RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 SEPSECSQ9HD40 501 aaKnown RBP11.28□□□□□ -0.6
CCDC88C-201ENST00000331194 DLL3Q9NYJ7 618 aa11.28□□□□□ -0.6
CCDC88C-201ENST00000331194 DKK1O94907 266 aa11.28□□□□□ -0.6
CCDC88C-201ENST00000331194 VAMP5O95183 116 aa11.28□□□□□ -0.6
CCDC88C-201ENST00000331194 CD46P15529 392 aa11.28□□□□□ -0.6
CCDC88C-201ENST00000331194 HOXA4Q00056 320 aaPredicted RBP11.28□□□□□ -0.6
CCDC88C-201ENST00000331194 SLC24A4Q8NFF2 622 aa11.28□□□□□ -0.6
CCDC88C-201ENST00000331194 OR4B1Q8NGF8 309 aa11.28□□□□□ -0.6
CCDC88C-201ENST00000331194 RNF2Q99496 336 aa11.28□□□□□ -0.6
CCDC88C-201ENST00000331194 STRADBQ9C0K7 418 aa11.28□□□□□ -0.6
CCDC88C-201ENST00000331194 CSTL1Q9H114 145 aa11.28□□□□□ -0.6
CCDC88C-201ENST00000331194 PROK2Q9HC23 129 aa11.28□□□□□ -0.6
CCDC88C-201ENST00000331194 UQCR10Q9UDW1 63 aa11.28□□□□□ -0.6
CCDC88C-201ENST00000331194 DUX1O43812 170 aa11.27□□□□□ -0.6
CCDC88C-201ENST00000331194 PDE6DO43924 150 aa11.27□□□□□ -0.6
CCDC88C-201ENST00000331194 NTF3P20783 257 aa11.27□□□□□ -0.6
CCDC88C-201ENST00000331194 TCL1AP56279 114 aa11.27□□□□□ -0.6
CCDC88C-201ENST00000331194 KRTAP27-1Q3LI81 207 aa11.27□□□□□ -0.6
CCDC88C-201ENST00000331194 PRRG4Q9BZD6 226 aa11.27□□□□□ -0.6
CCDC88C-201ENST00000331194 PRO3102Q9H379 93 aa11.27□□□□□ -0.6
CCDC88C-201ENST00000331194 ZNF586Q9NXT0 402 aa11.27□□□□□ -0.6
CCDC88C-201ENST00000331194 A0A1W2PPV4 95 aa11.27□□□□□ -0.61
CCDC88C-201ENST00000331194 C5orf49A4QMS7 147 aa11.27□□□□□ -0.61
CCDC88C-201ENST00000331194 CXCL13O43927 109 aa11.27□□□□□ -0.61
CCDC88C-201ENST00000331194 C3orf79P0CE67 100 aa11.27□□□□□ -0.61
CCDC88C-201ENST00000331194 ESDP10768 282 aa11.27□□□□□ -0.61
CCDC88C-201ENST00000331194 CA6P23280 308 aa11.27□□□□□ -0.61
CCDC88C-201ENST00000331194 ZNF83P51522 516 aa11.27□□□□□ -0.61
CCDC88C-201ENST00000331194 FOXG1P55316 489 aaPredicted RBP11.27□□□□□ -0.61
CCDC88C-201ENST00000331194 GFRA1P56159 465 aa11.27□□□□□ -0.61
CCDC88C-201ENST00000331194 SRSF7Q16629 238 aaKnown RBP eCLIP11.27□□□□□ -0.61
CCDC88C-201ENST00000331194 SYT13Q7L8C5 426 aa11.27□□□□□ -0.61
CCDC88C-201ENST00000331194 OR2M7Q8NG81 312 aa11.27□□□□□ -0.61
CCDC88C-201ENST00000331194 ORAOV1Q8WV07 137 aa11.27□□□□□ -0.61
CCDC88C-201ENST00000331194 ZFHX4Q86UP3 3567 aa11.27□□□□□ -0.61
CCDC88C-201ENST00000331194 A0A1W2PS18 150 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 S1PR2O95136 353 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 PPBPP02775 128 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 HSPB7Q9UBY9 170 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 YTHDF2Q9Y5A9 579 aaKnown RBP11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 FAM90A10PA6NDY2 464 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 FAM90A18PA6NE21 464 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 FAM90A16PA6NEW6 464 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 FAM90A20PA6NIJ5 464 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 FAM90A8PA6NJQ4 464 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 FAM90A7PA6NKC0 464 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 FAM90A22PA8MWA6 464 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 FAM90A12PA8MX19 464 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 FAM90A5PA8MXJ8 464 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 FAM90A23PA8MXZ1 464 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 FAM90A15PP0C7V4 464 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 FAM90A13PP0C7W8 464 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 FAM90A14PP0C7W9 464 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 FAM90A24PP0C7X0 464 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 RPL19P84098 196 aaKnown RBP11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 TRIP6Q15654 476 aaKnown RBP11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 ABHD3Q8WU67 409 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 GUCD1Q96NT3 240 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 LIN7CQ9NUP9 197 aaKnown RBP11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 NAT8BQ9UHF3 227 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 TRAPPC2LQ9UL33 140 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 DSPP15924 2871 aaKnown RBP11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 A0A0G2JMM0 328 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 A0A1W2PPB8 328 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 A0A1W2PR77 199 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 A0A1W2PRS3 328 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 KIR3DP1A8MWS1 328 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 SCRG1O75711 98 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 EPHA8P29322 1005 aaPredicted RBP11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 FXYD3Q14802 87 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 C5orf30Q96GV9 206 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 KCNIP2Q9NS61 270 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 IL36BQ9NZH7 164 aa11.26□□□□□ -0.61
CCDC88C-201ENST00000331194 ZNF503-AS2A6NEH8 195 aa11.25□□□□□ -0.61
CCDC88C-201ENST00000331194 LRRC30A6NM36 301 aa11.25□□□□□ -0.61
CCDC88C-201ENST00000331194 LIFP15018 202 aa11.25□□□□□ -0.61
CCDC88C-201ENST00000331194 LGALS4P56470 323 aa11.25□□□□□ -0.61
CCDC88C-201ENST00000331194 RPL31P62899 125 aaKnown RBP11.25□□□□□ -0.61
CCDC88C-201ENST00000331194 CEACAM21Q3KPI0 293 aa11.25□□□□□ -0.61
CCDC88C-201ENST00000331194 MMD2Q8IY49 270 aa11.25□□□□□ -0.61
CCDC88C-201ENST00000331194 CPT1CQ8TCG5 803 aa11.25□□□□□ -0.61
CCDC88C-201ENST00000331194 C1QTNF5Q9BXJ0 243 aa11.25□□□□□ -0.61
CCDC88C-201ENST00000331194 COX11Q9Y6N1 276 aa11.25□□□□□ -0.61
CCDC88C-201ENST00000331194 DCHS1Q96JQ0 3298 aa11.25□□□□□ -0.61
CCDC88C-201ENST00000331194 NCKAP5O14513 1909 aa11.25□□□□□ -0.61
CCDC88C-201ENST00000331194 IGLV3-12A0A075B6K2 115 aa11.25□□□□□ -0.61
CCDC88C-201ENST00000331194 C17orf98A8MV24 154 aa11.25□□□□□ -0.61
CCDC88C-201ENST00000331194 BRWD1-AS2P59051 145 aa11.25□□□□□ -0.61
CCDC88C-201ENST00000331194 MRPL21Q7Z2W9 205 aaKnown RBP11.25□□□□□ -0.61
CCDC88C-201ENST00000331194 DPRXA6NFQ7 191 aa11.24□□□□□ -0.61
CCDC88C-201ENST00000331194 DEGS1O15121 323 aa11.24□□□□□ -0.61
CCDC88C-201ENST00000331194 ZNF253O75346 499 aa11.24□□□□□ -0.61
CCDC88C-201ENST00000331194 TSPOP30536 169 aa11.24□□□□□ -0.61
CCDC88C-201ENST00000331194 FBLN7Q53RD9 439 aa11.24□□□□□ -0.61
CCDC88C-201ENST00000331194 SPATA31B1PQ5VZV4 182 aa11.24□□□□□ -0.61
CCDC88C-201ENST00000331194 MIC13Q5XKP0 118 aa11.24□□□□□ -0.61
CCDC88C-201ENST00000331194 SPSB4Q96A44 273 aa11.24□□□□□ -0.61
CCDC88C-201ENST00000331194 LOXL4Q96JB6 756 aa11.24□□□□□ -0.61
CCDC88C-201ENST00000331194 GVINP1Q7Z2Y8 2422 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms