RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 C11orf52Q96A22 123 aa16.49■□□□□ 0.23
SDF4-205ENST00000465727 LRFN3Q9BTN0 628 aa16.49■□□□□ 0.23
SDF4-205ENST00000465727 RPS16P62249 146 aaKnown RBP16.48■□□□□ 0.23
SDF4-205ENST00000465727 GTF3C1Q12789 2109 aa16.48■□□□□ 0.23
SDF4-205ENST00000465727 ZNF718Q3SXZ3 478 aa16.48■□□□□ 0.23
SDF4-205ENST00000465727 LRP11Q86VZ4 500 aa16.48■□□□□ 0.23
SDF4-205ENST00000465727 NINJ1Q92982 152 aa16.48■□□□□ 0.23
SDF4-205ENST00000465727 UQCR10Q9UDW1 63 aa16.48■□□□□ 0.23
SDF4-205ENST00000465727 DIDO1Q9BTC0 2240 aaKnown RBP16.48■□□□□ 0.23
SDF4-205ENST00000465727 SNURFLB1AK76 121 aa16.47■□□□□ 0.23
SDF4-205ENST00000465727 DIRC3C9JPN6 131 aa16.47■□□□□ 0.23
SDF4-205ENST00000465727 C3orf80F5H4A9 247 aa16.47■□□□□ 0.23
SDF4-205ENST00000465727 CHRNB4P30926 498 aa16.47■□□□□ 0.23
SDF4-205ENST00000465727 FOLR3P41439 243 aa16.47■□□□□ 0.23
SDF4-205ENST00000465727 SUMO1P63165 101 aaKnown RBP16.47■□□□□ 0.23
SDF4-205ENST00000465727 PDLIM3Q53GG5 364 aaPredicted RBP16.47■□□□□ 0.23
SDF4-205ENST00000465727 DCAF12Q5T6F0 453 aa16.47■□□□□ 0.23
SDF4-205ENST00000465727 WDR73Q6P4I2 378 aa16.47■□□□□ 0.23
SDF4-205ENST00000465727 ZNF808Q8N4W9 903 aaPredicted RBP16.47■□□□□ 0.23
SDF4-205ENST00000465727 SCCPDHQ8NBX0 429 aa16.47■□□□□ 0.23
SDF4-205ENST00000465727 ASCL3Q9NQ33 180 aa16.47■□□□□ 0.23
SDF4-205ENST00000465727 FBXL7Q9UJT9 491 aa16.47■□□□□ 0.23
SDF4-205ENST00000465727 FREM1Q5H8C1 2179 aa16.47■□□□□ 0.23
SDF4-205ENST00000465727 USF3Q68DE3 2245 aa16.47■□□□□ 0.23
SDF4-205ENST00000465727 OOEPA6NGQ2 149 aa16.47■□□□□ 0.23
SDF4-205ENST00000465727 FAM90A9PA6NNJ1 464 aa16.47■□□□□ 0.23
SDF4-205ENST00000465727 NXPH2O95156 264 aa16.47■□□□□ 0.23
SDF4-205ENST00000465727 MT-CO2P00403 227 aa16.47■□□□□ 0.23
SDF4-205ENST00000465727 THBS3P49746 956 aa16.47■□□□□ 0.23
SDF4-205ENST00000465727 TMPRSS3P57727 454 aa16.47■□□□□ 0.23
SDF4-205ENST00000465727 KRTCAP3Q53RY4 240 aa16.47■□□□□ 0.23
SDF4-205ENST00000465727 C11orf42Q8N5U0 333 aa16.47■□□□□ 0.23
SDF4-205ENST00000465727 HSD17B10Q99714 261 aaKnown RBP16.47■□□□□ 0.23
SDF4-205ENST00000465727 SFXN3Q9BWM7 321 aa16.47■□□□□ 0.23
SDF4-205ENST00000465727 DNAJC4Q9NNZ3 241 aa16.47■□□□□ 0.23
SDF4-205ENST00000465727 MRPS17Q9Y2R5 130 aaKnown RBP16.47■□□□□ 0.23
SDF4-205ENST00000465727 CACNA1EQ15878 2313 aa16.46■□□□□ 0.23
SDF4-205ENST00000465727 KMT2EQ8IZD2 1858 aa16.46■□□□□ 0.23
SDF4-205ENST00000465727 TRGV10A0A0A0MS01 117 aa16.46■□□□□ 0.23
SDF4-205ENST00000465727 K7EN84 100 aa16.46■□□□□ 0.23
SDF4-205ENST00000465727 CDIPTO14735 213 aa16.46■□□□□ 0.23
SDF4-205ENST00000465727 IGHEP01854 428 aa16.46■□□□□ 0.23
SDF4-205ENST00000465727 REG1AP05451 166 aa16.46■□□□□ 0.23
SDF4-205ENST00000465727 IER3P46695 156 aa16.46■□□□□ 0.23
SDF4-205ENST00000465727 RPL31P62899 125 aaKnown RBP16.46■□□□□ 0.23
SDF4-205ENST00000465727 TREML4Q6UXN2 200 aa16.46■□□□□ 0.23
SDF4-205ENST00000465727 TUSC5Q8IXB3 177 aa16.46■□□□□ 0.23
SDF4-205ENST00000465727 Q8N976 141 aa16.46■□□□□ 0.23
SDF4-205ENST00000465727 C12orf77C9JDV5 145 aa16.46■□□□□ 0.22
SDF4-205ENST00000465727 SPINK2P20155 84 aa16.46■□□□□ 0.22
SDF4-205ENST00000465727 FOXG1P55316 489 aaPredicted RBP16.46■□□□□ 0.22
SDF4-205ENST00000465727 HLA-DRB5Q30154 266 aa16.46■□□□□ 0.22
SDF4-205ENST00000465727 MMD2Q8IY49 270 aa16.46■□□□□ 0.22
SDF4-205ENST00000465727 APH1AQ96BI3 265 aa16.46■□□□□ 0.22
SDF4-205ENST00000465727 UHRF2Q96PU4 802 aa16.46■□□□□ 0.22
SDF4-205ENST00000465727 DEPPQ9NTK1 212 aa16.46■□□□□ 0.22
SDF4-205ENST00000465727 MED12LQ86YW9 2145 aa16.45■□□□□ 0.22
SDF4-205ENST00000465727 J3QW42 95 aa16.45■□□□□ 0.22
SDF4-205ENST00000465727 GDF9O60383 454 aa16.45■□□□□ 0.22
SDF4-205ENST00000465727 KRTDAPP60985 99 aa16.45■□□□□ 0.22
SDF4-205ENST00000465727 SPATA45Q537H7 98 aa16.45■□□□□ 0.22
SDF4-205ENST00000465727 ANKRD39Q53RE8 183 aa16.45■□□□□ 0.22
SDF4-205ENST00000465727 SPATA46Q5T0L3 261 aa16.45■□□□□ 0.22
SDF4-205ENST00000465727 SLC35E4Q6ICL7 350 aa16.45■□□□□ 0.22
SDF4-205ENST00000465727 MCEMP1Q8IX19 187 aa16.45■□□□□ 0.22
SDF4-205ENST00000465727 ARL6IP6Q8N6S5 226 aa16.45■□□□□ 0.22
SDF4-205ENST00000465727 OR2M7Q8NG81 312 aa16.45■□□□□ 0.22
SDF4-205ENST00000465727 GGTLC1Q9BX51 225 aa16.45■□□□□ 0.22
SDF4-205ENST00000465727 ARL2-SNX15V9GYD0 113 aa16.45■□□□□ 0.22
SDF4-205ENST00000465727 SLC17A3O00476 420 aa16.44■□□□□ 0.22
SDF4-205ENST00000465727 ZNF253O75346 499 aa16.44■□□□□ 0.22
SDF4-205ENST00000465727 OR10J4P0C629 311 aa16.44■□□□□ 0.22
SDF4-205ENST00000465727 TDGF1P13385 188 aa16.44■□□□□ 0.22
SDF4-205ENST00000465727 PSG7Q13046 419 aa16.44■□□□□ 0.22
SDF4-205ENST00000465727 C21orf62-AS1Q17RA5 79 aa16.44■□□□□ 0.22
SDF4-205ENST00000465727 SPINK9Q5DT21 86 aa16.44■□□□□ 0.22
SDF4-205ENST00000465727 WDR86Q86TI4 376 aa16.44■□□□□ 0.22
SDF4-205ENST00000465727 ORAOV1Q8WV07 137 aa16.44■□□□□ 0.22
SDF4-205ENST00000465727 EAF1Q96JC9 268 aaPredicted RBP16.44■□□□□ 0.22
SDF4-205ENST00000465727 KCNS1Q96KK3 526 aa16.44■□□□□ 0.22
SDF4-205ENST00000465727 GNB4Q9HAV0 340 aa16.44■□□□□ 0.22
SDF4-205ENST00000465727 BOKQ9UMX3 212 aaPredicted RBP16.44■□□□□ 0.22
SDF4-205ENST00000465727 TBL2Q9Y4P3 447 aaKnown RBP16.44■□□□□ 0.22
SDF4-205ENST00000465727 YTHDF2Q9Y5A9 579 aaKnown RBP16.44■□□□□ 0.22
SDF4-205ENST00000465727 TCF21O43680 179 aa16.44■□□□□ 0.22
SDF4-205ENST00000465727 HAND1O96004 215 aa16.44■□□□□ 0.22
SDF4-205ENST00000465727 AREGP15514 252 aa16.44■□□□□ 0.22
SDF4-205ENST00000465727 HNF1AP20823 631 aa16.44■□□□□ 0.22
SDF4-205ENST00000465727 GCHFRP30047 84 aa16.44■□□□□ 0.22
SDF4-205ENST00000465727 HTD2P86397 168 aa16.44■□□□□ 0.22
SDF4-205ENST00000465727 OR52L2PQ8NGH6 319 aa16.44■□□□□ 0.22
SDF4-205ENST00000465727 MGST2Q99735 147 aa16.44■□□□□ 0.22
SDF4-205ENST00000465727 NRN1Q9NPD7 142 aa16.44■□□□□ 0.22
SDF4-205ENST00000465727 SDK1Q7Z5N4 2213 aa16.44■□□□□ 0.22
SDF4-205ENST00000465727 WDR87Q6ZQQ6 2873 aa16.43■□□□□ 0.22
SDF4-205ENST00000465727 F2Z2F3 143 aa16.43■□□□□ 0.22
SDF4-205ENST00000465727 HBZP02008 142 aa16.43■□□□□ 0.22
SDF4-205ENST00000465727 TFPI2P48307 235 aa16.43■□□□□ 0.22
SDF4-205ENST00000465727 CYB561P49447 251 aa16.43■□□□□ 0.22
SDF4-205ENST00000465727 OR1C1Q15619 314 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms