RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 MPTX1A8MV57 137 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 J3QLI3 93 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 LANCL1O43813 399 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 RPS27P42677 84 aaKnown RBP6.24□□□□□ -1.41
SCN9A-202ENST00000409435 FABP5Q01469 135 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 PRSS8Q16651 343 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 ZNF324BQ6AW86 544 aaPredicted RBP6.24□□□□□ -1.41
SCN9A-202ENST00000409435 PDPNQ86YL7 162 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 MDS2Q8NDY4 140 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 LINC00470Q9BZP3 86 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 OR5AC2Q9NZP5 309 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 ERGP11308 486 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 DHRS2Q13268 280 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 ZNF770Q6IQ21 691 aaPredicted RBP6.24□□□□□ -1.41
SCN9A-202ENST00000409435 BCDIN3DQ7Z5W3 292 aaKnown RBP6.24□□□□□ -1.41
SCN9A-202ENST00000409435 ABHD12Q8N2K0 398 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 LRRC75AQ8NAA5 344 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 OR52E5Q8NH55 327 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 NEU1Q99519 415 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 HSD17B10Q99714 261 aaKnown RBP6.24□□□□□ -1.41
SCN9A-202ENST00000409435 NRIP2Q9BQI9 281 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 KLK11Q9UBX7 282 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 SIP14410 1827 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.24□□□□□ -1.41
SCN9A-202ENST00000409435 C9orf170A2RU37 121 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 APOMO95445 188 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 MMP16P51512 607 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 FGF12P61328 243 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 C19orf54Q5BKX5 351 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 WDR25Q64LD2 544 aaPredicted RBP6.24□□□□□ -1.41
SCN9A-202ENST00000409435 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 ZIC4Q8N9L1 334 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 SPACA5Q96QH8 159 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 HDHD3Q9BSH5 251 aaPredicted RBP6.24□□□□□ -1.41
SCN9A-202ENST00000409435 PGPEP1Q9NXJ5 209 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 LRP12Q9Y561 859 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 SHROOM3Q8TF72 1996 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 MGST3O14880 152 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 PRSS2P07478 247 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 MUC1P15941 1255 aaPredicted RBP6.24□□□□□ -1.41
SCN9A-202ENST00000409435 REG1BP48304 166 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 LHX2P50458 406 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 C17orf82Q86X59 251 aaPredicted RBP6.24□□□□□ -1.41
SCN9A-202ENST00000409435 MRAPQ8TCY5 172 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 SMIM19Q96E16 107 aa6.24□□□□□ -1.41
SCN9A-202ENST00000409435 FRMPD3Q5JV73 1810 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 IGKV1-8A0A0C4DH67 115 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 WNT9BO14905 357 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 SRSF10O75494 262 aaKnown RBP6.23□□□□□ -1.41
SCN9A-202ENST00000409435 THY1P04216 161 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 SSBP2P81877 361 aaPredicted RBP6.23□□□□□ -1.41
SCN9A-202ENST00000409435 PSG4Q00888 419 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 ZNF260Q3ZCT1 412 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 GCSAMLQ5JQS6 135 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 STAC2Q6ZMT1 411 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 PRELID3AQ96N28 172 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 ICAM5Q9UMF0 924 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 CACNA1IQ9P0X4 2223 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 A0A1B0GUS0 222 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 LOC105371267A0A1B0GV96 52 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 ARRDC5A6NEK1 342 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 KBTBD11O94819 623 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 FGF2P09038 288 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 TRGC1P0CF51 173 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 TDGF1P13385 188 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 PPP1R1AQ13522 171 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 FAM27BQ5VT28 67 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 RTN4RL2Q86UN3 420 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 OR13A1Q8NGR1 328 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 SGMS2Q8NHU3 365 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 OTOSQ8NHW6 89 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 SPANXCQ9NY87 97 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 SVILO95425 2214 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 FOXF2Q12947 444 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 SLIRPQ9GZT3 109 aaKnown RBP6.23□□□□□ -1.41
SCN9A-202ENST00000409435 ZNF257Q9Y2Q1 563 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 MBD3L4A6NDZ8 208 aaPredicted RBP6.23□□□□□ -1.41
SCN9A-202ENST00000409435 MBD3L3A6NE82 208 aaPredicted RBP6.23□□□□□ -1.41
SCN9A-202ENST00000409435 MBD3L5A6NJ08 208 aaPredicted RBP6.23□□□□□ -1.41
SCN9A-202ENST00000409435 EREGO14944 169 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 HTN3P15516 51 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 CTLA4P16410 223 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 FAM71F2Q6NXP2 309 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 IL17RELQ6ZVW7 336 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 PUSL1Q8N0Z8 303 aaKnown RBP6.23□□□□□ -1.41
SCN9A-202ENST00000409435 GCSAMQ8N6F7 178 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 MBD3L2Q8NHZ7 208 aaPredicted RBP6.23□□□□□ -1.41
SCN9A-202ENST00000409435 Q8WTZ3 238 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 DDB2Q92466 427 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 BPESC1Q9GZL8 116 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 NEU3Q9UQ49 428 aa6.23□□□□□ -1.41
SCN9A-202ENST00000409435 MMP9P14780 707 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 TMEM204Q9BSN7 226 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 EDA2RQ9HAV5 297 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.22□□□□□ -1.41
SCN9A-202ENST00000409435 PSMB11A5LHX3 300 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 SLC25A1P53007 311 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 ZNF345Q14585 488 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 DMRTC1Q5HYR2 192 aa6.22□□□□□ -1.41
SCN9A-202ENST00000409435 ZNF362Q5T0B9 420 aaPredicted RBP6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms