RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 DMRT1Q9Y5R6 373 aa14.89□□□□□ -0.03
VIM-206ENST00000487938 BOD1L1Q8NFC6 3051 aa14.89□□□□□ -0.03
VIM-206ENST00000487938 HCFC1P51610 2035 aa14.89□□□□□ -0.03
VIM-206ENST00000487938 H7BYZ3 331 aa14.89□□□□□ -0.03
VIM-206ENST00000487938 GYPAP02724 150 aa14.89□□□□□ -0.03
VIM-206ENST00000487938 NPPCP23582 126 aa14.89□□□□□ -0.03
VIM-206ENST00000487938 ZNF83P51522 516 aa14.89□□□□□ -0.03
VIM-206ENST00000487938 ACOT6Q3I5F7 207 aaPredicted RBP14.89□□□□□ -0.03
VIM-206ENST00000487938 OR4A16Q8NH70 328 aa14.89□□□□□ -0.03
VIM-206ENST00000487938 LEAP2Q969E1 77 aa14.89□□□□□ -0.03
VIM-206ENST00000487938 PARD6AQ9NPB6 346 aa14.89□□□□□ -0.03
VIM-206ENST00000487938 HPRT1P00492 218 aa14.88□□□□□ -0.03
VIM-206ENST00000487938 DEFB109BQ30KR1 87 aa14.88□□□□□ -0.03
VIM-206ENST00000487938 C9orf152Q5JTZ5 239 aa14.88□□□□□ -0.03
VIM-206ENST00000487938 OR51G1Q8NGK1 321 aa14.88□□□□□ -0.03
VIM-206ENST00000487938 PATZ1Q9HBE1 687 aaKnown RBP14.88□□□□□ -0.03
VIM-206ENST00000487938 AURKAIP1Q9NWT8 199 aaPredicted RBP14.88□□□□□ -0.03
VIM-206ENST00000487938 CACNA1HO95180 2353 aa14.87□□□□□ -0.03
VIM-206ENST00000487938 SRRM5B3KS81 715 aa14.87□□□□□ -0.03
VIM-206ENST00000487938 C11orf94C9JXX5 98 aa14.87□□□□□ -0.03
VIM-206ENST00000487938 RRHO14718 337 aa14.87□□□□□ -0.03
VIM-206ENST00000487938 TGOLN2O43493 480 aa14.87□□□□□ -0.03
VIM-206ENST00000487938 CGAP01215 116 aa14.87□□□□□ -0.03
VIM-206ENST00000487938 TRAT1Q6PIZ9 186 aa14.87□□□□□ -0.03
VIM-206ENST00000487938 VHLLQ6RSH7 139 aa14.87□□□□□ -0.03
VIM-206ENST00000487938 IGFL2Q6UWQ7 119 aa14.87□□□□□ -0.03
VIM-206ENST00000487938 C1orf229Q6ZS94 237 aaPredicted RBP14.87□□□□□ -0.03
VIM-206ENST00000487938 GCSAMQ8N6F7 178 aa14.87□□□□□ -0.03
VIM-206ENST00000487938 NEIL1Q96FI4 390 aaPredicted RBP14.87□□□□□ -0.03
VIM-206ENST00000487938 MEGF10Q96KG7 1140 aa14.87□□□□□ -0.03
VIM-206ENST00000487938 OR5B12Q96R08 314 aa14.87□□□□□ -0.03
VIM-206ENST00000487938 PCGF1Q9BSM1 259 aa14.87□□□□□ -0.03
VIM-206ENST00000487938 SRD5A3Q9H8P0 318 aa14.87□□□□□ -0.03
VIM-206ENST00000487938 HEYLQ9NQ87 328 aaPredicted RBP14.87□□□□□ -0.03
VIM-206ENST00000487938 TUBG2Q9NRH3 451 aa14.87□□□□□ -0.03
VIM-206ENST00000487938 WDR83OSQ9Y284 106 aa14.87□□□□□ -0.03
VIM-206ENST00000487938 FAM201AQ5SY85 155 aa14.87□□□□□ -0.03
VIM-206ENST00000487938 MOGAT3Q86VF5 341 aa14.87□□□□□ -0.03
VIM-206ENST00000487938 FAM90A1Q86YD7 464 aa14.87□□□□□ -0.03
VIM-206ENST00000487938 ABHD12Q8N2K0 398 aa14.87□□□□□ -0.03
VIM-206ENST00000487938 SLC25A15Q9Y619 301 aa14.87□□□□□ -0.03
VIM-206ENST00000487938 SLC31A2O15432 143 aa14.86□□□□□ -0.03
VIM-206ENST00000487938 CST9LP1Q5W188 147 aa14.86□□□□□ -0.03
VIM-206ENST00000487938 SEM1Q6ZVN7 128 aa14.86□□□□□ -0.03
VIM-206ENST00000487938 SDSLQ96GA7 329 aa14.86□□□□□ -0.03
VIM-206ENST00000487938 OR2V2Q96R30 315 aa14.86□□□□□ -0.03
VIM-206ENST00000487938 TTC28Q96AY4 2481 aa14.86□□□□□ -0.03
VIM-206ENST00000487938 CADP27708 2225 aa14.86□□□□□ -0.03
VIM-206ENST00000487938 A0A1W2PPQ1 181 aa14.86□□□□□ -0.03
VIM-206ENST00000487938 M0R1B8 84 aa14.86□□□□□ -0.03
VIM-206ENST00000487938 SELLP14151 372 aa14.86□□□□□ -0.03
VIM-206ENST00000487938 ATP5G3P48201 142 aa14.86□□□□□ -0.03
VIM-206ENST00000487938 LOXL3P58215 753 aa14.86□□□□□ -0.03
VIM-206ENST00000487938 SPCS3P61009 180 aa14.86□□□□□ -0.03
VIM-206ENST00000487938 PYGO2Q9BRQ0 406 aa14.86□□□□□ -0.03
VIM-206ENST00000487938 ASCL3Q9NQ33 180 aa14.86□□□□□ -0.03
VIM-206ENST00000487938 A0A1W2PPV4 95 aa14.85□□□□□ -0.03
VIM-206ENST00000487938 AHRRA9YTQ3 701 aa14.85□□□□□ -0.03
VIM-206ENST00000487938 MGST3O14880 152 aa14.85□□□□□ -0.03
VIM-206ENST00000487938 SPRY3O43610 288 aa14.85□□□□□ -0.03
VIM-206ENST00000487938 YPEL1O60688 119 aa14.85□□□□□ -0.03
VIM-206ENST00000487938 MZT1Q08AG7 82 aa14.85□□□□□ -0.03
VIM-206ENST00000487938 YPEL2Q96QA6 119 aa14.85□□□□□ -0.03
VIM-206ENST00000487938 PFDN5Q99471 154 aa14.85□□□□□ -0.03
VIM-206ENST00000487938 JPT1Q9UK76 154 aa14.85□□□□□ -0.03
VIM-206ENST00000487938 A0A1B0GWJ7 208 aa14.85□□□□□ -0.03
VIM-206ENST00000487938 P2RY6Q15077 328 aa14.85□□□□□ -0.03
VIM-206ENST00000487938 TREML4Q6UXN2 200 aa14.85□□□□□ -0.03
VIM-206ENST00000487938 S1PR3Q99500 378 aa14.85□□□□□ -0.03
VIM-206ENST00000487938 HIST1H2BLQ99880 126 aa14.85□□□□□ -0.03
VIM-206ENST00000487938 PITPNC1Q9UKF7 332 aa14.85□□□□□ -0.03
VIM-206ENST00000487938 LAMA5O15230 3695 aa14.84□□□□□ -0.03
VIM-206ENST00000487938 TET2Q6N021 2002 aaPredicted RBP14.84□□□□□ -0.03
VIM-206ENST00000487938 PPP5D1E7EU14 171 aa14.84□□□□□ -0.03
VIM-206ENST00000487938 CHRNA7P36544 502 aa14.84□□□□□ -0.03
VIM-206ENST00000487938 GNB1P62873 340 aa14.84□□□□□ -0.03
VIM-206ENST00000487938 RELBQ01201 579 aa14.84□□□□□ -0.03
VIM-206ENST00000487938 PAX5Q02548 391 aa14.84□□□□□ -0.03
VIM-206ENST00000487938 PACRGQ96M98 296 aaPredicted RBP14.84□□□□□ -0.03
VIM-206ENST00000487938 DERL1Q9BUN8 251 aa14.84□□□□□ -0.03
VIM-206ENST00000487938 IFI27L2Q9H2X8 130 aa14.84□□□□□ -0.03
VIM-206ENST00000487938 MS4A5Q9H3V2 200 aa14.84□□□□□ -0.03
VIM-206ENST00000487938 HRASP01112 189 aa14.83□□□□□ -0.03
VIM-206ENST00000487938 VDAC2P45880 294 aaPredicted RBP14.83□□□□□ -0.03
VIM-206ENST00000487938 ERVK-16P61578 105 aa14.83□□□□□ -0.03
VIM-206ENST00000487938 DIRC2Q96SL1 478 aa14.83□□□□□ -0.03
VIM-206ENST00000487938 TMEM204Q9BSN7 226 aa14.83□□□□□ -0.03
VIM-206ENST00000487938 TMEM140Q9NV12 185 aa14.83□□□□□ -0.03
VIM-206ENST00000487938 GFOD1Q9NXC2 390 aa14.83□□□□□ -0.03
VIM-206ENST00000487938 NDUFB4O95168 129 aa14.83□□□□□ -0.04
VIM-206ENST00000487938 COL8A2P25067 703 aa14.83□□□□□ -0.04
VIM-206ENST00000487938 RPP30P78346 268 aaKnown RBP14.83□□□□□ -0.04
VIM-206ENST00000487938 MIC13Q5XKP0 118 aa14.83□□□□□ -0.04
VIM-206ENST00000487938 RPRMLQ8N4K4 120 aa14.83□□□□□ -0.04
VIM-206ENST00000487938 PPP1R35Q8TAP8 253 aa14.83□□□□□ -0.04
VIM-206ENST00000487938 TMEM170AQ8WVE7 144 aa14.83□□□□□ -0.04
VIM-206ENST00000487938 S100PBPQ96BU1 408 aa14.83□□□□□ -0.04
VIM-206ENST00000487938 ANAPC16Q96DE5 110 aa14.83□□□□□ -0.04
VIM-206ENST00000487938 MGST2Q99735 147 aa14.83□□□□□ -0.04
VIM-206ENST00000487938 PRDM13Q9H4Q3 707 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms