RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 MINOS1-NBL1R4GNA1 71 aa6.91□□□□□ -1.3
USP54-203ENST00000418501 ZGRF1Q86YA3 2104 aa6.91□□□□□ -1.3
USP54-203ENST00000418501 MYO7BQ6PIF6 2116 aa6.91□□□□□ -1.3
USP54-203ENST00000418501 COL8A2P25067 703 aa6.91□□□□□ -1.3
USP54-203ENST00000418501 LOXP28300 417 aaPredicted RBP6.91□□□□□ -1.3
USP54-203ENST00000418501 RPL8P62917 257 aaKnown RBP6.91□□□□□ -1.3
USP54-203ENST00000418501 DLK1P80370 383 aa6.91□□□□□ -1.3
USP54-203ENST00000418501 AANATQ16613 207 aa6.91□□□□□ -1.3
USP54-203ENST00000418501 ZNF833PQ6ZTB9 187 aa6.91□□□□□ -1.3
USP54-203ENST00000418501 THNSL2Q86YJ6 484 aa6.91□□□□□ -1.3
USP54-203ENST00000418501 C8orf46Q8TAG6 207 aa6.91□□□□□ -1.3
USP54-203ENST00000418501 EIF5A2Q9GZV4 153 aaKnown RBP6.91□□□□□ -1.3
USP54-203ENST00000418501 HRH4Q9H3N8 390 aa6.91□□□□□ -1.3
USP54-203ENST00000418501 SLC39A9Q9NUM3 307 aa6.91□□□□□ -1.3
USP54-203ENST00000418501 A0A1W2PPV4 95 aa6.91□□□□□ -1.3
USP54-203ENST00000418501 NXPH3O95157 252 aa6.91□□□□□ -1.3
USP54-203ENST00000418501 IGKV1-5P01602 117 aa6.91□□□□□ -1.3
USP54-203ENST00000418501 METTL15P1P0C7V9 234 aa6.91□□□□□ -1.3
USP54-203ENST00000418501 AKR1C1Q04828 323 aa6.91□□□□□ -1.3
USP54-203ENST00000418501 ZNF273Q14593 569 aa6.91□□□□□ -1.3
USP54-203ENST00000418501 TEX45Q8NA69 505 aa6.91□□□□□ -1.3
USP54-203ENST00000418501 CXorf58Q96LI9 332 aa6.91□□□□□ -1.3
USP54-203ENST00000418501 RNF2Q99496 336 aa6.91□□□□□ -1.3
USP54-203ENST00000418501 AGMATQ9BSE5 352 aa6.91□□□□□ -1.3
USP54-203ENST00000418501 SPTBN2O15020 2390 aa6.9□□□□□ -1.3
USP54-203ENST00000418501 A0A087X0M5 115 aa6.9□□□□□ -1.3
USP54-203ENST00000418501 A0A1B0GX30 115 aa6.9□□□□□ -1.3
USP54-203ENST00000418501 C15orf61A6NNL5 157 aa6.9□□□□□ -1.3
USP54-203ENST00000418501 UPK2O00526 184 aa6.9□□□□□ -1.3
USP54-203ENST00000418501 ZP3P21754 424 aa6.9□□□□□ -1.3
USP54-203ENST00000418501 NPY1RP25929 384 aa6.9□□□□□ -1.3
USP54-203ENST00000418501 TMEM267Q0VDI3 215 aaPredicted RBP6.9□□□□□ -1.3
USP54-203ENST00000418501 TMEM177Q53S58 311 aa6.9□□□□□ -1.3
USP54-203ENST00000418501 TMEM182Q6ZP80 229 aaPredicted RBP6.9□□□□□ -1.3
USP54-203ENST00000418501 Q6ZPA2 131 aa6.9□□□□□ -1.3
USP54-203ENST00000418501 PUSL1Q8N0Z8 303 aaKnown RBP6.9□□□□□ -1.3
USP54-203ENST00000418501 EIF4E3Q8N5X7 224 aaKnown RBP6.9□□□□□ -1.3
USP54-203ENST00000418501 TCF19Q9Y242 345 aa6.9□□□□□ -1.3
USP54-203ENST00000418501 FGF7P21781 194 aa6.9□□□□□ -1.3
USP54-203ENST00000418501 COX7A1P24310 79 aa6.9□□□□□ -1.3
USP54-203ENST00000418501 SVBPQ8N300 66 aa6.9□□□□□ -1.3
USP54-203ENST00000418501 SLC24A4Q8NFF2 622 aa6.9□□□□□ -1.3
USP54-203ENST00000418501 WDR87Q6ZQQ6 2873 aa6.9□□□□□ -1.31
USP54-203ENST00000418501 TFF1P04155 84 aa6.9□□□□□ -1.31
USP54-203ENST00000418501 ARG1P05089 322 aa6.9□□□□□ -1.31
USP54-203ENST00000418501 SELLP14151 372 aa6.9□□□□□ -1.31
USP54-203ENST00000418501 CCL3L1P16619 93 aa6.9□□□□□ -1.31
USP54-203ENST00000418501 NHLH2Q02577 135 aa6.9□□□□□ -1.31
USP54-203ENST00000418501 FAM168AQ92567 244 aa6.9□□□□□ -1.31
USP54-203ENST00000418501 A0A1W2PPE3 182 aa6.9□□□□□ -1.31
USP54-203ENST00000418501 SNAPINO95295 136 aa6.9□□□□□ -1.31
USP54-203ENST00000418501 CFDP00746 253 aaPredicted RBP6.9□□□□□ -1.31
USP54-203ENST00000418501 GRNP28799 593 aaKnown RBP6.9□□□□□ -1.31
USP54-203ENST00000418501 RPL30P62888 115 aaKnown RBP6.9□□□□□ -1.31
USP54-203ENST00000418501 TFF3Q07654 80 aa6.9□□□□□ -1.31
USP54-203ENST00000418501 HNF4GQ14541 408 aa6.9□□□□□ -1.31
USP54-203ENST00000418501 OR4A47Q6IF82 309 aa6.9□□□□□ -1.31
USP54-203ENST00000418501 IGHV2-26A0A0B4J1V2 119 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 IGSF23A1L1A6 192 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 MSGN1A6NI15 193 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 FNDC10F2Z333 226 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 H3BP45 60 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 FGF16O43320 207 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 DANCRP0C864 163 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 SPP1P10451 314 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 ATP5J2P56134 94 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 HLA-DRB5Q30154 266 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 LYPD2Q6UXB3 125 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 ZNF439Q8NDP4 499 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 PRTN3P24158 256 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 ATP6V0CP27449 155 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 DVL1P1P54792 670 aaPredicted RBP6.89□□□□□ -1.31
USP54-203ENST00000418501 SPRNQ5BIV9 151 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 ABHD5Q8WTS1 349 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 SRSF8Q9BRL6 282 aaKnown RBP6.89□□□□□ -1.31
USP54-203ENST00000418501 PARP12Q9H0J9 701 aaKnown RBP6.89□□□□□ -1.31
USP54-203ENST00000418501 CYTL1Q9NRR1 136 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 TBL2Q9Y4P3 447 aaKnown RBP6.89□□□□□ -1.31
USP54-203ENST00000418501 ATRXP46100 2492 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 F8W036 122 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 RAMP3O60896 148 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 CNIH1O95406 144 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 IGHV3-7P01780 117 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 HES1Q14469 280 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 TMEM41BQ5BJD5 291 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 FAM74A1Q5RGS3 127 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 C11orf71Q6IPW1 123 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 GPHA2Q96T91 129 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 MRPL20Q9BYC9 149 aaKnown RBP6.89□□□□□ -1.31
USP54-203ENST00000418501 REG4Q9BYZ8 158 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 NPVFQ9HCQ7 196 aa6.89□□□□□ -1.31
USP54-203ENST00000418501 UBE2L5PA0A1B0GUS4 154 aa6.88□□□□□ -1.31
USP54-203ENST00000418501 MEX3AA1L020 520 aaKnown RBP6.88□□□□□ -1.31
USP54-203ENST00000418501 LINC00473A8K010 186 aa6.88□□□□□ -1.31
USP54-203ENST00000418501 UQCRFS1P47985 274 aa6.88□□□□□ -1.31
USP54-203ENST00000418501 TAS2R45P59539 299 aa6.88□□□□□ -1.31
USP54-203ENST00000418501 LRRC75BQ2VPJ9 315 aa6.88□□□□□ -1.31
USP54-203ENST00000418501 TMEM14EPQ6UXP3 125 aa6.88□□□□□ -1.31
USP54-203ENST00000418501 OR5AN1Q8NGI8 311 aa6.88□□□□□ -1.31
USP54-203ENST00000418501 C19orf24Q9BVV8 132 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms