RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 NR1I2O75469 434 aa12.48□□□□□ -0.41
CUX1-221ENST00000622516 UQCRFS1P1P0C7P4 283 aa12.48□□□□□ -0.41
CUX1-221ENST00000622516 UBE3CQ15386 1083 aa12.48□□□□□ -0.41
CUX1-221ENST00000622516 MYL10Q9BUA6 226 aa12.48□□□□□ -0.41
CUX1-221ENST00000622516 SCAND2PQ9GZW5 306 aaPredicted RBP12.48□□□□□ -0.41
CUX1-221ENST00000622516 HPS5Q9UPZ3 1129 aa12.48□□□□□ -0.41
CUX1-221ENST00000622516 WNK3Q9BYP7 1800 aa12.48□□□□□ -0.41
CUX1-221ENST00000622516 SMIM22K7EJ46 135 aa12.48□□□□□ -0.41
CUX1-221ENST00000622516 SLC51AQ86UW1 340 aa12.48□□□□□ -0.41
CUX1-221ENST00000622516 ZNF274Q96GC6 653 aaPredicted RBP12.48□□□□□ -0.41
CUX1-221ENST00000622516 ZNF512BQ96KM6 892 aaPredicted RBP12.48□□□□□ -0.41
CUX1-221ENST00000622516 LLPHQ9BRT6 129 aaKnown RBP12.48□□□□□ -0.41
CUX1-221ENST00000622516 LRP2BPQ9P2M1 347 aa12.48□□□□□ -0.41
CUX1-221ENST00000622516 NRAPQ86VF7 1730 aa12.47□□□□□ -0.41
CUX1-221ENST00000622516 POLR3DP05423 398 aaPredicted RBP12.47□□□□□ -0.41
CUX1-221ENST00000622516 CLCN1P35523 988 aa12.47□□□□□ -0.41
CUX1-221ENST00000622516 ADD1P35611 737 aaKnown RBP12.47□□□□□ -0.41
CUX1-221ENST00000622516 TRDNQ13061 729 aa12.47□□□□□ -0.41
CUX1-221ENST00000622516 CELF1Q92879 486 aaKnown RBP12.47□□□□□ -0.41
CUX1-221ENST00000622516 SMARCC1Q92922 1105 aaPredicted RBP12.47□□□□□ -0.41
CUX1-221ENST00000622516 PDLIM2Q96JY6 352 aa12.47□□□□□ -0.41
CUX1-221ENST00000622516 AIFM3Q96NN9 605 aa12.47□□□□□ -0.41
CUX1-221ENST00000622516 EPB41L4AQ9HCS5 686 aaPredicted RBP12.47□□□□□ -0.41
CUX1-221ENST00000622516 TOMM22Q9NS69 142 aa12.47□□□□□ -0.41
CUX1-221ENST00000622516 SPEF2Q9C093 1822 aa12.47□□□□□ -0.41
CUX1-221ENST00000622516 MAP3K12Q12852 859 aa12.47□□□□□ -0.41
CUX1-221ENST00000622516 RRP12Q5JTH9 1297 aaKnown RBP12.47□□□□□ -0.41
CUX1-221ENST00000622516 LCORLQ8N3X6 602 aa12.47□□□□□ -0.41
CUX1-221ENST00000622516 USP28Q96RU2 1077 aa12.47□□□□□ -0.41
CUX1-221ENST00000622516 ZKSCAN3Q9BRR0 538 aa12.47□□□□□ -0.41
CUX1-221ENST00000622516 ZNF652Q9Y2D9 606 aa12.47□□□□□ -0.41
CUX1-221ENST00000622516 NEDD4P46934 1319 aa12.47□□□□□ -0.41
CUX1-221ENST00000622516 MYH7P12883 1935 aa12.46□□□□□ -0.41
CUX1-221ENST00000622516 UBE2Q2LH0YL09 131 aa12.46□□□□□ -0.41
CUX1-221ENST00000622516 CPLX1O14810 134 aa12.46□□□□□ -0.41
CUX1-221ENST00000622516 ADGRA1Q86SQ6 560 aa12.46□□□□□ -0.41
CUX1-221ENST00000622516 JAG2Q9Y219 1238 aa12.46□□□□□ -0.41
CUX1-221ENST00000622516 TACC3Q9Y6A5 838 aa12.46□□□□□ -0.41
CUX1-221ENST00000622516 CARMIL3Q8ND23 1372 aa12.46□□□□□ -0.41
CUX1-221ENST00000622516 UTRNP46939 3433 aa12.46□□□□□ -0.41
CUX1-221ENST00000622516 GNPATO15228 680 aa12.46□□□□□ -0.42
CUX1-221ENST00000622516 KLRK1P26718 216 aa12.46□□□□□ -0.42
CUX1-221ENST00000622516 HMGN5P82970 282 aaKnown RBP12.46□□□□□ -0.42
CUX1-221ENST00000622516 ILDR1Q86SU0 546 aaPredicted RBP12.46□□□□□ -0.42
CUX1-221ENST00000622516 MICU3Q86XE3 530 aa12.46□□□□□ -0.42
CUX1-221ENST00000622516 IFNL3Q8IZI9 196 aa12.46□□□□□ -0.42
CUX1-221ENST00000622516 AK7Q96M32 723 aa12.46□□□□□ -0.42
CUX1-221ENST00000622516 NAPBQ9H115 298 aa12.46□□□□□ -0.42
CUX1-221ENST00000622516 NUP62CLQ9H1M0 184 aa12.46□□□□□ -0.42
CUX1-221ENST00000622516 BCL2L12Q9HB09 334 aa12.46□□□□□ -0.42
CUX1-221ENST00000622516 ABCC12Q96J65 1359 aa12.45□□□□□ -0.42
CUX1-221ENST00000622516 SALL1Q9NSC2 1324 aa12.45□□□□□ -0.42
CUX1-221ENST00000622516 TICAM2Q86XR7 235 aa12.45□□□□□ -0.42
CUX1-221ENST00000622516 PHKBQ93100 1093 aa12.45□□□□□ -0.42
CUX1-221ENST00000622516 ZNF830Q96NB3 372 aaPredicted RBP12.45□□□□□ -0.42
CUX1-221ENST00000622516 ELP1O95163 1332 aa12.45□□□□□ -0.42
CUX1-221ENST00000622516 A0A087WWV3 80 aa12.45□□□□□ -0.42
CUX1-221ENST00000622516 ANKRD18AQ8IVF6 992 aa12.45□□□□□ -0.42
CUX1-221ENST00000622516 SDR42E1Q8WUS8 393 aa12.45□□□□□ -0.42
CUX1-221ENST00000622516 FUCA2Q9BTY2 467 aa12.45□□□□□ -0.42
CUX1-221ENST00000622516 TNMDQ9H2S6 317 aa12.45□□□□□ -0.42
CUX1-221ENST00000622516 ORC3Q9UBD5 711 aaPredicted RBP12.45□□□□□ -0.42
CUX1-221ENST00000622516 USP21Q9UK80 565 aa12.45□□□□□ -0.42
CUX1-221ENST00000622516 BCL9LQ86UU0 1499 aa12.45□□□□□ -0.42
CUX1-221ENST00000622516 PTMAP06454 111 aaKnown RBP12.45□□□□□ -0.42
CUX1-221ENST00000622516 ZSCAN30Q86W11 494 aa12.45□□□□□ -0.42
CUX1-221ENST00000622516 ERCC4Q92889 916 aaPredicted RBP12.45□□□□□ -0.42
CUX1-221ENST00000622516 ZSCAN16Q9H4T2 348 aaPredicted RBP12.45□□□□□ -0.42
CUX1-221ENST00000622516 SLC4A4Q9Y6R1 1079 aa12.45□□□□□ -0.42
CUX1-221ENST00000622516 GSG1L2A8MUP6 293 aa12.44□□□□□ -0.42
CUX1-221ENST00000622516 PATL2C9JE40 543 aaKnown RBP12.44□□□□□ -0.42
CUX1-221ENST00000622516 MSNP26038 577 aaKnown RBP12.44□□□□□ -0.42
CUX1-221ENST00000622516 TDO2P48775 406 aa12.44□□□□□ -0.42
CUX1-221ENST00000622516 NFXL1Q6ZNB6 911 aa12.44□□□□□ -0.42
CUX1-221ENST00000622516 CCDC82Q8N4S0 544 aa12.44□□□□□ -0.42
CUX1-221ENST00000622516 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.44□□□□□ -0.42
CUX1-221ENST00000622516 RAI14Q9P0K7 980 aa12.44□□□□□ -0.42
CUX1-221ENST00000622516 ZSWIM5Q9P217 1185 aa12.44□□□□□ -0.42
CUX1-221ENST00000622516 AP5Z1O43299 807 aa12.44□□□□□ -0.42
CUX1-221ENST00000622516 LETM1O95202 739 aaPredicted RBP12.44□□□□□ -0.42
CUX1-221ENST00000622516 CDC27P30260 824 aa12.44□□□□□ -0.42
CUX1-221ENST00000622516 NAA16Q6N069 864 aaPredicted RBP12.44□□□□□ -0.42
CUX1-221ENST00000622516 VPS37DQ86XT2 251 aa12.44□□□□□ -0.42
CUX1-221ENST00000622516 C8orf76Q96K31 380 aa12.44□□□□□ -0.42
CUX1-221ENST00000622516 CDC5LQ99459 802 aaKnown RBP12.44□□□□□ -0.42
CUX1-221ENST00000622516 CFAP45Q9UL16 551 aa12.44□□□□□ -0.42
CUX1-221ENST00000622516 ANGEL1Q9UNK9 670 aaKnown RBP12.44□□□□□ -0.42
CUX1-221ENST00000622516 ADCY5O95622 1261 aa12.43□□□□□ -0.42
CUX1-221ENST00000622516 EVCP57679 992 aa12.43□□□□□ -0.42
CUX1-221ENST00000622516 VPS72Q15906 364 aa12.43□□□□□ -0.42
CUX1-221ENST00000622516 MAP3K11Q16584 847 aa12.43□□□□□ -0.42
CUX1-221ENST00000622516 TFCP2L1Q9NZI6 479 aa12.43□□□□□ -0.42
CUX1-221ENST00000622516 MINPP1Q9UNW1 487 aa12.43□□□□□ -0.42
CUX1-221ENST00000622516 DDX60Q8IY21 1712 aaKnown RBP12.43□□□□□ -0.42
CUX1-221ENST00000622516 MINDY4BA8MYZ0 360 aa12.43□□□□□ -0.42
CUX1-221ENST00000622516 NPHP1O15259 732 aa12.43□□□□□ -0.42
CUX1-221ENST00000622516 CYP7A1P22680 504 aa12.43□□□□□ -0.42
CUX1-221ENST00000622516 NBPF5PQ86XG9 351 aaPredicted RBP12.43□□□□□ -0.42
CUX1-221ENST00000622516 CMTR1Q8N1G2 835 aaKnown RBP12.43□□□□□ -0.42
CUX1-221ENST00000622516 FBXW7Q969H0 707 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms