RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 HIST1H2BDP58876 126 aa13.22□□□□□ -0.29
COL5A1-201ENST00000371817 HIST1H2BCP62807 126 aa13.22□□□□□ -0.29
COL5A1-201ENST00000371817 HIST2H2BEQ16778 126 aa13.22□□□□□ -0.29
COL5A1-201ENST00000371817 CXorf66Q5JRM2 361 aaPredicted RBP13.22□□□□□ -0.29
COL5A1-201ENST00000371817 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.22□□□□□ -0.29
COL5A1-201ENST00000371817 HIST1H2BHQ93079 126 aa13.22□□□□□ -0.29
COL5A1-201ENST00000371817 HIST1H2BNQ99877 126 aa13.22□□□□□ -0.29
COL5A1-201ENST00000371817 HIST1H2BMQ99879 126 aa13.22□□□□□ -0.29
COL5A1-201ENST00000371817 IGKV3D-15A0A087WSY6 115 aa13.22□□□□□ -0.29
COL5A1-201ENST00000371817 K7N7A8 449 aa13.22□□□□□ -0.29
COL5A1-201ENST00000371817 CDIPTO14735 213 aa13.22□□□□□ -0.29
COL5A1-201ENST00000371817 SERF1AO75920 110 aa13.22□□□□□ -0.29
COL5A1-201ENST00000371817 IGKV3-15P01624 115 aa13.22□□□□□ -0.29
COL5A1-201ENST00000371817 TBR1Q16650 682 aa13.22□□□□□ -0.29
COL5A1-201ENST00000371817 ARHGAP32A7KAX9 2087 aa13.22□□□□□ -0.29
COL5A1-201ENST00000371817 GAGE12BA1L429 117 aa13.22□□□□□ -0.29
COL5A1-201ENST00000371817 RPL31P62899 125 aaKnown RBP13.22□□□□□ -0.29
COL5A1-201ENST00000371817 MRPL32Q9BYC8 188 aaKnown RBP13.22□□□□□ -0.29
COL5A1-201ENST00000371817 SSBP2P81877 361 aaPredicted RBP13.22□□□□□ -0.29
COL5A1-201ENST00000371817 ROS1P08922 2347 aa13.22□□□□□ -0.29
COL5A1-201ENST00000371817 SPINK8P0C7L1 97 aa13.21□□□□□ -0.29
COL5A1-201ENST00000371817 UBE2V1Q13404 147 aa13.21□□□□□ -0.29
COL5A1-201ENST00000371817 WNT9BO14905 357 aa13.21□□□□□ -0.29
COL5A1-201ENST00000371817 CD1AP06126 327 aa13.21□□□□□ -0.29
COL5A1-201ENST00000371817 GGTLC2Q14390 218 aa13.21□□□□□ -0.29
COL5A1-201ENST00000371817 CNTFRP26992 372 aa13.21□□□□□ -0.29
COL5A1-201ENST00000371817 IMMP2LQ96T52 175 aa13.21□□□□□ -0.29
COL5A1-201ENST00000371817 EML6Q6ZMW3 1958 aa13.21□□□□□ -0.29
COL5A1-201ENST00000371817 IGKV3D-11A0A0A0MRZ8 115 aa13.21□□□□□ -0.29
COL5A1-201ENST00000371817 IGKV3-11P04433 115 aa13.21□□□□□ -0.29
COL5A1-201ENST00000371817 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.21□□□□□ -0.29
COL5A1-201ENST00000371817 WFDC3Q8IUB2 231 aa13.21□□□□□ -0.29
COL5A1-201ENST00000371817 SSBP3Q9BWW4 388 aaPredicted RBP13.21□□□□□ -0.29
COL5A1-201ENST00000371817 NCKAP5O14513 1909 aa13.21□□□□□ -0.3
COL5A1-201ENST00000371817 RTP5Q14D33 572 aa13.21□□□□□ -0.3
COL5A1-201ENST00000371817 PHLDA1Q8WV24 401 aaPredicted RBP13.21□□□□□ -0.3
COL5A1-201ENST00000371817 C5orf66Q9H5L9 145 aa13.21□□□□□ -0.3
COL5A1-201ENST00000371817 PLAUP00749 431 aa13.21□□□□□ -0.3
COL5A1-201ENST00000371817 ORMDL3Q8N138 153 aa13.21□□□□□ -0.3
COL5A1-201ENST00000371817 A0A0G2JLM5 398 aa13.2□□□□□ -0.3
COL5A1-201ENST00000371817 DLL1O00548 723 aa13.2□□□□□ -0.3
COL5A1-201ENST00000371817 ZNF479Q96JC4 524 aa13.2□□□□□ -0.3
COL5A1-201ENST00000371817 GPR132Q9UNW8 380 aa13.2□□□□□ -0.3
COL5A1-201ENST00000371817 CHODLQ9H9P2 273 aa13.2□□□□□ -0.3
COL5A1-201ENST00000371817 NPDC1Q9NQX5 325 aaPredicted RBP13.2□□□□□ -0.3
COL5A1-201ENST00000371817 KCNE1BA0A087WTH5 132 aa13.2□□□□□ -0.3
COL5A1-201ENST00000371817 A0A1W2PS18 150 aa13.2□□□□□ -0.3
COL5A1-201ENST00000371817 HOXC4P09017 264 aaPredicted RBP13.2□□□□□ -0.3
COL5A1-201ENST00000371817 TNFRSF19Q9NS68 423 aa13.2□□□□□ -0.3
COL5A1-201ENST00000371817 PPIAL4EA0A075B759 164 aa13.2□□□□□ -0.3
COL5A1-201ENST00000371817 PPIAL4FP0DN26 164 aa13.2□□□□□ -0.3
COL5A1-201ENST00000371817 HSD52Q0P140 79 aa13.2□□□□□ -0.3
COL5A1-201ENST00000371817 VSTM2LQ96N03 204 aa13.2□□□□□ -0.3
COL5A1-201ENST00000371817 SIT1Q9Y3P8 196 aa13.2□□□□□ -0.3
COL5A1-201ENST00000371817 PPIAL4AQ9Y536 164 aa13.2□□□□□ -0.3
COL5A1-201ENST00000371817 PLCE1Q9P212 2302 aa13.2□□□□□ -0.3
COL5A1-201ENST00000371817 PLNP26678 52 aa13.2□□□□□ -0.3
COL5A1-201ENST00000371817 OCIAD2Q56VL3 154 aa13.2□□□□□ -0.3
COL5A1-201ENST00000371817 TMEM170AQ8WVE7 144 aa13.2□□□□□ -0.3
COL5A1-201ENST00000371817 AQP3Q92482 292 aa13.2□□□□□ -0.3
COL5A1-201ENST00000371817 TNFRSF6BO95407 300 aa13.2□□□□□ -0.3
COL5A1-201ENST00000371817 ECSCRQ19T08 205 aa13.2□□□□□ -0.3
COL5A1-201ENST00000371817 NOVP48745 357 aa13.19□□□□□ -0.3
COL5A1-201ENST00000371817 ATP5IP56385 69 aaPredicted RBP13.19□□□□□ -0.3
COL5A1-201ENST00000371817 TMPRSS3P57727 454 aa13.19□□□□□ -0.3
COL5A1-201ENST00000371817 FAM74A4Q5TZK3 123 aa13.19□□□□□ -0.3
COL5A1-201ENST00000371817 ATRAIDQ6UW56 229 aa13.19□□□□□ -0.3
COL5A1-201ENST00000371817 HIST1H2BLQ99880 126 aa13.19□□□□□ -0.3
COL5A1-201ENST00000371817 MDP1Q86V88 176 aa13.19□□□□□ -0.3
COL5A1-201ENST00000371817 CCL27Q9Y4X3 112 aa13.19□□□□□ -0.3
COL5A1-201ENST00000371817 WNK3Q9BYP7 1800 aa13.19□□□□□ -0.3
COL5A1-201ENST00000371817 NPFFO15130 113 aa13.19□□□□□ -0.3
COL5A1-201ENST00000371817 HIST1H4AP62805 103 aaKnown RBP13.19□□□□□ -0.3
COL5A1-201ENST00000371817 SSPNQ14714 243 aa13.19□□□□□ -0.3
COL5A1-201ENST00000371817 WIPI1Q5MNZ9 446 aaPredicted RBP13.19□□□□□ -0.3
COL5A1-201ENST00000371817 GGTLC3B5MD39 225 aa13.19□□□□□ -0.3
COL5A1-201ENST00000371817 IGLV3-27P01718 113 aa13.19□□□□□ -0.3
COL5A1-201ENST00000371817 ERVK11-1P61568 191 aa13.19□□□□□ -0.3
COL5A1-201ENST00000371817 SLC25A15Q9Y619 301 aa13.19□□□□□ -0.3
COL5A1-201ENST00000371817 IGLV3-25P01717 112 aa13.19□□□□□ -0.3
COL5A1-201ENST00000371817 ANKRD33Q7Z3H0 272 aa13.19□□□□□ -0.3
COL5A1-201ENST00000371817 ZNF488Q96MN9 340 aa13.19□□□□□ -0.3
COL5A1-201ENST00000371817 RPL8P62917 257 aaKnown RBP13.19□□□□□ -0.3
COL5A1-201ENST00000371817 PNKDQ8N490 385 aa13.18□□□□□ -0.3
COL5A1-201ENST00000371817 RNF182Q8N6D2 247 aa13.18□□□□□ -0.3
COL5A1-201ENST00000371817 TNFSF13O75888 250 aa13.18□□□□□ -0.3
COL5A1-201ENST00000371817 LGALS1P09382 135 aaKnown RBP13.18□□□□□ -0.3
COL5A1-201ENST00000371817 ATXN8Q156A1 80 aa13.18□□□□□ -0.3
COL5A1-201ENST00000371817 C8orf82Q6P1X6 216 aaPredicted RBP13.18□□□□□ -0.3
COL5A1-201ENST00000371817 GOLT1AQ6ZVE7 132 aa13.18□□□□□ -0.3
COL5A1-201ENST00000371817 A0A0U1RQV5 110 aa13.18□□□□□ -0.3
COL5A1-201ENST00000371817 HIGD1CA8MV81 97 aa13.18□□□□□ -0.3
COL5A1-201ENST00000371817 FSTP19883 344 aa13.18□□□□□ -0.3
COL5A1-201ENST00000371817 VN1R2Q8NFZ6 395 aa13.18□□□□□ -0.3
COL5A1-201ENST00000371817 CCL4L1Q8NHW4 92 aa13.18□□□□□ -0.3
COL5A1-201ENST00000371817 SMIM8Q96KF7 97 aa13.18□□□□□ -0.3
COL5A1-201ENST00000371817 PRSS12P56730 875 aa13.18□□□□□ -0.3
COL5A1-201ENST00000371817 EAF1Q96JC9 268 aaPredicted RBP13.18□□□□□ -0.3
COL5A1-201ENST00000371817 CYP2G1PQ6ZSU1 146 aa13.18□□□□□ -0.3
COL5A1-201ENST00000371817 DDB2Q92466 427 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms