RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 FAM222AQ5U5X8 452 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 TMEM179BQ7Z7N9 219 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 KLHDC8BQ8IXV7 354 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 OR5K1Q8NHB7 308 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 DCAKDQ8WVC6 231 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 GTSF1Q8WW33 167 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 PTX4Q96A99 478 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 SLC35G5Q96KT7 338 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 GPR82Q96P67 336 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 LXNQ9BS40 222 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 TMEM70Q9BUB7 260 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 C20orf27Q9GZN8 174 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 SCRT2Q9NQ03 307 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 FAM49BQ9NUQ9 324 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 TMEM38BQ9NVV0 291 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 RSL24D1Q9UHA3 163 aaKnown RBP3□□□□□ -1.93
HMGB1-204ENST00000399489 KLK13Q9UKR3 277 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 ZFP30Q9Y2G7 519 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 KLF13Q9Y2Y9 288 aaPredicted RBP3□□□□□ -1.93
HMGB1-204ENST00000399489 INSIG2Q9Y5U4 225 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 PEAK1Q9H792 1746 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 FMN2Q9NZ56 1722 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 GON4LQ3T8J9 2241 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 CLTCL1P53675 1640 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 YLPM1P49750 1951 aaKnown RBP3□□□□□ -1.93
HMGB1-204ENST00000399489 OVOS2A0A0G2JMS6 1433 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 ANKARQ7Z5J8 1434 aa3□□□□□ -1.93
HMGB1-204ENST00000399489 TRPM3Q9HCF6 1732 aaPredicted RBP2.99□□□□□ -1.93
HMGB1-204ENST00000399489 CRYBG1Q9Y4K1 1723 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 IGLV7-46A0A075B6I9 117 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 TRAV36DV7A0A075B6V5 113 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 FAM236DA0A1B0GTK5 79 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 GMNCA6NCL1 334 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 H7C1C5 153 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 MMP23AO75900 390 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 FAM236CP0DP71 79 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 FGF6P10767 208 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 ORM2P19652 201 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 CTBP2P56545 445 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 TAS2R30P59541 319 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 LCN6P62502 163 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 GRB2P62993 217 aaKnown RBP2.99□□□□□ -1.93
HMGB1-204ENST00000399489 CRADDP78560 199 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 ZNF239Q16600 458 aaKnown RBP2.99□□□□□ -1.93
HMGB1-204ENST00000399489 IAH1Q2TAA2 248 aaPredicted RBP2.99□□□□□ -1.93
HMGB1-204ENST00000399489 ZFP69Q49AA0 526 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 HSD17B12Q53GQ0 312 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 TMEM69Q5SWH9 247 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 LCN8Q6JVE9 175 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 FAM19A3Q7Z5A8 133 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 VN1R4Q7Z5H5 301 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 C4orf33Q8N1A6 199 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 ACBD7Q8N6N7 88 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 JOSD2Q8TAC2 188 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 C7orf33Q8WU49 177 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 ATOH8Q96SQ7 321 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 LINC00470Q9BZP3 86 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 PARP12Q9H0J9 701 aaKnown RBP2.99□□□□□ -1.93
HMGB1-204ENST00000399489 ERG28Q9UKR5 140 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 TRAPPC2LQ9UL33 140 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 ALS2Q96Q42 1657 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 ATP7BP35670 1465 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 IGHV2-26A0A0B4J1V2 119 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 A0A0J9YXY3 114 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 hADV38S2A0JD32 116 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 C5orf49A4QMS7 147 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 ZNF850A8MQ14 1090 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 SHISA9B4DS77 424 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 M0R1X1 148 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 CORTO00230 105 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 ISLRO14498 428 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 NDUFC2O95298 119 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 NPY1RP25929 384 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 HLA-DRB3P79483 266 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 FABP5Q01469 135 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 PLCXD2Q0VAA5 305 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 SHISA6Q6ZSJ9 500 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 CROCCP2Q86T23 111 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 LINC01551Q86U37 167 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 OR11H6Q8NGC7 330 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 OR5A1Q8NGJ0 315 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 OR52P1PQ8NH57 321 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 THEM6Q8WUY1 208 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 ORAOV1Q8WV07 137 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 SLC7A6Q92536 515 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 FAM104AQ969W3 186 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 CMBLQ96DG6 245 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 F2RL3Q96RI0 385 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 TP53RKQ96S44 253 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 FGFBP2Q9BYJ0 223 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 HEXA-AS1Q9H8Q6 139 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 EFCAB1Q9HAE3 211 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 POPDC3Q9HBV1 291 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 UQCC1Q9NVA1 299 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 TMEM216Q9P0N5 145 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 POMPQ9Y244 141 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 TMEM131Q92545 1883 aa2.99□□□□□ -1.93
HMGB1-204ENST00000399489 PAPPAQ13219 1627 aa2.98□□□□□ -1.93
HMGB1-204ENST00000399489 PHRF1Q9P1Y6 1649 aaKnown RBP2.98□□□□□ -1.93
HMGB1-204ENST00000399489 INMT-MINDY4F8WBC2 141 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms