RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 CCL1P22362 96 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 MAGEA2P43356 314 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 RPL26P61254 145 aaKnown RBP1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 ERHP84090 104 aaKnown RBP1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 PRDX4Q13162 271 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 RSU1Q15404 277 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 HSP90B2PQ58FF3 399 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 PABPC1L2AQ5JQF8 200 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 CDKL4Q5MAI5 379 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 C1orf194Q5T5A4 169 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 FAM78BQ5VT40 261 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 LRRN1Q6UXK5 716 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 SLC51BQ86UW2 128 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 UMODL1-AS1Q8N2C9 162 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 OR13C8Q8NGS7 320 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 OR2T27Q8NH04 317 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 OR5J2Q8NH18 312 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 JOSD2Q8TAC2 188 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 PIGXQ8TBF5 258 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 ZNF675Q8TD23 568 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 SPACA4Q8TDM5 124 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 GNPNAT1Q96EK6 184 aaPredicted RBP1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 FGFR1OP2Q9NVK5 253 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 USE1Q9NZ43 259 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 ANAPC10Q9UM13 185 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 RPL26L1Q9UNX3 145 aaKnown RBP1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 HHLA3Q9XRX5 114 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 COQ4Q9Y3A0 265 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 SCN9AQ15858 1988 aa1.04□□□□□ -2.24
CCDC88A-212ENST00000474059 MPDZO75970 2070 aa1.03□□□□□ -2.24
CCDC88A-212ENST00000474059 MUC16Q8WXI7 14507 aa1.03□□□□□ -2.24
CCDC88A-212ENST00000474059 TMSB15BA0A087X1C1 80 aa1.03□□□□□ -2.24
CCDC88A-212ENST00000474059 TRAV41A0A0B4J266 112 aa1.03□□□□□ -2.24
CCDC88A-212ENST00000474059 A0A1B0GVG6 124 aa1.03□□□□□ -2.24
CCDC88A-212ENST00000474059 ZNF860A6NHJ4 632 aa1.03□□□□□ -2.24
CCDC88A-212ENST00000474059 LRRN3E7EW58 273 aa1.03□□□□□ -2.24
CCDC88A-212ENST00000474059 SLC16A4O15374 487 aa1.03□□□□□ -2.24
CCDC88A-212ENST00000474059 UCHL1P09936 223 aa1.03□□□□□ -2.24
CCDC88A-212ENST00000474059 RPS12P25398 132 aaKnown RBP1.03□□□□□ -2.24
CCDC88A-212ENST00000474059 SLCO1A2P46721 670 aa1.03□□□□□ -2.24
CCDC88A-212ENST00000474059 REG1BP48304 166 aa1.03□□□□□ -2.24
CCDC88A-212ENST00000474059 RAP1GDS1P52306 607 aa1.03□□□□□ -2.24
CCDC88A-212ENST00000474059 FKBP1AP62942 108 aaKnown RBP1.03□□□□□ -2.24
CCDC88A-212ENST00000474059 LRRC75BQ2VPJ9 315 aa1.03□□□□□ -2.24
CCDC88A-212ENST00000474059 C1orf195Q5TG92 126 aa1.03□□□□□ -2.24
CCDC88A-212ENST00000474059 Q6ZTI0 123 aa1.03□□□□□ -2.24
CCDC88A-212ENST00000474059 OR51T1Q8NGJ9 327 aa1.03□□□□□ -2.24
CCDC88A-212ENST00000474059 ZNF625Q96I27 306 aaPredicted RBP1.03□□□□□ -2.24
CCDC88A-212ENST00000474059 C3orf18Q9UK00 162 aa1.03□□□□□ -2.24
CCDC88A-212ENST00000474059 AMMECR1Q9Y4X0 333 aaPredicted RBP1.03□□□□□ -2.24
CCDC88A-212ENST00000474059 RBM7Q9Y580 266 aaKnown RBP1.03□□□□□ -2.24
CCDC88A-212ENST00000474059 ZNF532Q9HCE3 1301 aa1.03□□□□□ -2.24
CCDC88A-212ENST00000474059 EVPLLA8MZ36 301 aa1.02□□□□□ -2.25
CCDC88A-212ENST00000474059 CA5AP35218 305 aa1.02□□□□□ -2.25
CCDC88A-212ENST00000474059 CCR2P41597 374 aa1.02□□□□□ -2.25
CCDC88A-212ENST00000474059 MAP2K4P45985 399 aa1.02□□□□□ -2.25
CCDC88A-212ENST00000474059 TAS2R20P59543 309 aa1.02□□□□□ -2.25
CCDC88A-212ENST00000474059 ZNF791Q3KP31 576 aaPredicted RBP1.02□□□□□ -2.25
CCDC88A-212ENST00000474059 OGFRL1Q5TC84 451 aaPredicted RBP1.02□□□□□ -2.25
CCDC88A-212ENST00000474059 OR10K2Q6IF99 312 aa1.02□□□□□ -2.25
CCDC88A-212ENST00000474059 C5orf46Q6UWT4 87 aa1.02□□□□□ -2.25
CCDC88A-212ENST00000474059 HIST2H3AQ71DI3 136 aa1.02□□□□□ -2.25
CCDC88A-212ENST00000474059 ZNF550Q7Z398 422 aa1.02□□□□□ -2.25
CCDC88A-212ENST00000474059 SGMS2Q8NHU3 365 aa1.02□□□□□ -2.25
CCDC88A-212ENST00000474059 LHFPL5Q8TAF8 219 aa1.02□□□□□ -2.25
CCDC88A-212ENST00000474059 RAB8BQ92930 207 aa1.02□□□□□ -2.25
CCDC88A-212ENST00000474059 TESCQ96BS2 214 aa1.02□□□□□ -2.25
CCDC88A-212ENST00000474059 MAP3K5Q99683 1374 aa1.02□□□□□ -2.25
CCDC88A-212ENST00000474059 OR51I2Q9H344 312 aa1.02□□□□□ -2.25
CCDC88A-212ENST00000474059 CXorf21Q9HAI6 301 aa1.02□□□□□ -2.25
CCDC88A-212ENST00000474059 COL4A1P02462 1669 aa1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 NUP160Q12769 1436 aa1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 EVC2Q86UK5 1308 aa1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 OR4C45A6NMZ5 311 aa1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 DISC1C4P0D8 188 aa1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 LST1O00453 97 aa1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 PLA2G10O15496 165 aa1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 KRT75O95678 551 aa1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 MYL12AP19105 171 aa1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 IDH3GP51553 393 aaPredicted RBP1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 AP2S1P53680 142 aaPredicted RBP1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 FXYD7P58549 80 aa1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 AP1S1P61966 158 aa1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 TNFAIP6P98066 277 aaPredicted RBP1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 MIAQ16674 131 aa1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 CLVS2Q5SYC1 327 aa1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 CD200R1LQ6Q8B3 271 aa1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 Q6ZRN7 208 aaPredicted RBP1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 LRRC28Q86X40 367 aaPredicted RBP1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 IQCF2Q8IXL9 164 aa1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 SLC22A24Q8N4F4 322 aa1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 GPR32P1Q8NGA4 272 aa1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 OR1L8Q8NGR8 309 aa1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 DIRAS2Q96HU8 199 aa1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 GPR84Q9NQS5 396 aa1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 XPNPEP1Q9NQW7 623 aa1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 FKBP14Q9NWM8 211 aa1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 PRELID1Q9Y255 219 aa1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 NOSIPQ9Y314 301 aaKnown RBP1.01□□□□□ -2.25
CCDC88A-212ENST00000474059 PXMP4Q9Y6I8 212 aa1.01□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 97.4 ms