RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 IGLV3-19P01714 112 aa9.86□□□□□ -0.83
VPS39-201ENST00000318006 RTP5Q14D33 572 aa9.86□□□□□ -0.83
VPS39-201ENST00000318006 PRDM13Q9H4Q3 707 aa9.86□□□□□ -0.83
VPS39-201ENST00000318006 EGR1P18146 543 aa9.85□□□□□ -0.83
VPS39-201ENST00000318006 TMEM177Q53S58 311 aa9.85□□□□□ -0.83
VPS39-201ENST00000318006 FAM117AQ9C073 453 aa9.85□□□□□ -0.83
VPS39-201ENST00000318006 AICDAQ9GZX7 198 aa9.85□□□□□ -0.83
VPS39-201ENST00000318006 TRAV9-1A0A075B6T8 112 aa9.85□□□□□ -0.83
VPS39-201ENST00000318006 PGPA6NDG6 321 aa9.85□□□□□ -0.83
VPS39-201ENST00000318006 GOSR1O95249 250 aa9.85□□□□□ -0.83
VPS39-201ENST00000318006 TBX6O95947 436 aaPredicted RBP9.85□□□□□ -0.83
VPS39-201ENST00000318006 ZNF735P0CB33 412 aa9.85□□□□□ -0.83
VPS39-201ENST00000318006 NUTF2P61970 127 aaKnown RBP9.85□□□□□ -0.83
VPS39-201ENST00000318006 Q5PR19 223 aa9.85□□□□□ -0.83
VPS39-201ENST00000318006 SLC25A28Q96A46 364 aa9.85□□□□□ -0.83
VPS39-201ENST00000318006 RNF126Q9BV68 326 aa9.85□□□□□ -0.83
VPS39-201ENST00000318006 REG4Q9BYZ8 158 aa9.85□□□□□ -0.83
VPS39-201ENST00000318006 SIP14410 1827 aa9.85□□□□□ -0.83
VPS39-201ENST00000318006 PDCD11Q14690 1871 aaKnown RBP9.85□□□□□ -0.83
VPS39-201ENST00000318006 THY1P04216 161 aa9.85□□□□□ -0.83
VPS39-201ENST00000318006 C8orf88P0DMB2 117 aa9.85□□□□□ -0.83
VPS39-201ENST00000318006 GPHA2Q96T91 129 aa9.85□□□□□ -0.83
VPS39-201ENST00000318006 HIST1H2BLQ99880 126 aa9.85□□□□□ -0.83
VPS39-201ENST00000318006 CLDN14O95500 239 aa9.85□□□□□ -0.83
VPS39-201ENST00000318006 COX6A1P12074 109 aa9.85□□□□□ -0.83
VPS39-201ENST00000318006 CA7P43166 264 aa9.85□□□□□ -0.83
VPS39-201ENST00000318006 PCOLCEQ15113 449 aa9.85□□□□□ -0.83
VPS39-201ENST00000318006 SPANXN1Q5VSR9 72 aa9.85□□□□□ -0.83
VPS39-201ENST00000318006 ZNF818PQ6ZRF7 136 aa9.85□□□□□ -0.83
VPS39-201ENST00000318006 ONECUT1Q9UBC0 465 aa9.85□□□□□ -0.83
VPS39-201ENST00000318006 HSPB7Q9UBY9 170 aa9.85□□□□□ -0.83
VPS39-201ENST00000318006 ASXL3Q9C0F0 2248 aa9.85□□□□□ -0.83
VPS39-201ENST00000318006 CEACAM18A8MTB9 384 aa9.84□□□□□ -0.83
VPS39-201ENST00000318006 ZG16O60844 167 aa9.84□□□□□ -0.83
VPS39-201ENST00000318006 MGPP08493 103 aa9.84□□□□□ -0.83
VPS39-201ENST00000318006 CEACAM3P40198 252 aa9.84□□□□□ -0.83
VPS39-201ENST00000318006 EGR4Q05215 589 aa9.84□□□□□ -0.83
VPS39-201ENST00000318006 STPG1Q5TH74 334 aa9.84□□□□□ -0.83
VPS39-201ENST00000318006 CALHM1Q8IU99 346 aa9.84□□□□□ -0.83
VPS39-201ENST00000318006 HIST3H2BBQ8N257 126 aa9.84□□□□□ -0.83
VPS39-201ENST00000318006 IMMP2LQ96T52 175 aa9.84□□□□□ -0.83
VPS39-201ENST00000318006 TMEM106BQ9NUM4 274 aa9.84□□□□□ -0.83
VPS39-201ENST00000318006 LHFPL6Q9Y693 200 aa9.84□□□□□ -0.83
VPS39-201ENST00000318006 SNRPCP09234 159 aaKnown RBP9.84□□□□□ -0.83
VPS39-201ENST00000318006 LRRC75BQ2VPJ9 315 aa9.84□□□□□ -0.83
VPS39-201ENST00000318006 FBLN7Q53RD9 439 aa9.84□□□□□ -0.83
VPS39-201ENST00000318006 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.84□□□□□ -0.83
VPS39-201ENST00000318006 MOGAT3Q86VF5 341 aa9.84□□□□□ -0.83
VPS39-201ENST00000318006 NDUFS6O75380 124 aaKnown RBP9.84□□□□□ -0.83
VPS39-201ENST00000318006 TIAF1O95411 115 aa9.84□□□□□ -0.83
VPS39-201ENST00000318006 CD3EP07766 207 aa9.84□□□□□ -0.83
VPS39-201ENST00000318006 COX7A1P24310 79 aa9.84□□□□□ -0.83
VPS39-201ENST00000318006 CENPWQ5EE01 88 aa9.84□□□□□ -0.83
VPS39-201ENST00000318006 C1QL4Q86Z23 238 aa9.84□□□□□ -0.83
VPS39-201ENST00000318006 KCNS1Q96KK3 526 aa9.84□□□□□ -0.83
VPS39-201ENST00000318006 MAP1LC3AQ9H492 121 aa9.84□□□□□ -0.83
VPS39-201ENST00000318006 CACNA1EQ15878 2313 aa9.84□□□□□ -0.83
VPS39-201ENST00000318006 GCHFRP30047 84 aa9.84□□□□□ -0.83
VPS39-201ENST00000318006 RND1Q92730 232 aa9.84□□□□□ -0.83
VPS39-201ENST00000318006 RTBDNQ9BSG5 229 aaPredicted RBP9.84□□□□□ -0.83
VPS39-201ENST00000318006 SCNM1Q9BWG6 230 aa9.84□□□□□ -0.83
VPS39-201ENST00000318006 SFXN3Q9BWM7 321 aa9.84□□□□□ -0.83
VPS39-201ENST00000318006 SPCS1Q9Y6A9 102 aa9.84□□□□□ -0.83
VPS39-201ENST00000318006 PPIHO43447 177 aaKnown RBP9.83□□□□□ -0.84
VPS39-201ENST00000318006 C19orf24Q9BVV8 132 aa9.83□□□□□ -0.84
VPS39-201ENST00000318006 MRPL13Q9BYD1 178 aaKnown RBP9.83□□□□□ -0.84
VPS39-201ENST00000318006 FTH1P19P0C7X4 201 aa9.83□□□□□ -0.84
VPS39-201ENST00000318006 HBBP68871 147 aa9.83□□□□□ -0.84
VPS39-201ENST00000318006 KHDC1LQ5JSQ8 128 aa9.83□□□□□ -0.84
VPS39-201ENST00000318006 DERL1Q9BUN8 251 aa9.83□□□□□ -0.84
VPS39-201ENST00000318006 RNF7Q9UBF6 113 aa9.83□□□□□ -0.84
VPS39-201ENST00000318006 TMPRSS2O15393 492 aa9.83□□□□□ -0.84
VPS39-201ENST00000318006 DLEU1O43261 78 aa9.83□□□□□ -0.84
VPS39-201ENST00000318006 IL4P05112 153 aa9.83□□□□□ -0.84
VPS39-201ENST00000318006 CD5P06127 495 aa9.83□□□□□ -0.84
VPS39-201ENST00000318006 OR4A8P0C604 315 aa9.83□□□□□ -0.84
VPS39-201ENST00000318006 EMP1P54849 157 aa9.83□□□□□ -0.84
VPS39-201ENST00000318006 RPL31P62899 125 aaKnown RBP9.83□□□□□ -0.84
VPS39-201ENST00000318006 ICAM4Q14773 271 aa9.83□□□□□ -0.84
VPS39-201ENST00000318006 NPIPB13A6NJU9 1138 aa9.82□□□□□ -0.84
VPS39-201ENST00000318006 NPIPB4C9JG80 1138 aa9.82□□□□□ -0.84
VPS39-201ENST00000318006 H7C2G1 150 aa9.82□□□□□ -0.84
VPS39-201ENST00000318006 SLC25A17O43808 307 aa9.82□□□□□ -0.84
VPS39-201ENST00000318006 P2RY6Q15077 328 aa9.82□□□□□ -0.84
VPS39-201ENST00000318006 IZUMO4Q1ZYL8 232 aa9.82□□□□□ -0.84
VPS39-201ENST00000318006 RIPPLY2Q5TAB7 128 aa9.82□□□□□ -0.84
VPS39-201ENST00000318006 FAM214BQ7L5A3 538 aa9.82□□□□□ -0.84
VPS39-201ENST00000318006 HES7Q9BYE0 225 aa9.82□□□□□ -0.84
VPS39-201ENST00000318006 LRRC37A2A6NM11 1700 aa9.82□□□□□ -0.84
VPS39-201ENST00000318006 TMEM229AB2RXF0 380 aa9.82□□□□□ -0.84
VPS39-201ENST00000318006 SERF1AO75920 110 aa9.82□□□□□ -0.84
VPS39-201ENST00000318006 RPL23P62829 140 aaKnown RBP9.82□□□□□ -0.84
VPS39-201ENST00000318006 NEU1Q99519 415 aa9.82□□□□□ -0.84
VPS39-201ENST00000318006 SSBP3Q9BWW4 388 aaPredicted RBP9.82□□□□□ -0.84
VPS39-201ENST00000318006 PRDM6Q9NQX0 595 aa9.82□□□□□ -0.84
VPS39-201ENST00000318006 IGKV3D-11A0A0A0MRZ8 115 aa9.82□□□□□ -0.84
VPS39-201ENST00000318006 C19orf67A6NJJ6 358 aa9.82□□□□□ -0.84
VPS39-201ENST00000318006 C17orf51A8MQB3 221 aa9.82□□□□□ -0.84
VPS39-201ENST00000318006 NDUFS8O00217 210 aa9.82□□□□□ -0.84
VPS39-201ENST00000318006 LINC00614P0C842 121 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms