RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 CXCL2P19875 107 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 TSPOP30536 169 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 FABP6P51161 128 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 GPM6AP51674 278 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 SUB1P53999 127 aaKnown RBP eCLIP4.4□□□□□ -1.71
VPS41-209ENST00000457055 CCL23P55773 120 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 BACE1P56817 501 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 RND3P61587 244 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 RPS27AP62979 156 aaKnown RBP4.4□□□□□ -1.71
VPS41-209ENST00000457055 SLC25A11Q02978 314 aaKnown RBP4.4□□□□□ -1.71
VPS41-209ENST00000457055 PRDX4Q13162 271 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 IHHQ14623 411 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 PDGFRLQ15198 375 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 PRR30Q53SZ7 412 aaPredicted RBP4.4□□□□□ -1.71
VPS41-209ENST00000457055 TMEM244Q5VVB8 128 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 ALKAL2Q6UX46 152 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 APOOLQ6UXV4 268 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 FOXI2Q6ZQN5 318 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 Q6ZVH6 145 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 TMEM150AQ86TG1 271 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 TMEM139Q8IV31 216 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 C20orf196Q8IYI0 205 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 TTC9CQ8N5M4 171 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 OR2M3Q8NG83 312 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 OR52R1Q8NGF1 315 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 PSMF1Q92530 271 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 TMEM54Q969K7 222 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 ADAT3Q96EY9 351 aaPredicted RBP4.4□□□□□ -1.71
VPS41-209ENST00000457055 OR4C12Q96R67 309 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 PITX2Q99697 317 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 RTBDNQ9BSG5 229 aaPredicted RBP4.4□□□□□ -1.71
VPS41-209ENST00000457055 SPANXDQ9BXN6 97 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 SEC11CQ9BY50 192 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 TMEM133Q9H2Q1 129 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 EHFQ9NZC4 300 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 SIGLEC7Q9Y286 467 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 MED31Q9Y3C7 131 aa4.4□□□□□ -1.71
VPS41-209ENST00000457055 RALGAPA1Q6GYQ0 2036 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 NLRC5Q86WI3 1866 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 C7orf71A4D174 169 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 RIIAD1A6NNX1 92 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 TMEM178BH3BS89 294 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 H7BYZ3 331 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 NPFFO15130 113 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 TNFSF13O75888 250 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 LYPD3O95274 346 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 P01737 135 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 LGALS2P05162 132 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 OR4A8P0C604 315 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 SHC1P29353 583 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 TAF6P49848 677 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 APOC4P55056 127 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 SLC35A1P78382 337 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 CRADDP78560 199 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 HOXA4Q00056 320 aaPredicted RBP4.39□□□□□ -1.71
VPS41-209ENST00000457055 FAM27E3Q08E93 113 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 HMGN3Q15651 99 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 ZNF260Q3ZCT1 412 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 TECRLQ5HYJ1 363 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 FAM201AQ5SY85 155 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 IBA57Q5T440 356 aaKnown RBP4.39□□□□□ -1.71
VPS41-209ENST00000457055 OLFML2AQ68BL7 652 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 KCTD18Q6PI47 426 aaPredicted RBP4.39□□□□□ -1.71
VPS41-209ENST00000457055 ZNF550Q7Z398 422 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 LRP11Q86VZ4 500 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 PRR22Q8IZ63 422 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 NT5CQ8TCD5 201 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 CT55Q8WUE5 264 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 C9orf85Q96MD7 179 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 KXD1Q9BQD3 176 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 VAMP8Q9BV40 100 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 POLR2J3Q9H1A7 115 aaKnown RBP4.39□□□□□ -1.71
VPS41-209ENST00000457055 ATG5Q9H1Y0 275 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 BANF2Q9H503 90 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 ZNF629Q9UEG4 869 aaPredicted RBP4.39□□□□□ -1.71
VPS41-209ENST00000457055 SLC2A6Q9UGQ3 507 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 LAMTOR3Q9UHA4 124 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 POMPQ9Y244 141 aa4.39□□□□□ -1.71
VPS41-209ENST00000457055 YTHDF2Q9Y5A9 579 aaKnown RBP4.39□□□□□ -1.71
VPS41-209ENST00000457055 FANCMQ8IYD8 2048 aa4.38□□□□□ -1.71
VPS41-209ENST00000457055 MAST4O15021 2626 aa4.38□□□□□ -1.71
VPS41-209ENST00000457055 TMED7-TICAM2A0A0A6YYA0 188 aa4.38□□□□□ -1.71
VPS41-209ENST00000457055 A0A0B4J2A0 478 aa4.38□□□□□ -1.71
VPS41-209ENST00000457055 IGHV1-69-2A0A0G2JMI3 117 aa4.38□□□□□ -1.71
VPS41-209ENST00000457055 PRR32B1ATL7 298 aa4.38□□□□□ -1.71
VPS41-209ENST00000457055 FNDC10F2Z333 226 aa4.38□□□□□ -1.71
VPS41-209ENST00000457055 H0YJW9 148 aa4.38□□□□□ -1.71
VPS41-209ENST00000457055 K7EMT4 169 aa4.38□□□□□ -1.71
VPS41-209ENST00000457055 DPM2O94777 84 aa4.38□□□□□ -1.71
VPS41-209ENST00000457055 SPINK8P0C7L1 97 aa4.38□□□□□ -1.71
VPS41-209ENST00000457055 LINC00694P0DN24 101 aa4.38□□□□□ -1.71
VPS41-209ENST00000457055 LIFP15018 202 aa4.38□□□□□ -1.71
VPS41-209ENST00000457055 FABP4P15090 132 aa4.38□□□□□ -1.71
VPS41-209ENST00000457055 SLC18A1P54219 525 aa4.38□□□□□ -1.71
VPS41-209ENST00000457055 RBM11P57052 281 aaKnown RBP4.38□□□□□ -1.71
VPS41-209ENST00000457055 CFHR3Q02985 330 aa4.38□□□□□ -1.71
VPS41-209ENST00000457055 IL15RAQ13261 267 aa4.38□□□□□ -1.71
VPS41-209ENST00000457055 TMEM183BQ1AE95 376 aa4.38□□□□□ -1.71
VPS41-209ENST00000457055 LRRC10Q5BKY1 277 aa4.38□□□□□ -1.71
VPS41-209ENST00000457055 MEIG1Q5JSS6 88 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms