RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 HOXA5P20719 270 aa11.95□□□□□ -0.5
CSPG4-201ENST00000308508 FOXC2Q99958 501 aa11.95□□□□□ -0.5
CSPG4-201ENST00000308508 SF3B6Q9Y3B4 125 aaKnown RBP11.95□□□□□ -0.5
CSPG4-201ENST00000308508 TFPI2P48307 235 aa11.94□□□□□ -0.5
CSPG4-201ENST00000308508 ZNF658BQ4V348 819 aaPredicted RBP11.94□□□□□ -0.5
CSPG4-201ENST00000308508 A0A1W2PP11 408 aa11.94□□□□□ -0.5
CSPG4-201ENST00000308508 MPV17P39210 176 aa11.94□□□□□ -0.5
CSPG4-201ENST00000308508 HSPE1P61604 102 aaKnown RBP11.94□□□□□ -0.5
CSPG4-201ENST00000308508 PLAURQ03405 335 aa11.94□□□□□ -0.5
CSPG4-201ENST00000308508 ZNF146Q15072 292 aa11.94□□□□□ -0.5
CSPG4-201ENST00000308508 C21orf140B9A014 251 aa11.94□□□□□ -0.5
CSPG4-201ENST00000308508 LDLRAD4O15165 306 aa11.94□□□□□ -0.5
CSPG4-201ENST00000308508 CD8AP01732 235 aa11.94□□□□□ -0.5
CSPG4-201ENST00000308508 CXCL10P02778 98 aa11.94□□□□□ -0.5
CSPG4-201ENST00000308508 FAM159AQ6UWV7 190 aa11.94□□□□□ -0.5
CSPG4-201ENST00000308508 FAM60AQ9NP50 221 aa11.94□□□□□ -0.5
CSPG4-201ENST00000308508 GOLT1AQ6ZVE7 132 aa11.94□□□□□ -0.5
CSPG4-201ENST00000308508 TNFSF14O43557 240 aa11.94□□□□□ -0.5
CSPG4-201ENST00000308508 SLC25A53Q5H9E4 307 aa11.94□□□□□ -0.5
CSPG4-201ENST00000308508 C18orf15Q96N68 181 aa11.94□□□□□ -0.5
CSPG4-201ENST00000308508 NRXN3Q9Y4C0 1643 aa11.94□□□□□ -0.5
CSPG4-201ENST00000308508 OR2K2Q8NGT1 345 aa11.93□□□□□ -0.5
CSPG4-201ENST00000308508 ELOVL5Q9NYP7 299 aa11.93□□□□□ -0.5
CSPG4-201ENST00000308508 CCL27Q9Y4X3 112 aa11.93□□□□□ -0.5
CSPG4-201ENST00000308508 SIRT4Q9Y6E7 314 aaPredicted RBP11.93□□□□□ -0.5
CSPG4-201ENST00000308508 hCG_38984A0A1B0GV85 526 aa11.93□□□□□ -0.5
CSPG4-201ENST00000308508 EFNB1P98172 346 aa11.93□□□□□ -0.5
CSPG4-201ENST00000308508 SRSF5Q13243 272 aaKnown RBP11.93□□□□□ -0.5
CSPG4-201ENST00000308508 LPAR2Q9HBW0 351 aa11.93□□□□□ -0.5
CSPG4-201ENST00000308508 GCHFRP30047 84 aa11.93□□□□□ -0.5
CSPG4-201ENST00000308508 SNRPD3P62318 126 aaKnown RBP11.93□□□□□ -0.5
CSPG4-201ENST00000308508 FOXC1Q12948 553 aa11.93□□□□□ -0.5
CSPG4-201ENST00000308508 ST6GALNAC3Q8NDV1 305 aa11.93□□□□□ -0.5
CSPG4-201ENST00000308508 PLAC1Q9HBJ0 212 aa11.93□□□□□ -0.5
CSPG4-201ENST00000308508 NXPH1P58417 271 aa11.93□□□□□ -0.5
CSPG4-201ENST00000308508 CKS1BP61024 79 aa11.93□□□□□ -0.5
CSPG4-201ENST00000308508 HILPDAQ9Y5L2 63 aa11.93□□□□□ -0.5
CSPG4-201ENST00000308508 ABCA3Q99758 1704 aa11.93□□□□□ -0.5
CSPG4-201ENST00000308508 APOHP02749 345 aaPredicted RBP11.93□□□□□ -0.5
CSPG4-201ENST00000308508 FHITP49789 147 aa11.93□□□□□ -0.5
CSPG4-201ENST00000308508 OR11H4Q8NGC9 324 aa11.93□□□□□ -0.5
CSPG4-201ENST00000308508 SCGB3A1Q96QR1 104 aa11.93□□□□□ -0.5
CSPG4-201ENST00000308508 C16orf97H3BN30 126 aa11.93□□□□□ -0.5
CSPG4-201ENST00000308508 APOMO95445 188 aa11.93□□□□□ -0.5
CSPG4-201ENST00000308508 FAM106AQ4KMX7 169 aa11.93□□□□□ -0.5
CSPG4-201ENST00000308508 IGHV3OR16-12A0A075B7B8 117 aa11.92□□□□□ -0.5
CSPG4-201ENST00000308508 MEGF9Q9H1U4 602 aa11.92□□□□□ -0.5
CSPG4-201ENST00000308508 LAMTOR2Q9Y2Q5 125 aa11.92□□□□□ -0.5
CSPG4-201ENST00000308508 TNRC6CQ9HCJ0 1690 aaKnown RBP11.92□□□□□ -0.5
CSPG4-201ENST00000308508 TRBV7-9A0A0J9YWB2 115 aa11.92□□□□□ -0.5
CSPG4-201ENST00000308508 PGPEP1LA6NFU8 196 aa11.92□□□□□ -0.5
CSPG4-201ENST00000308508 TBR1Q16650 682 aa11.92□□□□□ -0.5
CSPG4-201ENST00000308508 TMEM30BQ3MIR4 351 aa11.92□□□□□ -0.5
CSPG4-201ENST00000308508 SHISA5Q8N114 240 aa11.92□□□□□ -0.5
CSPG4-201ENST00000308508 HOXB1P14653 301 aaPredicted RBP11.92□□□□□ -0.5
CSPG4-201ENST00000308508 C3AR1Q16581 482 aa11.92□□□□□ -0.5
CSPG4-201ENST00000308508 SAXO1Q8IYX7 474 aa11.92□□□□□ -0.5
CSPG4-201ENST00000308508 DPH3Q96FX2 82 aa11.92□□□□□ -0.5
CSPG4-201ENST00000308508 NABP2Q9BQ15 211 aa11.92□□□□□ -0.5
CSPG4-201ENST00000308508 IFNL4K9M1U5 179 aa11.92□□□□□ -0.5
CSPG4-201ENST00000308508 CISD3P0C7P0 127 aa11.92□□□□□ -0.5
CSPG4-201ENST00000308508 FTH1P19P0C7X4 201 aa11.92□□□□□ -0.5
CSPG4-201ENST00000308508 C1orf100Q5SVJ3 147 aa11.92□□□□□ -0.5
CSPG4-201ENST00000308508 A0A1B0GUT8 65 aa11.92□□□□□ -0.5
CSPG4-201ENST00000308508 CCL3P10147 92 aa11.92□□□□□ -0.5
CSPG4-201ENST00000308508 Q6AWC8 147 aa11.92□□□□□ -0.5
CSPG4-201ENST00000308508 OR5AN1Q8NGI8 311 aa11.92□□□□□ -0.5
CSPG4-201ENST00000308508 ZG16O60844 167 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 GZMMP51124 257 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 ZPLD1Q8TCW7 415 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 FBLIM1Q8WUP2 373 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 IGKV3OR2-268A0A0C4DH90 116 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 HRKO00198 91 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 PF4V1P10720 104 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 GPR183P32249 361 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 POC1AQ8NBT0 407 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 FMC1Q96HJ9 113 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 SSBP3Q9BWW4 388 aaPredicted RBP11.91□□□□□ -0.5
CSPG4-201ENST00000308508 USP54Q70EL1 1684 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 C9orf172C9J069 976 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 CNTFRP26992 372 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 UCP2P55851 309 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 FBLN7Q53RD9 439 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 Q6ZS52 159 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 CLDND2Q8NHS1 167 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 LOC105371267A0A1B0GV96 52 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 DXOO77932 396 aaKnown RBP11.91□□□□□ -0.5
CSPG4-201ENST00000308508 RFLNBQ8N5W9 214 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 GATAD1Q8WUU5 269 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 WDR54Q9H977 334 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 MYOFQ9NZM1 2061 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 UCP3P55916 312 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 LINC00305Q7Z4B0 112 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 PRDM13Q9H4Q3 707 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 ZNF815PA8K554 130 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 SLC25A20O43772 301 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 OR4X2Q8NGF9 303 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 CCL13Q99616 98 aa11.91□□□□□ -0.5
CSPG4-201ENST00000308508 LIMS1P48059 325 aa11.9□□□□□ -0.5
CSPG4-201ENST00000308508 CD200R1LQ6Q8B3 271 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms