RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-223ENST00000637823 DOK7Q18PE1 504 aa14.09□□□□□ -0.15
CLN6-223ENST00000637823 RNF20Q5VTR2 975 aa14.09□□□□□ -0.15
CLN6-223ENST00000637823 NAA16Q6N069 864 aaPredicted RBP14.09□□□□□ -0.15
CLN6-223ENST00000637823 NSUN4Q96CB9 384 aaKnown RBP14.09□□□□□ -0.15
CLN6-223ENST00000637823 FER1L6Q2WGJ9 1857 aa14.09□□□□□ -0.15
CLN6-223ENST00000637823 ARFGEF1Q9Y6D6 1849 aa14.08□□□□□ -0.15
CLN6-223ENST00000637823 ZKSCAN1P17029 563 aaPredicted RBP14.08□□□□□ -0.16
CLN6-223ENST00000637823 GSTO1P78417 241 aa14.08□□□□□ -0.16
CLN6-223ENST00000637823 MECOMQ03112 1051 aa14.08□□□□□ -0.16
CLN6-223ENST00000637823 KIAA2012Q0VF49 1180 aa14.08□□□□□ -0.16
CLN6-223ENST00000637823 BECN1Q14457 450 aa14.08□□□□□ -0.16
CLN6-223ENST00000637823 CREB3L3Q68CJ9 461 aa14.08□□□□□ -0.16
CLN6-223ENST00000637823 AIDAQ96BJ3 306 aa14.08□□□□□ -0.16
CLN6-223ENST00000637823 STRBPQ96SI9 672 aaKnown RBP14.08□□□□□ -0.16
CLN6-223ENST00000637823 CTNNA3Q9UI47 895 aa14.08□□□□□ -0.16
CLN6-223ENST00000637823 PALD1Q9ULE6 856 aa14.08□□□□□ -0.16
CLN6-223ENST00000637823 SNX14Q9Y5W7 946 aa14.08□□□□□ -0.16
CLN6-223ENST00000637823 PSME4Q14997 1843 aa14.07□□□□□ -0.16
CLN6-223ENST00000637823 MAGEB6P1A0A0J9YX57 407 aa14.07□□□□□ -0.16
CLN6-223ENST00000637823 SLC27A2O14975 620 aa14.07□□□□□ -0.16
CLN6-223ENST00000637823 LDHCP07864 332 aa14.07□□□□□ -0.16
CLN6-223ENST00000637823 GNAT2P19087 354 aa14.07□□□□□ -0.16
CLN6-223ENST00000637823 PRDX5P30044 214 aa14.07□□□□□ -0.16
CLN6-223ENST00000637823 GTF2IP78347 998 aa14.07□□□□□ -0.16
CLN6-223ENST00000637823 TSGA10IPQ3SY00 556 aa14.07□□□□□ -0.16
CLN6-223ENST00000637823 VPS53Q5VIR6 699 aa14.07□□□□□ -0.16
CLN6-223ENST00000637823 TTLL5Q6EMB2 1281 aa14.07□□□□□ -0.16
CLN6-223ENST00000637823 DZIP1Q86YF9 867 aaKnown RBP14.07□□□□□ -0.16
CLN6-223ENST00000637823 KLHL34Q8N239 644 aa14.07□□□□□ -0.16
CLN6-223ENST00000637823 SNX21Q969T3 373 aa14.07□□□□□ -0.16
CLN6-223ENST00000637823 JAG2Q9Y219 1238 aa14.07□□□□□ -0.16
CLN6-223ENST00000637823 SUGT1Q9Y2Z0 365 aa14.07□□□□□ -0.16
CLN6-223ENST00000637823 SCN9AQ15858 1988 aa14.06□□□□□ -0.16
CLN6-223ENST00000637823 PATL2C9JE40 543 aaKnown RBP14.06□□□□□ -0.16
CLN6-223ENST00000637823 MBD4O95243 580 aa14.06□□□□□ -0.16
CLN6-223ENST00000637823 ALX1Q15699 326 aa14.06□□□□□ -0.16
CLN6-223ENST00000637823 MFSD14BQ5SR56 506 aa14.06□□□□□ -0.16
CLN6-223ENST00000637823 RASEFQ8IZ41 740 aa14.06□□□□□ -0.16
CLN6-223ENST00000637823 ZNF384Q8TF68 577 aa14.06□□□□□ -0.16
CLN6-223ENST00000637823 TM6SF1Q9BZW5 370 aa14.06□□□□□ -0.16
CLN6-223ENST00000637823 SRCAPQ6ZRS2 3230 aa14.06□□□□□ -0.16
CLN6-223ENST00000637823 RPAP1Q9BWH6 1393 aaPredicted RBP14.06□□□□□ -0.16
CLN6-223ENST00000637823 FOXP2O15409 715 aa14.05□□□□□ -0.16
CLN6-223ENST00000637823 PPIP5K2O43314 1243 aa14.05□□□□□ -0.16
CLN6-223ENST00000637823 ECE2O60344 883 aa14.05□□□□□ -0.16
CLN6-223ENST00000637823 FKBP1AP62942 108 aaKnown RBP14.05□□□□□ -0.16
CLN6-223ENST00000637823 AOC3Q16853 763 aa14.05□□□□□ -0.16
CLN6-223ENST00000637823 SLF2Q8IX21 1173 aa14.05□□□□□ -0.16
CLN6-223ENST00000637823 ARMT1Q9H993 441 aa14.05□□□□□ -0.16
CLN6-223ENST00000637823 DBNDD1Q9H9R9 158 aa14.05□□□□□ -0.16
CLN6-223ENST00000637823 DAXXQ9UER7 740 aaPredicted RBP14.05□□□□□ -0.16
CLN6-223ENST00000637823 ZNF646O15015 1829 aaPredicted RBP14.05□□□□□ -0.16
CLN6-223ENST00000637823 LAMA4Q16363 1823 aa14.05□□□□□ -0.16
CLN6-223ENST00000637823 FGAP02671 866 aa14.04□□□□□ -0.16
CLN6-223ENST00000637823 APPP05067 770 aa14.04□□□□□ -0.16
CLN6-223ENST00000637823 PSMA5P28066 241 aa14.04□□□□□ -0.16
CLN6-223ENST00000637823 KRT32Q14532 448 aa14.04□□□□□ -0.16
CLN6-223ENST00000637823 STRIP1Q5VSL9 837 aa14.04□□□□□ -0.16
CLN6-223ENST00000637823 ADGRA1Q86SQ6 560 aa14.04□□□□□ -0.16
CLN6-223ENST00000637823 MIGA1Q8NAN2 632 aa14.04□□□□□ -0.16
CLN6-223ENST00000637823 FBXW7Q969H0 707 aa14.04□□□□□ -0.16
CLN6-223ENST00000637823 FAM163AQ96GL9 167 aaPredicted RBP14.04□□□□□ -0.16
CLN6-223ENST00000637823 RIOK1Q9BRS2 568 aaKnown RBP14.04□□□□□ -0.16
CLN6-223ENST00000637823 USP17L3A6NCW0 530 aa14.03□□□□□ -0.16
CLN6-223ENST00000637823 USP17L4A6NCW7 530 aa14.03□□□□□ -0.16
CLN6-223ENST00000637823 GSG1L2A8MUP6 293 aa14.03□□□□□ -0.16
CLN6-223ENST00000637823 ST18O60284 1047 aa14.03□□□□□ -0.16
CLN6-223ENST00000637823 CYP21A2P08686 494 aa14.03□□□□□ -0.16
CLN6-223ENST00000637823 NEK4P51957 841 aa14.03□□□□□ -0.16
CLN6-223ENST00000637823 PPP4CP60510 307 aa14.03□□□□□ -0.16
CLN6-223ENST00000637823 GRIK5Q16478 980 aa14.03□□□□□ -0.16
CLN6-223ENST00000637823 USP17L1Q7RTZ2 530 aa14.03□□□□□ -0.16
CLN6-223ENST00000637823 CERS3Q8IU89 383 aa14.03□□□□□ -0.16
CLN6-223ENST00000637823 LCORLQ8N3X6 602 aa14.03□□□□□ -0.16
CLN6-223ENST00000637823 NOL10Q9BSC4 688 aaKnown RBP14.03□□□□□ -0.16
CLN6-223ENST00000637823 NACAP1Q9BZK3 213 aa14.03□□□□□ -0.16
CLN6-223ENST00000637823 BCS1LQ9Y276 419 aa14.03□□□□□ -0.16
CLN6-223ENST00000637823 SLC4A4Q9Y6R1 1079 aa14.03□□□□□ -0.16
CLN6-223ENST00000637823 ZMYM6O95789 1325 aa14.03□□□□□ -0.16
CLN6-223ENST00000637823 CDK5RAP2Q96SN8 1893 aa14.03□□□□□ -0.16
CLN6-223ENST00000637823 BAZ2AQ9UIF9 1905 aaKnown RBP14.03□□□□□ -0.16
CLN6-223ENST00000637823 BAG3O95817 575 aa14.02□□□□□ -0.17
CLN6-223ENST00000637823 DYNLL1P63167 89 aaKnown RBP14.02□□□□□ -0.17
CLN6-223ENST00000637823 IMMTQ16891 758 aaKnown RBP14.02□□□□□ -0.17
CLN6-223ENST00000637823 HSCBQ8IWL3 235 aa14.02□□□□□ -0.17
CLN6-223ENST00000637823 IFNL3Q8IZI9 196 aa14.02□□□□□ -0.17
CLN6-223ENST00000637823 LARGE2Q8N3Y3 721 aa14.02□□□□□ -0.17
CLN6-223ENST00000637823 NLGN2Q8NFZ4 835 aa14.02□□□□□ -0.17
CLN6-223ENST00000637823 JAKMIP1Q96N16 626 aaKnown RBP14.02□□□□□ -0.17
CLN6-223ENST00000637823 TBC1D2Q9BYX2 928 aa14.02□□□□□ -0.17
CLN6-223ENST00000637823 CRNKL1Q9BZJ0 848 aaKnown RBP14.02□□□□□ -0.17
CLN6-223ENST00000637823 ZSWIM6Q9HCJ5 1215 aa14.02□□□□□ -0.17
CLN6-223ENST00000637823 KCNQ5Q9NR82 932 aa14.02□□□□□ -0.17
CLN6-223ENST00000637823 ZNF277Q9NRM2 450 aaPredicted RBP14.02□□□□□ -0.17
CLN6-223ENST00000637823 CYP46A1Q9Y6A2 500 aa14.02□□□□□ -0.17
CLN6-223ENST00000637823 MROH7-TTC4A0A0A0MT08 1334 aa14.01□□□□□ -0.17
CLN6-223ENST00000637823 LTBP3Q9NS15 1303 aa14.01□□□□□ -0.17
CLN6-223ENST00000637823 ZNF213O14771 459 aa14.01□□□□□ -0.17
CLN6-223ENST00000637823 IARSP41252 1262 aaKnown RBP14.01□□□□□ -0.17
CLN6-223ENST00000637823 MCM2P49736 904 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms