RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 IGKV1-8A0A0C4DH67 115 aa10.8□□□□□ -0.68
SDC3-201ENST00000336798 C5orf67F2Z3F1 127 aa10.8□□□□□ -0.68
SDC3-201ENST00000336798 EGR1P18146 543 aa10.8□□□□□ -0.68
SDC3-201ENST00000336798 SRIP30626 198 aa10.8□□□□□ -0.68
SDC3-201ENST00000336798 ZNF506Q5JVG8 444 aa10.8□□□□□ -0.68
SDC3-201ENST00000336798 TMEM170BQ5T4T1 132 aa10.8□□□□□ -0.68
SDC3-201ENST00000336798 DERL1Q9BUN8 251 aa10.8□□□□□ -0.68
SDC3-201ENST00000336798 CD69Q07108 199 aa10.8□□□□□ -0.68
SDC3-201ENST00000336798 NPIPB3Q92617 1050 aa10.8□□□□□ -0.68
SDC3-201ENST00000336798 SPSB2Q99619 263 aa10.8□□□□□ -0.68
SDC3-201ENST00000336798 CDC42EP3Q9UKI2 254 aa10.8□□□□□ -0.68
SDC3-201ENST00000336798 PAPPAQ13219 1627 aa10.8□□□□□ -0.68
SDC3-201ENST00000336798 ST6GALNAC3Q8NDV1 305 aa10.8□□□□□ -0.68
SDC3-201ENST00000336798 DUX3Q96PT4 197 aa10.8□□□□□ -0.68
SDC3-201ENST00000336798 NRIP2Q9BQI9 281 aa10.8□□□□□ -0.68
SDC3-201ENST00000336798 CLEC7AQ9BXN2 247 aa10.8□□□□□ -0.68
SDC3-201ENST00000336798 TMEM222Q9H0R3 208 aa10.8□□□□□ -0.68
SDC3-201ENST00000336798 LOC101059948A0A1B0GTJ6 334 aa10.8□□□□□ -0.68
SDC3-201ENST00000336798 H0YL77 283 aa10.8□□□□□ -0.68
SDC3-201ENST00000336798 TAF15Q92804 592 aaKnown RBP eCLIP10.8□□□□□ -0.68
SDC3-201ENST00000336798 ZP4Q12836 540 aa10.79□□□□□ -0.68
SDC3-201ENST00000336798 OR10S1Q8NGN2 331 aa10.79□□□□□ -0.68
SDC3-201ENST00000336798 YAE1D1Q9NRH1 226 aa10.79□□□□□ -0.68
SDC3-201ENST00000336798 TMEM74BQ9NUR3 256 aa10.79□□□□□ -0.68
SDC3-201ENST00000336798 MARCH11A6NNE9 402 aa10.79□□□□□ -0.68
SDC3-201ENST00000336798 ZNF815PA8K554 130 aa10.79□□□□□ -0.68
SDC3-201ENST00000336798 KCNK17Q96T54 332 aa10.79□□□□□ -0.68
SDC3-201ENST00000336798 NPIPB11E5RHQ5 1161 aa10.79□□□□□ -0.68
SDC3-201ENST00000336798 SNAI2O43623 268 aa10.79□□□□□ -0.68
SDC3-201ENST00000336798 C1QAP02745 245 aa10.79□□□□□ -0.68
SDC3-201ENST00000336798 C11orf44Q8N8P7 122 aa10.79□□□□□ -0.68
SDC3-201ENST00000336798 HIST1H2BAQ96A08 127 aa10.79□□□□□ -0.68
SDC3-201ENST00000336798 RRHO14718 337 aa10.79□□□□□ -0.68
SDC3-201ENST00000336798 DXOO77932 396 aaKnown RBP10.79□□□□□ -0.68
SDC3-201ENST00000336798 DNAL4O96015 105 aa10.79□□□□□ -0.68
SDC3-201ENST00000336798 NIT1Q86X76 327 aa10.79□□□□□ -0.68
SDC3-201ENST00000336798 EPOPA6NHQ4 379 aa10.79□□□□□ -0.68
SDC3-201ENST00000336798 LIPFP07098 398 aa10.79□□□□□ -0.68
SDC3-201ENST00000336798 HKR1P10072 659 aa10.79□□□□□ -0.68
SDC3-201ENST00000336798 FAM27E3Q08E93 113 aa10.79□□□□□ -0.68
SDC3-201ENST00000336798 LINC00305Q7Z4B0 112 aa10.79□□□□□ -0.68
SDC3-201ENST00000336798 LURAP1LQ8IV03 231 aa10.79□□□□□ -0.68
SDC3-201ENST00000336798 TMEM101Q96IK0 257 aa10.79□□□□□ -0.68
SDC3-201ENST00000336798 AKAP11Q9UKA4 1901 aa10.78□□□□□ -0.68
SDC3-201ENST00000336798 IGHV3-11P01762 117 aa10.78□□□□□ -0.68
SDC3-201ENST00000336798 TSPOP30536 169 aa10.78□□□□□ -0.68
SDC3-201ENST00000336798 RNASE4P34096 147 aaKnown RBP10.78□□□□□ -0.68
SDC3-201ENST00000336798 GLMPQ8WWB7 406 aa10.78□□□□□ -0.68
SDC3-201ENST00000336798 CHRNA10Q9GZZ6 450 aa10.78□□□□□ -0.68
SDC3-201ENST00000336798 LOC390937A0A1W2PQ73 354 aa10.78□□□□□ -0.68
SDC3-201ENST00000336798 CFDP00746 253 aaPredicted RBP10.78□□□□□ -0.68
SDC3-201ENST00000336798 C10orf126Q8N4M7 172 aa10.78□□□□□ -0.68
SDC3-201ENST00000336798 FDCSPQ8NFU4 85 aa10.78□□□□□ -0.68
SDC3-201ENST00000336798 AQP10Q96PS8 301 aa10.78□□□□□ -0.68
SDC3-201ENST00000336798 TRAV8-6A0A0B4J262 113 aa10.78□□□□□ -0.68
SDC3-201ENST00000336798 UNQ9370/PRO34162Q6UXP9 181 aa10.78□□□□□ -0.68
SDC3-201ENST00000336798 KIR2DL4Q99706 377 aa10.78□□□□□ -0.68
SDC3-201ENST00000336798 WFDC6Q9BQY6 131 aa10.78□□□□□ -0.68
SDC3-201ENST00000336798 HS3ST3B1Q9Y662 390 aa10.78□□□□□ -0.68
SDC3-201ENST00000336798 COX6A1P12074 109 aa10.78□□□□□ -0.68
SDC3-201ENST00000336798 ZNF818PQ6ZRF7 136 aa10.78□□□□□ -0.68
SDC3-201ENST00000336798 PILRBQ9UKJ0 227 aa10.78□□□□□ -0.68
SDC3-201ENST00000336798 MYO5AQ9Y4I1 1855 aaKnown RBP10.78□□□□□ -0.68
SDC3-201ENST00000336798 SERF2P84101 59 aa10.78□□□□□ -0.68
SDC3-201ENST00000336798 PRSS53Q2L4Q9 553 aa10.78□□□□□ -0.68
SDC3-201ENST00000336798 CHCHD2P9Q5T1J5 151 aaPredicted RBP10.78□□□□□ -0.68
SDC3-201ENST00000336798 TMEM45BQ96B21 275 aa10.78□□□□□ -0.68
SDC3-201ENST00000336798 TNFRSF18Q9Y5U5 241 aa10.78□□□□□ -0.68
SDC3-201ENST00000336798 STARD6P59095 220 aa10.77□□□□□ -0.68
SDC3-201ENST00000336798 SLC25A47Q6Q0C1 308 aa10.77□□□□□ -0.68
SDC3-201ENST00000336798 C1orf174Q8IYL3 243 aa10.77□□□□□ -0.68
SDC3-201ENST00000336798 FOXA2Q9Y261 457 aaPredicted RBP10.77□□□□□ -0.68
SDC3-201ENST00000336798 LHFPL6Q9Y693 200 aa10.77□□□□□ -0.68
SDC3-201ENST00000336798 IGKV1D-33P01593 117 aa10.77□□□□□ -0.69
SDC3-201ENST00000336798 IGKV1-33P01594 117 aa10.77□□□□□ -0.69
SDC3-201ENST00000336798 SELENOTP62341 195 aa10.77□□□□□ -0.69
SDC3-201ENST00000336798 ICAM4Q14773 271 aa10.77□□□□□ -0.69
SDC3-201ENST00000336798 OR51G1Q8NGK1 321 aa10.77□□□□□ -0.69
SDC3-201ENST00000336798 CD1AP06126 327 aa10.77□□□□□ -0.69
SDC3-201ENST00000336798 C8orf88P0DMB2 117 aa10.77□□□□□ -0.69
SDC3-201ENST00000336798 MEF2BQ02080 365 aaPredicted RBP10.77□□□□□ -0.69
SDC3-201ENST00000336798 C1orf53Q5VUE5 145 aa10.77□□□□□ -0.69
SDC3-201ENST00000336798 C12orf54Q6X4T0 127 aa10.77□□□□□ -0.69
SDC3-201ENST00000336798 OR9G1Q8NH87 305 aa10.77□□□□□ -0.69
SDC3-201ENST00000336798 FBXL15Q9H469 300 aa10.77□□□□□ -0.69
SDC3-201ENST00000336798 ZNF107Q9UII5 783 aaPredicted RBP10.77□□□□□ -0.69
SDC3-201ENST00000336798 CLDN16Q9Y5I7 305 aa10.77□□□□□ -0.69
SDC3-201ENST00000336798 LINC01587Q99440 93 aa10.77□□□□□ -0.69
SDC3-201ENST00000336798 ANAPC13Q9BS18 74 aa10.77□□□□□ -0.69
SDC3-201ENST00000336798 TRAV30A0A087WSZ9 112 aa10.77□□□□□ -0.69
SDC3-201ENST00000336798 CELA3AP09093 270 aa10.77□□□□□ -0.69
SDC3-201ENST00000336798 HSPE1P61604 102 aaKnown RBP10.77□□□□□ -0.69
SDC3-201ENST00000336798 WFDC12Q8WWY7 111 aa10.77□□□□□ -0.69
SDC3-201ENST00000336798 TUBD1Q9UJT1 453 aa10.77□□□□□ -0.69
SDC3-201ENST00000336798 NUP214P35658 2090 aaPredicted RBP10.77□□□□□ -0.69
SDC3-201ENST00000336798 TRPM3Q9HCF6 1732 aaPredicted RBP10.76□□□□□ -0.69
SDC3-201ENST00000336798 TRAV24A0A0B4J272 114 aa10.76□□□□□ -0.69
SDC3-201ENST00000336798 NPIPB9F8W1W9 429 aa10.76□□□□□ -0.69
SDC3-201ENST00000336798 FAM169BQ8N8A8 192 aa10.76□□□□□ -0.69
SDC3-201ENST00000336798 SAP25Q8TEE9 199 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms