RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 HNRNPLLQ8WVV9 542 aaKnown RBP6.47□□□□□ -1.37
SCN1A-216ENST00000637968 HELLSQ9NRZ9 838 aa6.47□□□□□ -1.37
SCN1A-216ENST00000637968 ITGB1BP2Q9UKP3 347 aa6.47□□□□□ -1.37
SCN1A-216ENST00000637968 PSME1Q06323 249 aa6.47□□□□□ -1.37
SCN1A-216ENST00000637968 KIAA0753Q2KHM9 967 aa6.47□□□□□ -1.37
SCN1A-216ENST00000637968 TBC1D25Q3MII6 688 aa6.47□□□□□ -1.37
SCN1A-216ENST00000637968 WLSQ5T9L3 541 aa6.47□□□□□ -1.37
SCN1A-216ENST00000637968 VPS53Q5VIR6 699 aa6.47□□□□□ -1.37
SCN1A-216ENST00000637968 THEMISQ8N1K5 641 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-216ENST00000637968 IGSF22Q8N9C0 903 aa6.47□□□□□ -1.37
SCN1A-216ENST00000637968 MKL1Q969V6 931 aa6.47□□□□□ -1.37
SCN1A-216ENST00000637968 RILPL2Q969X0 211 aa6.47□□□□□ -1.37
SCN1A-216ENST00000637968 GBP5Q96PP8 586 aa6.47□□□□□ -1.37
SCN1A-216ENST00000637968 NPHP3Q7Z494 1330 aa6.47□□□□□ -1.37
SCN1A-216ENST00000637968 CLTAP09496 248 aa6.47□□□□□ -1.37
SCN1A-216ENST00000637968 TROVE2P10155 538 aaKnown RBP eCLIP6.47□□□□□ -1.37
SCN1A-216ENST00000637968 ARID5BQ14865 1188 aa6.47□□□□□ -1.37
SCN1A-216ENST00000637968 TSNAXIP1Q2TAA8 658 aa6.47□□□□□ -1.37
SCN1A-216ENST00000637968 ODF2Q5BJF6 829 aa6.47□□□□□ -1.37
SCN1A-216ENST00000637968 PRPF40BQ6NWY9 871 aaKnown RBP6.47□□□□□ -1.37
SCN1A-216ENST00000637968 CCDC83Q8IWF9 413 aa6.47□□□□□ -1.37
SCN1A-216ENST00000637968 AOPEPQ8N6M6 819 aa6.47□□□□□ -1.37
SCN1A-216ENST00000637968 ANKS4BQ8N8V4 417 aa6.47□□□□□ -1.37
SCN1A-216ENST00000637968 TEKT4Q8WW24 435 aa6.47□□□□□ -1.37
SCN1A-216ENST00000637968 LZICQ8WZA0 190 aa6.47□□□□□ -1.37
SCN1A-216ENST00000637968 UIMC1Q96RL1 719 aa6.47□□□□□ -1.37
SCN1A-216ENST00000637968 CLSTN2Q9H4D0 955 aa6.47□□□□□ -1.37
SCN1A-216ENST00000637968 LMCD1Q9NZU5 365 aa6.47□□□□□ -1.37
SCN1A-216ENST00000637968 LUC7L2Q9Y383 392 aaKnown RBP6.47□□□□□ -1.37
SCN1A-216ENST00000637968 PTPN23Q9H3S7 1636 aa6.47□□□□□ -1.37
SCN1A-216ENST00000637968 STXBP3O00186 592 aa6.46□□□□□ -1.37
SCN1A-216ENST00000637968 CETN3O15182 167 aa6.46□□□□□ -1.37
SCN1A-216ENST00000637968 HNRNPCP07910 306 aaKnown RBP eCLIP6.46□□□□□ -1.37
SCN1A-216ENST00000637968 CTCFP49711 727 aaPredicted RBP6.46□□□□□ -1.37
SCN1A-216ENST00000637968 MAP7Q14244 749 aa6.46□□□□□ -1.37
SCN1A-216ENST00000637968 SLC4A8Q2Y0W8 1093 aa6.46□□□□□ -1.37
SCN1A-216ENST00000637968 TRIM68Q6AZZ1 485 aa6.46□□□□□ -1.37
SCN1A-216ENST00000637968 CYB5D1Q6P9G0 228 aa6.46□□□□□ -1.37
SCN1A-216ENST00000637968 SARM1Q6SZW1 724 aa6.46□□□□□ -1.37
SCN1A-216ENST00000637968 LCA5Q86VQ0 697 aa6.46□□□□□ -1.37
SCN1A-216ENST00000637968 TMEM57Q8N5G2 664 aa6.46□□□□□ -1.37
SCN1A-216ENST00000637968 ATP11CQ8NB49 1132 aa6.46□□□□□ -1.37
SCN1A-216ENST00000637968 TTC14Q96N46 770 aa6.46□□□□□ -1.37
SCN1A-216ENST00000637968 OSBPL1AQ9BXW6 950 aa6.46□□□□□ -1.37
SCN1A-216ENST00000637968 VCPKMTQ9H867 229 aa6.46□□□□□ -1.37
SCN1A-216ENST00000637968 PICK1Q9NRD5 415 aa6.46□□□□□ -1.37
SCN1A-216ENST00000637968 SPATA7Q9P0W8 599 aa6.46□□□□□ -1.37
SCN1A-216ENST00000637968 CORO1CQ9ULV4 474 aaPredicted RBP6.46□□□□□ -1.37
SCN1A-216ENST00000637968 ABCA10Q8WWZ4 1543 aa6.46□□□□□ -1.37
SCN1A-216ENST00000637968 HMGB1P1B2RPK0 211 aaPredicted RBP6.46□□□□□ -1.38
SCN1A-216ENST00000637968 EIF3HO15372 352 aaKnown RBP eCLIP6.46□□□□□ -1.382e-7■■■■□ 19.3
SCN1A-216ENST00000637968 KRT38O76015 456 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 IRAK1P51617 712 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 ATP11AP98196 1134 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 RASA3Q14644 834 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 TAF11Q15544 211 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 TTC22Q5TAA0 569 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 OLFM4Q6UX06 510 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 NANOGNBQ7Z5D8 188 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 TMEM110Q86TL2 294 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 FCHSD1Q86WN1 690 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 SEC62Q99442 399 aaKnown RBP6.46□□□□□ -1.38
SCN1A-216ENST00000637968 PHACTR1Q9C0D0 580 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 NACA2Q9H009 215 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 FAM184BQ9ULE4 1060 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 RPRD2Q5VT52 1461 aaKnown RBP6.46□□□□□ -1.38
SCN1A-216ENST00000637968 ARHGAP6O43182 974 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 N4BP1O75113 896 aaKnown RBP6.46□□□□□ -1.38
SCN1A-216ENST00000637968 MPP3Q13368 585 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 SPECC1LQ69YQ0 1117 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 TEX9Q8N6V9 391 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 RBM41Q96IZ5 413 aaKnown RBP6.46□□□□□ -1.38
SCN1A-216ENST00000637968 ZSCAN31Q96LW9 406 aaPredicted RBP6.46□□□□□ -1.38
SCN1A-216ENST00000637968 IFNKQ9P0W0 207 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 DDX20Q9UHI6 824 aaKnown RBP6.46□□□□□ -1.38
SCN1A-216ENST00000637968 CFAP45Q9UL16 551 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 NOB1Q9ULX3 412 aaKnown RBP6.46□□□□□ -1.38
SCN1A-216ENST00000637968 TNNQ9UQP3 1299 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 DAAM1Q9Y4D1 1078 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 AP5Z1O43299 807 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 MYO1BO43795 1136 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 RAD21O60216 631 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 TMCC1O94876 653 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 NAT1P18440 290 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 PSMC4P43686 418 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 GNAI1P63096 354 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 TRMT2AQ8IZ69 625 aaKnown RBP6.46□□□□□ -1.38
SCN1A-216ENST00000637968 PHC3Q8NDX5 983 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 UBXN6Q9BZV1 441 aa6.46□□□□□ -1.38
SCN1A-216ENST00000637968 MAP2K7O14733 419 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 ATF3P18847 181 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 KCNJ6P48051 423 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 CCZ1BP86790 482 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 CCZ1P86791 482 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-216ENST00000637968 ZBTB17Q13105 803 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 HIBCHQ6NVY1 386 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-216ENST00000637968 SYNE3Q6ZMZ3 975 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 CADPS2Q86UW7 1296 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 MAB21L3Q8N8X9 362 aa6.45□□□□□ -1.38
SCN1A-216ENST00000637968 CCDC63Q8NA47 563 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms