnown RBP9.99□□□□□ -0.81
HDAC6-230ENST00000488543 RAB5CP51148 216 aa9.99□□□□□ -0.81
HDAC6-230ENST00000488543 ID3Q02535 119 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms