RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 CDS2O95674 445 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 KRASP01116 189 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 IER3P46695 156 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 EIF4EBP1Q13541 118 aaPredicted RBP8.12□□□□□ -1.11
CD44-207ENST00000425428 TMEM187Q14656 261 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 LY6EQ16553 131 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 MRPL41Q8IXM3 137 aaKnown RBP8.12□□□□□ -1.11
CD44-207ENST00000425428 DYNAPQ8N1N2 210 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 OR4A16Q8NH70 328 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 OR4A5Q8NH83 315 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 GLYATL2Q8WU03 294 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 CFHR4Q92496 578 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 TMEM230Q96A57 120 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 RHOVQ96L33 236 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 SLC25A33Q9BSK2 321 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 MED28Q9H204 178 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 TNFRSF19Q9NS68 423 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 SHPKQ9UHJ6 478 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 VPREB3Q9UKI3 123 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 TCF19Q9Y242 345 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 MOB4Q9Y3A3 225 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 TMED3Q9Y3Q3 217 aa8.12□□□□□ -1.11
CD44-207ENST00000425428 FAM90A9PA6NNJ1 464 aa8.11□□□□□ -1.11
CD44-207ENST00000425428 CYSRT1A8MQ03 144 aa8.11□□□□□ -1.11
CD44-207ENST00000425428 HOXA3O43365 443 aaPredicted RBP8.11□□□□□ -1.11
CD44-207ENST00000425428 TCF21O43680 179 aa8.11□□□□□ -1.11
CD44-207ENST00000425428 RAMP3O60896 148 aa8.11□□□□□ -1.11
CD44-207ENST00000425428 OR2A4O95047 310 aa8.11□□□□□ -1.11
CD44-207ENST00000425428 S1PR2O95136 353 aa8.11□□□□□ -1.11
CD44-207ENST00000425428 CNIH1O95406 144 aa8.11□□□□□ -1.11
CD44-207ENST00000425428 IGKV1-16P04430 117 aa8.11□□□□□ -1.11
CD44-207ENST00000425428 SPNP16150 400 aa8.11□□□□□ -1.11
CD44-207ENST00000425428 VDAC1P21796 283 aa8.11□□□□□ -1.11
CD44-207ENST00000425428 CD24P25063 80 aa8.11□□□□□ -1.11
CD44-207ENST00000425428 EBI3Q14213 229 aa8.11□□□□□ -1.11
CD44-207ENST00000425428 LDLRAD2Q5SZI1 272 aa8.11□□□□□ -1.11
CD44-207ENST00000425428 SSX9Q7RTT3 188 aa8.11□□□□□ -1.11
CD44-207ENST00000425428 TEX45Q8NA69 505 aa8.11□□□□□ -1.11
CD44-207ENST00000425428 MITD1Q8WV92 249 aa8.11□□□□□ -1.11
CD44-207ENST00000425428 C5orf30Q96GV9 206 aa8.11□□□□□ -1.11
CD44-207ENST00000425428 TMEM56Q96MV1 263 aa8.11□□□□□ -1.11
CD44-207ENST00000425428 RBM14Q96PK6 669 aaKnown RBP8.11□□□□□ -1.11
CD44-207ENST00000425428 OR2A7Q96R45 310 aa8.11□□□□□ -1.11
CD44-207ENST00000425428 CLCC1Q96S66 551 aa8.11□□□□□ -1.11
CD44-207ENST00000425428 OR51J1Q9H342 316 aa8.11□□□□□ -1.11
CD44-207ENST00000425428 PRDM13Q9H4Q3 707 aa8.11□□□□□ -1.11
CD44-207ENST00000425428 METTL1Q9UBP6 276 aaKnown RBP8.11□□□□□ -1.11
CD44-207ENST00000425428 TMEM56-RWDD3S4R434 201 aa8.11□□□□□ -1.11
CD44-207ENST00000425428 MDFIC2A0A1B0GVS7 189 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 C5orf51A6NDU8 294 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 FAM25EA8MYX2 175 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 FGF16O43320 207 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 VSIG10L2P0DP72 767 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 PAX6P26367 422 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 G6PCP35575 357 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 UBE2KP61086 200 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 SUPT4H1P63272 117 aaKnown RBP8.1□□□□□ -1.11
CD44-207ENST00000425428 MMD2Q8IY49 270 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 LRTM2Q8N967 370 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 OR52B4Q8NGK2 314 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 LSM10Q969L4 123 aaKnown RBP8.1□□□□□ -1.11
CD44-207ENST00000425428 SEC22CQ9BRL7 303 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 MMP24Q9Y5R2 645 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 ZNF469Q96JG9 3925 aaPredicted RBP8.1□□□□□ -1.11
CD44-207ENST00000425428 TRIM77I1YAP6 450 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 RRHO14718 337 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 SLC25A17O43808 307 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 IGHV4-59P01825 116 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 HOXB5P09067 269 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 LINC00205P59089 165 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 CYCSP99999 105 aaKnown RBP8.1□□□□□ -1.11
CD44-207ENST00000425428 GSG1LQ6UXU4 331 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 SELENOHQ8IZQ5 122 aaKnown RBP8.1□□□□□ -1.11
CD44-207ENST00000425428 SLC35G3Q8N808 338 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 NPBQ8NG41 125 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 ABHD5Q8WTS1 349 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 AJUBAQ96IF1 538 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 COMMD5Q9GZQ3 224 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 NPFFR1Q9GZQ6 430 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 RANBP3Q9H6Z4 567 aaPredicted RBP8.1□□□□□ -1.11
CD44-207ENST00000425428 ENY2Q9NPA8 101 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 TMEM140Q9NV12 185 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 BET1LQ9NYM9 111 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 PRNDQ9UKY0 176 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 ALG5Q9Y673 324 aa8.1□□□□□ -1.11
CD44-207ENST00000425428 CELSR1Q9NYQ6 3014 aa8.09□□□□□ -1.11
CD44-207ENST00000425428 HIVEP1P15822 2718 aa8.09□□□□□ -1.11
CD44-207ENST00000425428 C13orf42A0A1B0GVH6 325 aa8.09□□□□□ -1.11
CD44-207ENST00000425428 KCNAB3O43448 404 aa8.09□□□□□ -1.11
CD44-207ENST00000425428 KBTBD11O94819 623 aa8.09□□□□□ -1.11
CD44-207ENST00000425428 SULT1A3P0DMM9 295 aa8.09□□□□□ -1.11
CD44-207ENST00000425428 SULT1A4P0DMN0 295 aa8.09□□□□□ -1.11
CD44-207ENST00000425428 MAS1LP35410 378 aa8.09□□□□□ -1.11
CD44-207ENST00000425428 RPL15P61313 204 aaKnown RBP8.09□□□□□ -1.11
CD44-207ENST00000425428 ZNF585BQ52M93 769 aa8.09□□□□□ -1.11
CD44-207ENST00000425428 C9orf152Q5JTZ5 239 aa8.09□□□□□ -1.11
CD44-207ENST00000425428 PPP1R27Q86WC6 154 aa8.09□□□□□ -1.11
CD44-207ENST00000425428 TMEM219Q86XT9 240 aa8.09□□□□□ -1.11
CD44-207ENST00000425428 CADM3Q8N126 398 aa8.09□□□□□ -1.11
CD44-207ENST00000425428 OR1S1Q8NH92 325 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms