RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 GFRA1P56159 465 aa11.48□□□□□ -0.57
USP49-201ENST00000373006 PLP2Q04941 152 aa11.48□□□□□ -0.57
USP49-201ENST00000373006 IL11RAQ14626 422 aa11.48□□□□□ -0.57
USP49-201ENST00000373006 ATP6V1FQ16864 119 aa11.48□□□□□ -0.57
USP49-201ENST00000373006 Q6ZN92 141 aa11.48□□□□□ -0.57
USP49-201ENST00000373006 TMEM144Q7Z5S9 345 aa11.48□□□□□ -0.57
USP49-201ENST00000373006 ELOVL5Q9NYP7 299 aa11.48□□□□□ -0.57
USP49-201ENST00000373006 BRWD1-AS2P59051 145 aa11.47□□□□□ -0.57
USP49-201ENST00000373006 RBX1P62877 108 aa11.47□□□□□ -0.57
USP49-201ENST00000373006 Q6ZWC4 215 aa11.47□□□□□ -0.57
USP49-201ENST00000373006 WDR86Q86TI4 376 aa11.47□□□□□ -0.57
USP49-201ENST00000373006 OR4C5Q8NGB2 326 aa11.47□□□□□ -0.57
USP49-201ENST00000373006 SFRP2Q96HF1 295 aa11.47□□□□□ -0.57
USP49-201ENST00000373006 WNT10AQ9GZT5 417 aa11.47□□□□□ -0.57
USP49-201ENST00000373006 ZNF318Q5VUA4 2279 aa11.47□□□□□ -0.57
USP49-201ENST00000373006 K7ESF4 209 aa11.47□□□□□ -0.57
USP49-201ENST00000373006 WNT2P09544 360 aa11.47□□□□□ -0.57
USP49-201ENST00000373006 ZNF703Q9H7S9 590 aaPredicted RBP11.47□□□□□ -0.57
USP49-201ENST00000373006 A0A1W2PPV4 95 aa11.47□□□□□ -0.57
USP49-201ENST00000373006 OR5B21A6NL26 309 aa11.47□□□□□ -0.57
USP49-201ENST00000373006 M0QZK8 103 aa11.47□□□□□ -0.57
USP49-201ENST00000373006 NXPH2O95156 264 aa11.47□□□□□ -0.57
USP49-201ENST00000373006 MT-CO3P00414 261 aa11.47□□□□□ -0.57
USP49-201ENST00000373006 FRMD6-AS1P0C7T7 363 aa11.47□□□□□ -0.57
USP49-201ENST00000373006 C3AR1Q16581 482 aa11.47□□□□□ -0.57
USP49-201ENST00000373006 SCCPDHQ8NBX0 429 aa11.47□□□□□ -0.57
USP49-201ENST00000373006 RYDENQ9NUL5 291 aaKnown RBP11.47□□□□□ -0.57
USP49-201ENST00000373006 TMEM106BQ9NUM4 274 aa11.47□□□□□ -0.57
USP49-201ENST00000373006 TP53TG3Q9ULZ0 132 aa11.47□□□□□ -0.57
USP49-201ENST00000373006 MPC1Q9Y5U8 109 aa11.47□□□□□ -0.57
USP49-201ENST00000373006 SLC17A3O00476 420 aa11.46□□□□□ -0.57
USP49-201ENST00000373006 PMCHP20382 165 aa11.46□□□□□ -0.57
USP49-201ENST00000373006 KITLGP21583 273 aa11.46□□□□□ -0.57
USP49-201ENST00000373006 VAMP3Q15836 100 aa11.46□□□□□ -0.57
USP49-201ENST00000373006 PLPPR2Q96GM1 343 aa11.46□□□□□ -0.57
USP49-201ENST00000373006 MDFIC2A0A1B0GVS7 189 aa11.46□□□□□ -0.58
USP49-201ENST00000373006 RNF212BA8MTL3 300 aa11.46□□□□□ -0.58
USP49-201ENST00000373006 F2Z2F3 143 aa11.46□□□□□ -0.58
USP49-201ENST00000373006 F6UZH7 168 aa11.46□□□□□ -0.58
USP49-201ENST00000373006 J3QT63 122 aa11.46□□□□□ -0.58
USP49-201ENST00000373006 SS18L1O75177 396 aaPredicted RBP11.46□□□□□ -0.58
USP49-201ENST00000373006 GRPP07492 148 aa11.46□□□□□ -0.58
USP49-201ENST00000373006 CYB561P49447 251 aa11.46□□□□□ -0.58
USP49-201ENST00000373006 FOXL1Q12952 345 aa11.46□□□□□ -0.58
USP49-201ENST00000373006 H2BFWTQ7Z2G1 175 aa11.46□□□□□ -0.58
USP49-201ENST00000373006 TMEM45BQ96B21 275 aa11.46□□□□□ -0.58
USP49-201ENST00000373006 SLC35E1Q96K37 410 aa11.46□□□□□ -0.58
USP49-201ENST00000373006 MIEN1Q9BRT3 115 aa11.46□□□□□ -0.58
USP49-201ENST00000373006 HES7Q9BYE0 225 aa11.46□□□□□ -0.58
USP49-201ENST00000373006 C12orf49Q9H741 205 aa11.46□□□□□ -0.58
USP49-201ENST00000373006 SIT1Q9Y3P8 196 aa11.46□□□□□ -0.58
USP49-201ENST00000373006 IGHV3-43A0A0B4J1X8 118 aa11.45□□□□□ -0.58
USP49-201ENST00000373006 FAM166BA8MTA8 275 aa11.45□□□□□ -0.58
USP49-201ENST00000373006 DEFB108AA8MXU0 73 aa11.45□□□□□ -0.58
USP49-201ENST00000373006 C17orf112F2Z3M2 114 aa11.45□□□□□ -0.58
USP49-201ENST00000373006 PDE6DO43924 150 aa11.45□□□□□ -0.58
USP49-201ENST00000373006 PSPNO60542 156 aa11.45□□□□□ -0.58
USP49-201ENST00000373006 IGHV3-43DP0DP04 118 aa11.45□□□□□ -0.58
USP49-201ENST00000373006 TMEM183BQ1AE95 376 aa11.45□□□□□ -0.58
USP49-201ENST00000373006 NRN1LQ496H8 165 aa11.45□□□□□ -0.58
USP49-201ENST00000373006 PRR31Q5SQ13 230 aa11.45□□□□□ -0.58
USP49-201ENST00000373006 S100A7AQ86SG5 101 aa11.45□□□□□ -0.58
USP49-201ENST00000373006 CXorf67Q86X51 503 aaPredicted RBP11.45□□□□□ -0.58
USP49-201ENST00000373006 ZNF645Q8N7E2 425 aa11.45□□□□□ -0.58
USP49-201ENST00000373006 TPRX1Q8N7U7 411 aa11.45□□□□□ -0.58
USP49-201ENST00000373006 OCC1Q8TAD7 63 aa11.45□□□□□ -0.58
USP49-201ENST00000373006 CDX2Q99626 313 aaPredicted RBP11.45□□□□□ -0.58
USP49-201ENST00000373006 ALKBH7Q9BT30 221 aaPredicted RBP11.45□□□□□ -0.58
USP49-201ENST00000373006 MED13Q9UHV7 2174 aa11.45□□□□□ -0.58
USP49-201ENST00000373006 SERF1AO75920 110 aa11.45□□□□□ -0.58
USP49-201ENST00000373006 CYC1P08574 325 aa11.45□□□□□ -0.58
USP49-201ENST00000373006 RAC2P15153 192 aa11.45□□□□□ -0.58
USP49-201ENST00000373006 SLC35B1P78383 322 aa11.45□□□□□ -0.58
USP49-201ENST00000373006 AESQ08117 197 aa11.45□□□□□ -0.58
USP49-201ENST00000373006 ALKBH6Q3KRA9 238 aa11.45□□□□□ -0.58
USP49-201ENST00000373006 SCO2A0A1W2PP80 73 aa11.44□□□□□ -0.58
USP49-201ENST00000373006 IL6RP08887 468 aaPredicted RBP11.44□□□□□ -0.58
USP49-201ENST00000373006 ZNF90Q03938 601 aa11.44□□□□□ -0.58
USP49-201ENST00000373006 MOB1BQ7L9L4 216 aa11.44□□□□□ -0.58
USP49-201ENST00000373006 Q8N7P7 452 aa11.44□□□□□ -0.58
USP49-201ENST00000373006 MAFAQ8NHW3 353 aaPredicted RBP11.44□□□□□ -0.58
USP49-201ENST00000373006 RFESDQ8TAC1 157 aa11.44□□□□□ -0.58
USP49-201ENST00000373006 APH1AQ96BI3 265 aa11.44□□□□□ -0.58
USP49-201ENST00000373006 GALMQ96C23 342 aa11.44□□□□□ -0.58
USP49-201ENST00000373006 CNOT1A5YKK6 2376 aaKnown RBP11.44□□□□□ -0.58
USP49-201ENST00000373006 TNRC6AQ8NDV7 1962 aaKnown RBP11.44□□□□□ -0.58
USP49-201ENST00000373006 CEP250Q9BV73 2442 aa11.44□□□□□ -0.58
USP49-201ENST00000373006 C12orf77C9JDV5 145 aa11.44□□□□□ -0.58
USP49-201ENST00000373006 ARL14EPLP0DKL9 152 aa11.44□□□□□ -0.58
USP49-201ENST00000373006 CD1BP29016 333 aa11.44□□□□□ -0.58
USP49-201ENST00000373006 HNRNPA3P51991 378 aaKnown RBP11.44□□□□□ -0.58
USP49-201ENST00000373006 LINC00310P59036 64 aa11.44□□□□□ -0.58
USP49-201ENST00000373006 HLA-DRB5Q30154 266 aa11.44□□□□□ -0.58
USP49-201ENST00000373006 KIAA1644Q3SXP7 199 aa11.44□□□□□ -0.58
USP49-201ENST00000373006 PKIBQ9C010 78 aa11.44□□□□□ -0.58
USP49-201ENST00000373006 MBNL3Q9NUK0 354 aaKnown RBP11.44□□□□□ -0.58
USP49-201ENST00000373006 KCNIP1Q9NZI2 227 aa11.44□□□□□ -0.58
USP49-201ENST00000373006 ZFP30Q9Y2G7 519 aa11.44□□□□□ -0.58
USP49-201ENST00000373006 TMEM238LA0A1B0GVL6 79 aa11.44□□□□□ -0.58
USP49-201ENST00000373006 TMPRSS2O15393 492 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms