RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 MALP21145 153 aa6.22□□□□□ -1.41
VPS13A-202ENST00000357409 VDAC2P45880 294 aaPredicted RBP6.22□□□□□ -1.41
VPS13A-202ENST00000357409 PHYHIPLQ96FC7 376 aa6.22□□□□□ -1.41
VPS13A-202ENST00000357409 UTRNP46939 3433 aa6.22□□□□□ -1.41
VPS13A-202ENST00000357409 LOC390937A0A1W2PQ73 354 aa6.22□□□□□ -1.41
VPS13A-202ENST00000357409 NPIPB6E9PJ23 425 aa6.22□□□□□ -1.41
VPS13A-202ENST00000357409 SLC25A47Q6Q0C1 308 aa6.22□□□□□ -1.41
VPS13A-202ENST00000357409 EVPLQ92817 2033 aa6.22□□□□□ -1.41
VPS13A-202ENST00000357409 TTC3P53804 2025 aa6.22□□□□□ -1.41
VPS13A-202ENST00000357409 A0A1W2PS18 150 aa6.22□□□□□ -1.41
VPS13A-202ENST00000357409 DRAM1Q8N682 238 aa6.22□□□□□ -1.41
VPS13A-202ENST00000357409 NUDT10Q8NFP7 164 aa6.22□□□□□ -1.41
VPS13A-202ENST00000357409 VWCEQ96DN2 955 aa6.22□□□□□ -1.41
VPS13A-202ENST00000357409 ZNF625Q96I27 306 aaPredicted RBP6.22□□□□□ -1.41
VPS13A-202ENST00000357409 KCNS1Q96KK3 526 aa6.22□□□□□ -1.41
VPS13A-202ENST00000357409 KLHDC3Q9BQ90 382 aa6.22□□□□□ -1.41
VPS13A-202ENST00000357409 GATA4P43694 442 aa6.22□□□□□ -1.41
VPS13A-202ENST00000357409 Q5BKY6 102 aa6.22□□□□□ -1.41
VPS13A-202ENST00000357409 SELENOHQ8IZQ5 122 aaKnown RBP6.22□□□□□ -1.41
VPS13A-202ENST00000357409 FAM89BQ8N5H3 189 aa6.22□□□□□ -1.41
VPS13A-202ENST00000357409 SP7Q8TDD2 431 aaPredicted RBP6.22□□□□□ -1.41
VPS13A-202ENST00000357409 FAM131CQ96AQ9 280 aa6.22□□□□□ -1.41
VPS13A-202ENST00000357409 HIST1H4GQ99525 98 aa6.22□□□□□ -1.41
VPS13A-202ENST00000357409 A0A1W2PPC1 479 aa6.22□□□□□ -1.41
VPS13A-202ENST00000357409 EFEMP2O95967 443 aa6.22□□□□□ -1.41
VPS13A-202ENST00000357409 HIST2H2BCQ6DN03 193 aa6.22□□□□□ -1.41
VPS13A-202ENST00000357409 SLC25A42Q86VD7 318 aa6.22□□□□□ -1.41
VPS13A-202ENST00000357409 LSMEM1Q8N8F7 131 aa6.22□□□□□ -1.41
VPS13A-202ENST00000357409 NABP2Q9BQ15 211 aa6.22□□□□□ -1.41
VPS13A-202ENST00000357409 HSPB9Q9BQS6 159 aa6.22□□□□□ -1.41
VPS13A-202ENST00000357409 HSPB8Q9UJY1 196 aa6.22□□□□□ -1.41
VPS13A-202ENST00000357409 TNFRSF18Q9Y5U5 241 aa6.22□□□□□ -1.41
VPS13A-202ENST00000357409 C7orf77A4D0Y5 90 aa6.21□□□□□ -1.41
VPS13A-202ENST00000357409 GZMBP10144 247 aa6.21□□□□□ -1.41
VPS13A-202ENST00000357409 GP1BAP07359 652 aa6.21□□□□□ -1.41
VPS13A-202ENST00000357409 C10orf55Q5SWW7 151 aa6.21□□□□□ -1.41
VPS13A-202ENST00000357409 TCF24Q7RTU0 167 aa6.21□□□□□ -1.41
VPS13A-202ENST00000357409 RNF133Q8WVZ7 376 aa6.21□□□□□ -1.41
VPS13A-202ENST00000357409 ZNF703Q9H7S9 590 aaPredicted RBP6.21□□□□□ -1.41
VPS13A-202ENST00000357409 DEPPQ9NTK1 212 aa6.21□□□□□ -1.41
VPS13A-202ENST00000357409 GLI3P10071 1580 aa6.21□□□□□ -1.41
VPS13A-202ENST00000357409 UBR2Q8IWV8 1755 aa6.21□□□□□ -1.41
VPS13A-202ENST00000357409 TRGV4A0A0C4DH28 118 aa6.21□□□□□ -1.41
VPS13A-202ENST00000357409 TCF21O43680 179 aa6.21□□□□□ -1.41
VPS13A-202ENST00000357409 CDS2O95674 445 aa6.21□□□□□ -1.41
VPS13A-202ENST00000357409 RPRMLQ8N4K4 120 aa6.21□□□□□ -1.41
VPS13A-202ENST00000357409 MARS2Q96GW9 593 aaKnown RBP6.21□□□□□ -1.41
VPS13A-202ENST00000357409 MCRIP2Q9BUT9 160 aaKnown RBP6.21□□□□□ -1.41
VPS13A-202ENST00000357409 NEU3Q9UQ49 428 aa6.21□□□□□ -1.41
VPS13A-202ENST00000357409 DDX60LQ5H9U9 1706 aaKnown RBP6.21□□□□□ -1.42
VPS13A-202ENST00000357409 KNCNA6PVL3 124 aa6.21□□□□□ -1.42
VPS13A-202ENST00000357409 PGA5P0DJD9 388 aa6.21□□□□□ -1.42
VPS13A-202ENST00000357409 EGR4Q05215 589 aa6.21□□□□□ -1.42
VPS13A-202ENST00000357409 SYT8Q8NBV8 401 aa6.21□□□□□ -1.42
VPS13A-202ENST00000357409 JMJD8Q96S16 334 aa6.21□□□□□ -1.42
VPS13A-202ENST00000357409 SEMA5BQ9P283 1151 aa6.21□□□□□ -1.42
VPS13A-202ENST00000357409 CXorf1O96002 111 aa6.21□□□□□ -1.42
VPS13A-202ENST00000357409 CLPSP04118 112 aa6.21□□□□□ -1.42
VPS13A-202ENST00000357409 ASAH2BP0C7U1 165 aa6.21□□□□□ -1.42
VPS13A-202ENST00000357409 HKR1P10072 659 aa6.21□□□□□ -1.42
VPS13A-202ENST00000357409 ZNF324BQ6AW86 544 aaPredicted RBP6.21□□□□□ -1.42
VPS13A-202ENST00000357409 RFNGQ9Y644 331 aa6.21□□□□□ -1.42
VPS13A-202ENST00000357409 HLA-DQB1P01920 261 aa6.21□□□□□ -1.42
VPS13A-202ENST00000357409 ASPHD1Q5U4P2 390 aa6.21□□□□□ -1.42
VPS13A-202ENST00000357409 WDYHV1Q96HA8 205 aa6.21□□□□□ -1.42
VPS13A-202ENST00000357409 DNAJC4Q9NNZ3 241 aa6.21□□□□□ -1.42
VPS13A-202ENST00000357409 UMODP07911 640 aa6.21□□□□□ -1.42
VPS13A-202ENST00000357409 TFF3Q07654 80 aa6.21□□□□□ -1.42
VPS13A-202ENST00000357409 IL24Q13007 206 aa6.21□□□□□ -1.42
VPS13A-202ENST00000357409 RNF212Q495C1 297 aa6.21□□□□□ -1.42
VPS13A-202ENST00000357409 ZNF506Q5JVG8 444 aa6.21□□□□□ -1.42
VPS13A-202ENST00000357409 FAM209BQ5JX69 171 aa6.21□□□□□ -1.42
VPS13A-202ENST00000357409 ZNF729A6NN14 1252 aaPredicted RBP6.21□□□□□ -1.42
VPS13A-202ENST00000357409 C17orf98A8MV24 154 aa6.21□□□□□ -1.42
VPS13A-202ENST00000357409 ZXDCQ2QGD7 858 aaPredicted RBP6.21□□□□□ -1.42
VPS13A-202ENST00000357409 PARLQ9H300 379 aa6.21□□□□□ -1.42
VPS13A-202ENST00000357409 OPN4Q9UHM6 478 aa6.21□□□□□ -1.42
VPS13A-202ENST00000357409 IGHV3-16A0A0C4DH30 117 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 ATP5G3P48201 142 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 ZNF831Q5JPB2 1677 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 CD99P14209 185 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 P2RY1P47900 373 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 TCTEX1D1Q8N7M0 179 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 OR9G4Q8NGQ1 327 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 CITED2Q99967 270 aaPredicted RBP6.2□□□□□ -1.42
VPS13A-202ENST00000357409 ESM1Q9NQ30 184 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 MBD3L4A6NDZ8 208 aaPredicted RBP6.2□□□□□ -1.42
VPS13A-202ENST00000357409 MBD3L3A6NE82 208 aaPredicted RBP6.2□□□□□ -1.42
VPS13A-202ENST00000357409 MBD3L5A6NJ08 208 aaPredicted RBP6.2□□□□□ -1.42
VPS13A-202ENST00000357409 FAM27BQ5VT28 67 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 FAM19A2Q8N3H0 131 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 MBD3L2Q8NHZ7 208 aaPredicted RBP6.2□□□□□ -1.42
VPS13A-202ENST00000357409 C14orf144Q96I85 54 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 MRPL20Q9BYC9 149 aaKnown RBP6.2□□□□□ -1.42
VPS13A-202ENST00000357409 COL22A1Q8NFW1 1626 aaPredicted RBP6.2□□□□□ -1.42
VPS13A-202ENST00000357409 LGALS3P17931 250 aaKnown RBP6.2□□□□□ -1.42
VPS13A-202ENST00000357409 RAB24Q969Q5 203 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 MYH7BA7E2Y1 1941 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 CXorf65A6NEN9 183 aa6.2□□□□□ -1.42
VPS13A-202ENST00000357409 CGB3P0DN86 165 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms