RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 IKZF2Q9UKS7 526 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 MRPS16Q9Y3D3 137 aaKnown RBP3.13□□□□□ -1.91
HMGB1-207ENST00000468384 NUBP2Q9Y5Y2 271 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 LINC00312Q9Y6C7 94 aa3.13□□□□□ -1.91
HMGB1-207ENST00000468384 IGHV1-3A0A0C4DH29 117 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 SPRR5A0A1B0GTR4 108 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 EXOC1LA0A1B0GW35 172 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 RAB19A4D1S5 217 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 SIVA1O15304 175 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 CRTAPO75718 401 aaPredicted RBP3.12□□□□□ -1.91
HMGB1-207ENST00000468384 DIRAS1O95057 198 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 CGB3P0DN86 165 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 NQO2P16083 231 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 H2AFXP16104 143 aaPredicted RBP3.12□□□□□ -1.91
HMGB1-207ENST00000468384 CDK2P24941 298 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 ERVK-16P61578 105 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 CYCSP99999 105 aaKnown RBP3.12□□□□□ -1.91
HMGB1-207ENST00000468384 C2orf54Q08AI8 447 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 TMEM267Q0VDI3 215 aaPredicted RBP3.12□□□□□ -1.91
HMGB1-207ENST00000468384 FHL1Q13642 323 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 GNA13Q14344 377 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 KRTAP19-2Q3LHN2 52 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 TP53I3Q53FA7 332 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 KLHL12Q53G59 568 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 SASS6Q6UVJ0 657 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 REG3GQ6UW15 175 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 HEPN1Q6WQI6 88 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 RBM45Q8IUH3 476 aaKnown RBP3.12□□□□□ -1.91
HMGB1-207ENST00000468384 RDH10Q8IZV5 341 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 OR10H4Q8NGA5 316 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 OR4F6Q8NGB9 312 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 OR4D6Q8NGJ1 314 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 MRGPRDQ8TDS7 321 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 MRGPRFQ96AM1 343 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 SLC29A1Q99808 456 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 CST11Q9H112 138 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 THYN1Q9P016 225 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 MARCOQ9UEW3 520 aaPredicted RBP3.12□□□□□ -1.91
HMGB1-207ENST00000468384 FLVCR2Q9UPI3 526 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 CBY1Q9Y3M2 126 aa3.12□□□□□ -1.91
HMGB1-207ENST00000468384 A0A087X002 238 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 TRAV26-2A0A0B4J265 109 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 TEX48A0A1B0GUV7 120 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 TMEM213A2RRL7 107 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 PRSS37A4D1T9 235 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 GMNCA6NCL1 334 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 K7EQG2 157 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 ZNF593O00488 134 aaPredicted RBP3.11□□□□□ -1.91
HMGB1-207ENST00000468384 CCDC22O60826 627 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 FCGR3AP08637 254 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 UBCP0CG48 685 aaKnown RBP3.11□□□□□ -1.91
HMGB1-207ENST00000468384 CTLA4P16410 223 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 HMOX2P30519 316 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 FMO3P31513 532 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 RPL13AP40429 203 aaKnown RBP3.11□□□□□ -1.91
HMGB1-207ENST00000468384 ZNF92Q03936 586 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 ESRGQ1W209 222 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 RSPO1Q2MKA7 263 aaPredicted RBP3.11□□□□□ -1.91
HMGB1-207ENST00000468384 LY6G6FQ5SQ64 297 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 MUC21Q5SSG8 566 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 FAM222AQ5U5X8 452 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 UNQ5815/PRO19632Q6UWF5 114 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 FAM131AQ6UXB0 335 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 ERI1Q8IV48 349 aaKnown RBP3.11□□□□□ -1.91
HMGB1-207ENST00000468384 SAMD12Q8N8I0 201 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 AQP11Q8NBQ7 271 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 FBXO36Q8NEA4 188 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 OR1B1Q8NGR6 318 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 OR9G1Q8NH87 305 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 ROPN1LQ96C74 230 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 CABLES2Q9BTV7 478 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 TM2D1Q9BX74 207 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 ANKRD19PQ9H560 264 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 REEP4Q9H6H4 257 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 MEPEQ9NQ76 525 aaPredicted RBP3.11□□□□□ -1.91
HMGB1-207ENST00000468384 ZNF229Q9UJW7 825 aa3.11□□□□□ -1.91
HMGB1-207ENST00000468384 PUS1Q9Y606 427 aaKnown RBP eCLIP3.11□□□□□ -1.91
HMGB1-207ENST00000468384 OR4C46A6NHA9 309 aa3.1□□□□□ -1.91
HMGB1-207ENST00000468384 ZNF736B4DX44 427 aaPredicted RBP3.1□□□□□ -1.91
HMGB1-207ENST00000468384 MFNGO00587 321 aa3.1□□□□□ -1.91
HMGB1-207ENST00000468384 GFAPP14136 432 aa3.1□□□□□ -1.91
HMGB1-207ENST00000468384 MAP2K4P45985 399 aa3.1□□□□□ -1.91
HMGB1-207ENST00000468384 REG1BP48304 166 aa3.1□□□□□ -1.91
HMGB1-207ENST00000468384 DEFA5Q01523 94 aa3.1□□□□□ -1.91
HMGB1-207ENST00000468384 CD47Q08722 323 aa3.1□□□□□ -1.91
HMGB1-207ENST00000468384 FUT5Q11128 374 aa3.1□□□□□ -1.91
HMGB1-207ENST00000468384 STX3Q13277 289 aa3.1□□□□□ -1.91
HMGB1-207ENST00000468384 MED21Q13503 144 aa3.1□□□□□ -1.91
HMGB1-207ENST00000468384 EDDM3AQ14507 147 aa3.1□□□□□ -1.91
HMGB1-207ENST00000468384 SNAI3Q3KNW1 292 aa3.1□□□□□ -1.91
HMGB1-207ENST00000468384 ZNF876PQ49A33 203 aa3.1□□□□□ -1.91
HMGB1-207ENST00000468384 AKIRIN2Q53H80 203 aa3.1□□□□□ -1.91
HMGB1-207ENST00000468384 LINC00242Q5T6M2 205 aa3.1□□□□□ -1.91
HMGB1-207ENST00000468384 FAHD1Q6P587 224 aa3.1□□□□□ -1.91
HMGB1-207ENST00000468384 NOTCH2NLQ7Z3S9 236 aa3.1□□□□□ -1.91
HMGB1-207ENST00000468384 NAA40Q86UY6 237 aa3.1□□□□□ -1.91
HMGB1-207ENST00000468384 MSRB3Q8IXL7 192 aa3.1□□□□□ -1.91
HMGB1-207ENST00000468384 TPRX1Q8N7U7 411 aa3.1□□□□□ -1.91
HMGB1-207ENST00000468384 LRRC75AQ8NAA5 344 aa3.1□□□□□ -1.91
HMGB1-207ENST00000468384 OR5AK3PQ8NH89 298 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms