RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 BRWD1-AS2P59051 145 aa4.54□□□□□ -1.68
ATG4A-204ENST00000372246 SRPXP78539 464 aa4.54□□□□□ -1.68
ATG4A-204ENST00000372246 ALKBH6Q3KRA9 238 aa4.54□□□□□ -1.68
ATG4A-204ENST00000372246 RHBDD2Q6NTF9 364 aa4.54□□□□□ -1.68
ATG4A-204ENST00000372246 DRAM1Q8N682 238 aa4.54□□□□□ -1.68
ATG4A-204ENST00000372246 Q8N976 141 aa4.54□□□□□ -1.68
ATG4A-204ENST00000372246 OR52L2PQ8NGH6 319 aa4.54□□□□□ -1.68
ATG4A-204ENST00000372246 ATP6V0BQ99437 205 aa4.54□□□□□ -1.68
ATG4A-204ENST00000372246 MIEN1Q9BRT3 115 aa4.54□□□□□ -1.68
ATG4A-204ENST00000372246 DCTN5Q9BTE1 182 aa4.54□□□□□ -1.68
ATG4A-204ENST00000372246 LRFN3Q9BTN0 628 aa4.54□□□□□ -1.68
ATG4A-204ENST00000372246 MRPL18Q9H0U6 180 aaKnown RBP4.54□□□□□ -1.68
ATG4A-204ENST00000372246 GP6Q9HCN6 339 aa4.54□□□□□ -1.68
ATG4A-204ENST00000372246 TMEM9BQ9NQ34 198 aa4.54□□□□□ -1.68
ATG4A-204ENST00000372246 CACNA1EQ15878 2313 aa4.54□□□□□ -1.68
ATG4A-204ENST00000372246 ODAMA1E959 279 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 LMO7DNF2Z398 122 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 FCN1O00602 326 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 OR5G3P0C626 314 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 ARL14EPLP0DKL9 152 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 SLC25A6P12236 298 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 CRISP2P16562 243 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 TIMP3P35625 211 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 PMCHL1Q16048 86 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 SPATA45Q537H7 98 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 SLC25A53Q5H9E4 307 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 FBXW9Q5XUX1 488 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 DOLPP1Q86YN1 238 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 LYG1Q8N1E2 194 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 OR5A2Q8NGI9 324 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 NEIL1Q96FI4 390 aaPredicted RBP4.53□□□□□ -1.68
ATG4A-204ENST00000372246 ABHD14BQ96IU4 210 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 RAB40CQ96S21 281 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 NPCDR1Q9BY65 106 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 RNASE7Q9H1E1 156 aaKnown RBP4.53□□□□□ -1.68
ATG4A-204ENST00000372246 GNB4Q9HAV0 340 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 DLL3Q9NYJ7 618 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 YTHDF2Q9Y5A9 579 aaKnown RBP4.53□□□□□ -1.68
ATG4A-204ENST00000372246 MGAQ8IWI9 3026 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 DUXBA0A1W2PPF3 345 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 A0A1W2PQM1 296 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 PINLYPA6NC86 204 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 SH2D7A6NKC9 451 aaPredicted RBP4.53□□□□□ -1.68
ATG4A-204ENST00000372246 SNURFLB1AK76 121 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 C2CD4DB7Z1M9 353 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 TRAPPC2LH3BP13 241 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 WNT9BO14905 357 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 DUX1O43812 170 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 TNFSF13O75888 250 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 ACTL6BO94805 426 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 IFNA1P01562 189 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 UMODP07911 640 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 LIFP15018 202 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 DUSP3P51452 185 aaPredicted RBP4.53□□□□□ -1.68
ATG4A-204ENST00000372246 SUMO3P55854 103 aaPredicted RBP4.53□□□□□ -1.68
ATG4A-204ENST00000372246 TCTAP57738 103 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 ARF1P84077 181 aaKnown RBP4.53□□□□□ -1.68
ATG4A-204ENST00000372246 ZNF90Q03938 601 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 FOXE3Q13461 319 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 MIC13Q5XKP0 118 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 MRPL54Q6P161 138 aaKnown RBP4.53□□□□□ -1.68
ATG4A-204ENST00000372246 VHLLQ6RSH7 139 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 Q6ZN92 141 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 NUFIP2Q7Z417 695 aaKnown RBP4.53□□□□□ -1.68
ATG4A-204ENST00000372246 TMEM144Q7Z5S9 345 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 CENPVQ7Z7K6 275 aaPredicted RBP4.53□□□□□ -1.68
ATG4A-204ENST00000372246 MOB3BQ86TA1 216 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 TGIF2LYQ8IUE0 185 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 PLXDC1Q8IUK5 500 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 OR8I2Q8N0Y5 310 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 CISD2Q8N5K1 135 aaKnown RBP4.53□□□□□ -1.68
ATG4A-204ENST00000372246 KIR3DL3Q8N743 410 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 FADS6Q8N9I5 356 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 TSTD1Q8NFU3 115 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 OR2M7Q8NG81 312 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 SFRP2Q96HF1 295 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 P2RX4Q99571 388 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 OR2D2Q9H210 308 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 TRAPPC2LQ9UL33 140 aa4.53□□□□□ -1.68
ATG4A-204ENST00000372246 TBL2Q9Y4P3 447 aaKnown RBP4.53□□□□□ -1.68
ATG4A-204ENST00000372246 ZZEF1O43149 2961 aa4.53□□□□□ -1.69
ATG4A-204ENST00000372246 ICE1Q9Y2F5 2266 aa4.53□□□□□ -1.69
ATG4A-204ENST00000372246 LNP1A1A4G5 178 aa4.52□□□□□ -1.69
ATG4A-204ENST00000372246 FAM166BA8MTA8 275 aa4.52□□□□□ -1.69
ATG4A-204ENST00000372246 DIRC3C9JPN6 131 aa4.52□□□□□ -1.69
ATG4A-204ENST00000372246 F6UZH7 168 aa4.52□□□□□ -1.69
ATG4A-204ENST00000372246 F8W735 103 aaPredicted RBP4.52□□□□□ -1.69
ATG4A-204ENST00000372246 HYPMO75409 117 aa4.52□□□□□ -1.69
ATG4A-204ENST00000372246 GATA2P23769 480 aaPredicted RBP4.52□□□□□ -1.69
ATG4A-204ENST00000372246 CCKARP32238 428 aa4.52□□□□□ -1.69
ATG4A-204ENST00000372246 CDC34P49427 236 aaPredicted RBP4.52□□□□□ -1.69
ATG4A-204ENST00000372246 PTTG1IPP53801 180 aa4.52□□□□□ -1.69
ATG4A-204ENST00000372246 FGF12P61328 243 aa4.52□□□□□ -1.69
ATG4A-204ENST00000372246 HBG1P69891 147 aa4.52□□□□□ -1.69
ATG4A-204ENST00000372246 HBG2P69892 147 aa4.52□□□□□ -1.69
ATG4A-204ENST00000372246 MRPS21P82921 87 aaKnown RBP4.52□□□□□ -1.69
ATG4A-204ENST00000372246 OR8B8Q15620 311 aa4.52□□□□□ -1.69
ATG4A-204ENST00000372246 MSMO1Q15800 293 aa4.52□□□□□ -1.69
ATG4A-204ENST00000372246 ACOT6Q3I5F7 207 aaPredicted RBP4.52□□□□□ -1.69
ATG4A-204ENST00000372246 TEX43Q6ZNM6 134 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms