RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 SSX3Q99909 188 aa6.68□□□□□ -1.34
USP54-212ENST00000480210 AGMATQ9BSE5 352 aa6.68□□□□□ -1.34
USP54-212ENST00000480210 MFFQ9GZY8 342 aa6.68□□□□□ -1.34
USP54-212ENST00000480210 OR2W1Q9Y3N9 320 aa6.68□□□□□ -1.34
USP54-212ENST00000480210 A0A1W2PRD5 423 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 A0A1W2PRF3 423 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 A0A1W2PRM7 423 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 FAM90A9PA6NNJ1 464 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 ZNF736B4DX44 427 aaPredicted RBP6.67□□□□□ -1.34
USP54-212ENST00000480210 HSD17B6O14756 317 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 TUSC2O75896 110 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 IFNA17P01571 189 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 IFNA6P05013 189 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 FAM106CPP0CH98 169 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 PTHLHP12272 177 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 CXCL2P19875 107 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 CD1BP29016 333 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 S100A2P29034 98 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 MC5RP33032 325 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 ECI1P42126 302 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 GPR12P47775 334 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 DLX1P56177 255 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 SRSF4Q08170 494 aaKnown RBP6.67□□□□□ -1.34
USP54-212ENST00000480210 KLF9Q13886 244 aaPredicted RBP6.67□□□□□ -1.34
USP54-212ENST00000480210 HABP2Q14520 560 aaPredicted RBP6.67□□□□□ -1.34
USP54-212ENST00000480210 MEF2DQ14814 521 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 RBMS2Q15434 407 aaKnown RBP6.67□□□□□ -1.34
USP54-212ENST00000480210 VAX1Q5SQQ9 334 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 ZNF660Q6AZW8 331 aaPredicted RBP6.67□□□□□ -1.34
USP54-212ENST00000480210 ZNF833PQ6ZTB9 187 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 LHFPL4Q7Z7J7 247 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 MRPL52Q86TS9 123 aaKnown RBP6.67□□□□□ -1.34
USP54-212ENST00000480210 C1QL4Q86Z23 238 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 TGIF2LXQ8IUE1 241 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 ARRDC1Q8N5I2 433 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 KCNRGQ8N5I3 272 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 SIGLECL1Q8N7X8 197 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 OR52I2Q8NH67 350 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 UBALD1Q8TB05 177 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 RNF141Q8WVD5 230 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 MAFIPQ8WZ33 124 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 ADTRPQ96IZ2 230 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 AKR1E2Q96JD6 320 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 TMEM68Q96MH6 324 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 ZNF48Q96MX3 618 aaPredicted RBP6.67□□□□□ -1.34
USP54-212ENST00000480210 PFDN5Q99471 154 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 RNF5Q99942 180 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 KCNIP3Q9Y2W7 256 aa6.67□□□□□ -1.34
USP54-212ENST00000480210 TEP1Q99973 2627 aaKnown RBP6.67□□□□□ -1.34
USP54-212ENST00000480210 IGKV1D-8A0A087WSZ0 117 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 IGHV1-3A0A0C4DH29 117 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 SLC31A2O15432 143 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 BCL2L11O43521 198 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 NDUFB6O95139 128 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 CD74P04233 296 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 RNASE1P07998 156 aaKnown RBP6.66□□□□□ -1.34
USP54-212ENST00000480210 AKAIN1P0CW23 69 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 HKR1P10072 659 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 S100GP29377 79 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 FCGR2CP31995 323 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 UCP3P55916 312 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 BLOC1S1P78537 153 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 CYCSP99999 105 aaKnown RBP6.66□□□□□ -1.34
USP54-212ENST00000480210 EBI3Q14213 229 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 GNMTQ14749 295 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 RNASE10Q5GAN6 216 aaKnown RBP6.66□□□□□ -1.34
USP54-212ENST00000480210 ALKAL2Q6UX46 152 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 ACOT7LQ6ZUV0 252 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 ODF3L1Q8IXM7 274 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 ZNF645Q8N7E2 425 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 BPIFCQ8NFQ6 507 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 STOML3Q8TAV4 291 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 RTN4IP1Q8WWV3 396 aaPredicted RBP6.66□□□□□ -1.34
USP54-212ENST00000480210 C22orf15Q8WYQ4 148 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 LEAP2Q969E1 77 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 CXorf58Q96LI9 332 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 SCGB3A2Q96PL1 93 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 IFI27L2Q9H2X8 130 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 SMDT1Q9H4I9 107 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 EHFQ9NZC4 300 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 C1RLQ9NZP8 487 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 OR1A1Q9P1Q5 309 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 KLK11Q9UBX7 282 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 HILPDAQ9Y5L2 63 aa6.66□□□□□ -1.34
USP54-212ENST00000480210 ELOA3CA0A087WX78 387 aaPredicted RBP6.65□□□□□ -1.34
USP54-212ENST00000480210 SAA2-SAA4A0A096LPE2 208 aa6.65□□□□□ -1.34
USP54-212ENST00000480210 A0A1W2PPE3 182 aa6.65□□□□□ -1.34
USP54-212ENST00000480210 ANKRD20A5PA0PJZ0 165 aa6.65□□□□□ -1.34
USP54-212ENST00000480210 MEIS3P1A6NDR6 274 aa6.65□□□□□ -1.34
USP54-212ENST00000480210 OR5H14A6NHG9 310 aa6.65□□□□□ -1.34
USP54-212ENST00000480210 M0QZK8 103 aa6.65□□□□□ -1.34
USP54-212ENST00000480210 AP4M1O00189 453 aa6.65□□□□□ -1.34
USP54-212ENST00000480210 NUPL2O15504 423 aaKnown RBP6.65□□□□□ -1.34
USP54-212ENST00000480210 ARPC5O15511 151 aa6.65□□□□□ -1.34
USP54-212ENST00000480210 HOXA3O43365 443 aaPredicted RBP6.65□□□□□ -1.34
USP54-212ENST00000480210 RAB3DO95716 219 aa6.65□□□□□ -1.34
USP54-212ENST00000480210 PPYP01298 95 aa6.65□□□□□ -1.34
USP54-212ENST00000480210 IGHV3-7P01780 117 aa6.65□□□□□ -1.34
USP54-212ENST00000480210 PMP2P02689 132 aa6.65□□□□□ -1.34
USP54-212ENST00000480210 CRYBA1P05813 215 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms