RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 IGLV3-19P01714 112 aa16.36■□□□□ 0.21
UPF1-201ENST00000262803 CX3CL1P78423 397 aa16.36■□□□□ 0.21
UPF1-201ENST00000262803 SPSB2Q99619 263 aa16.36■□□□□ 0.21
UPF1-201ENST00000262803 TRBV9A0A0B4J1U6 114 aa16.36■□□□□ 0.21
UPF1-201ENST00000262803 CKS2P33552 79 aa16.36■□□□□ 0.21
UPF1-201ENST00000262803 FGFRL1Q8N441 504 aa16.36■□□□□ 0.21
UPF1-201ENST00000262803 SELENOHQ8IZQ5 122 aaKnown RBP16.36■□□□□ 0.21
UPF1-201ENST00000262803 SGMS2Q8NHU3 365 aa16.36■□□□□ 0.21
UPF1-201ENST00000262803 FAM216AQ8WUB2 273 aa16.36■□□□□ 0.21
UPF1-201ENST00000262803 MDKP21741 143 aaPredicted RBP16.36■□□□□ 0.21
UPF1-201ENST00000262803 TCTAP57738 103 aa16.36■□□□□ 0.21
UPF1-201ENST00000262803 TCF24Q7RTU0 167 aa16.36■□□□□ 0.21
UPF1-201ENST00000262803 PMCHL1Q16048 86 aa16.35■□□□□ 0.21
UPF1-201ENST00000262803 OSR1Q8TAX0 266 aaPredicted RBP16.35■□□□□ 0.21
UPF1-201ENST00000262803 TMSB15BA0A087X1C1 80 aa16.35■□□□□ 0.21
UPF1-201ENST00000262803 PGPA6NDG6 321 aa16.35■□□□□ 0.21
UPF1-201ENST00000262803 SLC25A17O43808 307 aa16.35■□□□□ 0.21
UPF1-201ENST00000262803 IGKV3-11P04433 115 aa16.35■□□□□ 0.21
UPF1-201ENST00000262803 CEBPDP49716 269 aaPredicted RBP16.35■□□□□ 0.21
UPF1-201ENST00000262803 MEF2BQ02080 365 aaPredicted RBP16.35■□□□□ 0.21
UPF1-201ENST00000262803 MEF2CQ06413 473 aaPredicted RBP16.35■□□□□ 0.21
UPF1-201ENST00000262803 SLC25A53Q5H9E4 307 aa16.35■□□□□ 0.21
UPF1-201ENST00000262803 CDCP2Q5VXM1 449 aa16.35■□□□□ 0.21
UPF1-201ENST00000262803 TDRD6O60522 2096 aaKnown RBP16.35■□□□□ 0.21
UPF1-201ENST00000262803 RGPD3A6NKT7 1758 aaPredicted RBP16.35■□□□□ 0.21
UPF1-201ENST00000262803 FBLL1A6NHQ2 334 aaKnown RBP16.35■□□□□ 0.21
UPF1-201ENST00000262803 CD74P04233 296 aa16.35■□□□□ 0.21
UPF1-201ENST00000262803 FAM57AQ8TBR7 257 aa16.35■□□□□ 0.21
UPF1-201ENST00000262803 OR5P3Q8WZ94 311 aa16.35■□□□□ 0.21
UPF1-201ENST00000262803 GGACTQ9BVM4 153 aa16.35■□□□□ 0.21
UPF1-201ENST00000262803 PARP14Q460N5 1801 aa16.35■□□□□ 0.21
UPF1-201ENST00000262803 TNFRSF9Q07011 255 aa16.35■□□□□ 0.21
UPF1-201ENST00000262803 SMUG1Q53HV7 270 aa16.35■□□□□ 0.21
UPF1-201ENST00000262803 OR51M1Q9H341 326 aa16.35■□□□□ 0.21
UPF1-201ENST00000262803 TMEM14DPA8MWL7 114 aa16.34■□□□□ 0.21
UPF1-201ENST00000262803 CA7P43166 264 aa16.34■□□□□ 0.21
UPF1-201ENST00000262803 SOSTQ9BQB4 213 aa16.34■□□□□ 0.21
UPF1-201ENST00000262803 IGHV3-21A0A0B4J1V1 117 aa16.34■□□□□ 0.21
UPF1-201ENST00000262803 EPOPA6NHQ4 379 aa16.34■□□□□ 0.21
UPF1-201ENST00000262803 AMY1AP04745 511 aa16.34■□□□□ 0.21
UPF1-201ENST00000262803 CSRP1P21291 193 aaKnown RBP16.34■□□□□ 0.21
UPF1-201ENST00000262803 ZNF826PQ6ZT77 177 aa16.34■□□□□ 0.21
UPF1-201ENST00000262803 FCGR2BP31994 310 aaPredicted RBP16.34■□□□□ 0.21
UPF1-201ENST00000262803 TFPI2P48307 235 aa16.34■□□□□ 0.21
UPF1-201ENST00000262803 GATAD1Q8WUU5 269 aa16.34■□□□□ 0.21
UPF1-201ENST00000262803 SPSB4Q96A44 273 aa16.34■□□□□ 0.21
UPF1-201ENST00000262803 GPHA2Q96T91 129 aa16.34■□□□□ 0.21
UPF1-201ENST00000262803 TIMP4Q99727 224 aa16.34■□□□□ 0.21
UPF1-201ENST00000262803 TLNRD1Q9H1K6 362 aa16.34■□□□□ 0.21
UPF1-201ENST00000262803 IL36RNQ9UBH0 155 aa16.34■□□□□ 0.21
UPF1-201ENST00000262803 LOC101059948A0A1B0GTJ6 334 aa16.34■□□□□ 0.21
UPF1-201ENST00000262803 MARCH11A6NNE9 402 aa16.34■□□□□ 0.21
UPF1-201ENST00000262803 SUCLG1P53597 346 aaKnown RBP16.34■□□□□ 0.21
UPF1-201ENST00000262803 NHLRC3Q5JS37 347 aa16.34■□□□□ 0.21
UPF1-201ENST00000262803 SBF2Q86WG5 1849 aa16.34■□□□□ 0.21
UPF1-201ENST00000262803 GVINP1Q7Z2Y8 2422 aa16.34■□□□□ 0.21
UPF1-201ENST00000262803 SRXN1Q9BYN0 137 aa16.33■□□□□ 0.21
UPF1-201ENST00000262803 A0A0B4J293 547 aa16.33■□□□□ 0.21
UPF1-201ENST00000262803 FXYD3Q14802 87 aa16.33■□□□□ 0.21
UPF1-201ENST00000262803 GPR146Q96CH1 333 aa16.33■□□□□ 0.21
UPF1-201ENST00000262803 ZNF703Q9H7S9 590 aaPredicted RBP16.33■□□□□ 0.21
UPF1-201ENST00000262803 HCP5Q6MZN7 132 aa16.33■□□□□ 0.2
UPF1-201ENST00000262803 SCN10AQ9Y5Y9 1956 aa16.33■□□□□ 0.2
UPF1-201ENST00000262803 GPX1P07203 203 aa16.32■□□□□ 0.2
UPF1-201ENST00000262803 TAF1LQ8IZX4 1826 aa16.32■□□□□ 0.2
UPF1-201ENST00000262803 KLK2P20151 261 aa16.32■□□□□ 0.2
UPF1-201ENST00000262803 TCF19Q9Y242 345 aa16.32■□□□□ 0.2
UPF1-201ENST00000262803 TMEM106BQ9NUM4 274 aa16.32■□□□□ 0.2
UPF1-201ENST00000262803 ARF6P62330 175 aa16.32■□□□□ 0.2
UPF1-201ENST00000262803 OR4X2Q8NGF9 303 aa16.32■□□□□ 0.2
UPF1-201ENST00000262803 MEGF10Q96KG7 1140 aa16.32■□□□□ 0.2
UPF1-201ENST00000262803 TNS1Q9HBL0 1735 aaKnown RBP16.32■□□□□ 0.2
UPF1-201ENST00000262803 IGHV3-72A0A0B4J1Y9 119 aa16.32■□□□□ 0.2
UPF1-201ENST00000262803 NDUFB4O95168 129 aa16.32■□□□□ 0.2
UPF1-201ENST00000262803 TP53RKQ96S44 253 aa16.32■□□□□ 0.2
UPF1-201ENST00000262803 SCN2AQ99250 2005 aa16.31■□□□□ 0.2
UPF1-201ENST00000262803 PKIAP61925 76 aa16.31■□□□□ 0.2
UPF1-201ENST00000262803 PNKDQ8N490 385 aa16.31■□□□□ 0.2
UPF1-201ENST00000262803 ZNF502Q8TBZ5 544 aa16.31■□□□□ 0.2
UPF1-201ENST00000262803 KIR2DL4Q99706 377 aa16.31■□□□□ 0.2
UPF1-201ENST00000262803 DPM3Q9P2X0 92 aa16.31■□□□□ 0.2
UPF1-201ENST00000262803 GREB1LQ9C091 1923 aaPredicted RBP16.31■□□□□ 0.2
UPF1-201ENST00000262803 CXorf65A6NEN9 183 aa16.31■□□□□ 0.2
UPF1-201ENST00000262803 DIRC3C9JPN6 131 aa16.31■□□□□ 0.2
UPF1-201ENST00000262803 PSMG4Q5JS54 123 aa16.31■□□□□ 0.2
UPF1-201ENST00000262803 ZNF418Q8TF45 676 aaPredicted RBP16.31■□□□□ 0.2
UPF1-201ENST00000262803 TMEM190Q8WZ59 177 aa16.31■□□□□ 0.2
UPF1-201ENST00000262803 TBX15Q96SF7 602 aa16.31■□□□□ 0.2
UPF1-201ENST00000262803 PSMG3Q9BT73 122 aaPredicted RBP16.31■□□□□ 0.2
UPF1-201ENST00000262803 RECKO95980 971 aa16.31■□□□□ 0.2
UPF1-201ENST00000262803 UNC119Q13432 240 aa16.31■□□□□ 0.2
UPF1-201ENST00000262803 C19orf48Q6RUI8 117 aa16.31■□□□□ 0.2
UPF1-201ENST00000262803 RBBP6Q7Z6E9 1792 aaKnown RBP16.31■□□□□ 0.2
UPF1-201ENST00000262803 COTL1Q14019 142 aa16.31■□□□□ 0.2
UPF1-201ENST00000262803 ALKBH7Q9BT30 221 aaPredicted RBP16.31■□□□□ 0.2
UPF1-201ENST00000262803 PAM16Q9Y3D7 125 aa16.31■□□□□ 0.2
UPF1-201ENST00000262803 LGALS3P17931 250 aaKnown RBP16.3■□□□□ 0.2
UPF1-201ENST00000262803 OR4B1Q8NGF8 309 aa16.3■□□□□ 0.2
UPF1-201ENST00000262803 GPR82Q96P67 336 aa16.3■□□□□ 0.2
UPF1-201ENST00000262803 RBFOX2O43251 390 aaKnown RBP eCLIP16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms