RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 SLIT2O94813 1529 aa18.45■□□□□ 0.54
CPSF1-213ENST00000620219 ADD2P35612 726 aa18.45■□□□□ 0.54
CPSF1-213ENST00000620219 ABCC6O95255 1503 aa18.45■□□□□ 0.54
CPSF1-213ENST00000620219 GOLGA8AA7E2F4 631 aa18.45■□□□□ 0.54
CPSF1-213ENST00000620219 H0YIN7 160 aa18.45■□□□□ 0.54
CPSF1-213ENST00000620219 SYT1P21579 422 aa18.45■□□□□ 0.54
CPSF1-213ENST00000620219 GTF2IP78347 998 aa18.45■□□□□ 0.54
CPSF1-213ENST00000620219 MYL10Q9BUA6 226 aa18.45■□□□□ 0.54
CPSF1-213ENST00000620219 ZSWIM6Q9HCJ5 1215 aa18.45■□□□□ 0.54
CPSF1-213ENST00000620219 TSPY2A6NKD2 308 aa18.44■□□□□ 0.54
CPSF1-213ENST00000620219 RNF41Q9H4P4 317 aaPredicted RBP18.44■□□□□ 0.54
CPSF1-213ENST00000620219 SAP30BPQ9UHR5 308 aaKnown RBP18.44■□□□□ 0.54
CPSF1-213ENST00000620219 LDHCP07864 332 aa18.44■□□□□ 0.54
CPSF1-213ENST00000620219 DYNLL1P63167 89 aaKnown RBP18.44■□□□□ 0.54
CPSF1-213ENST00000620219 CNPY2Q9Y2B0 182 aa18.44■□□□□ 0.54
CPSF1-213ENST00000620219 A0A0G2JLW4 131 aa18.44■□□□□ 0.54
CPSF1-213ENST00000620219 COL9A3Q14050 684 aaPredicted RBP18.44■□□□□ 0.54
CPSF1-213ENST00000620219 IQCA1Q86XH1 822 aa18.44■□□□□ 0.54
CPSF1-213ENST00000620219 CARMIL3Q8ND23 1372 aa18.44■□□□□ 0.54
CPSF1-213ENST00000620219 JAK2O60674 1132 aa18.43■□□□□ 0.54
CPSF1-213ENST00000620219 GRAPQ13588 217 aa18.43■□□□□ 0.54
CPSF1-213ENST00000620219 SAFBQ15424 915 aaKnown RBP eCLIP18.43■□□□□ 0.54
CPSF1-213ENST00000620219 C2CD5Q86YS7 1000 aa18.43■□□□□ 0.54
CPSF1-213ENST00000620219 GRAPLQ8TC17 118 aaPredicted RBP18.43■□□□□ 0.54
CPSF1-213ENST00000620219 ORC3Q9UBD5 711 aaPredicted RBP18.43■□□□□ 0.54
CPSF1-213ENST00000620219 METAP2P50579 478 aaKnown RBP eCLIP18.43■□□□□ 0.549e-7■■■□□ 15.9
CPSF1-213ENST00000620219 PANK2Q9BZ23 570 aa18.43■□□□□ 0.54
CPSF1-213ENST00000620219 C5P01031 1676 aa18.43■□□□□ 0.54
CPSF1-213ENST00000620219 KRT85P78386 507 aa18.43■□□□□ 0.54
CPSF1-213ENST00000620219 MPNDQ8N594 471 aa18.43■□□□□ 0.54
CPSF1-213ENST00000620219 AHDC1Q5TGY3 1603 aaPredicted RBP18.43■□□□□ 0.54
CPSF1-213ENST00000620219 DEFB132Q7Z7B7 95 aa18.43■□□□□ 0.54
CPSF1-213ENST00000620219 TRIM22Q8IYM9 498 aa18.43■□□□□ 0.54
CPSF1-213ENST00000620219 ADRA2BP18089 450 aa18.42■□□□□ 0.54
CPSF1-213ENST00000620219 IFNL3Q8IZI9 196 aa18.42■□□□□ 0.54
CPSF1-213ENST00000620219 LCORLQ8N3X6 602 aa18.42■□□□□ 0.54
CPSF1-213ENST00000620219 GPHNQ9NQX3 736 aaPredicted RBP18.42■□□□□ 0.54
CPSF1-213ENST00000620219 SYCE3A1L190 88 aa18.42■□□□□ 0.54
CPSF1-213ENST00000620219 KLRK1P26718 216 aa18.42■□□□□ 0.54
CPSF1-213ENST00000620219 MFSD14BQ5SR56 506 aa18.42■□□□□ 0.54
CPSF1-213ENST00000620219 ZNF444Q8N0Y2 327 aaPredicted RBP18.42■□□□□ 0.54
CPSF1-213ENST00000620219 INCENPQ9NQS7 918 aa18.42■□□□□ 0.54
CPSF1-213ENST00000620219 STX8Q9UNK0 236 aa18.42■□□□□ 0.54
CPSF1-213ENST00000620219 GYS1P13807 737 aa18.42■□□□□ 0.54
CPSF1-213ENST00000620219 SF3B3Q15393 1217 aaKnown RBP18.42■□□□□ 0.54
CPSF1-213ENST00000620219 MPHOSPH10O00566 681 aaKnown RBP18.41■□□□□ 0.54
CPSF1-213ENST00000620219 WTAPQ15007 396 aa18.41■□□□□ 0.54
CPSF1-213ENST00000620219 C8orf76Q96K31 380 aa18.41■□□□□ 0.54
CPSF1-213ENST00000620219 TM6SF1Q9BZW5 370 aa18.41■□□□□ 0.54
CPSF1-213ENST00000620219 ZSCAN22P10073 491 aaPredicted RBP18.41■□□□□ 0.54
CPSF1-213ENST00000620219 PRDX5P30044 214 aa18.41■□□□□ 0.54
CPSF1-213ENST00000620219 UBE3CQ15386 1083 aa18.41■□□□□ 0.54
CPSF1-213ENST00000620219 BCL2L12Q9HB09 334 aa18.41■□□□□ 0.54
CPSF1-213ENST00000620219 XDHP47989 1333 aa18.41■□□□□ 0.54
CPSF1-213ENST00000620219 KCPQ6ZWJ8 1503 aa18.41■□□□□ 0.54
CPSF1-213ENST00000620219 FLAD1Q8NFF5 587 aa18.41■□□□□ 0.54
CPSF1-213ENST00000620219 ZNF609O15014 1411 aa18.41■□□□□ 0.54
CPSF1-213ENST00000620219 DIXDC1Q155Q3 683 aa18.41■□□□□ 0.54
CPSF1-213ENST00000620219 ZBTB43O43298 467 aa18.4■□□□□ 0.54
CPSF1-213ENST00000620219 GNAT2P19087 354 aa18.4■□□□□ 0.54
CPSF1-213ENST00000620219 EZH2Q15910 746 aaKnown RBP18.4■□□□□ 0.54
CPSF1-213ENST00000620219 AMIGO3Q86WK7 504 aa18.4■□□□□ 0.54
CPSF1-213ENST00000620219 INTS4Q96HW7 963 aaKnown RBP18.4■□□□□ 0.54
CPSF1-213ENST00000620219 FAM84BQ96KN1 310 aaPredicted RBP18.4■□□□□ 0.54
CPSF1-213ENST00000620219 SPATA32Q96LK8 384 aa18.4■□□□□ 0.54
CPSF1-213ENST00000620219 ABCC12Q96J65 1359 aa18.4■□□□□ 0.54
CPSF1-213ENST00000620219 USP17L12C9JPN9 530 aa18.4■□□□□ 0.54
CPSF1-213ENST00000620219 USP17L21D6R901 530 aa18.4■□□□□ 0.54
CPSF1-213ENST00000620219 DNM1Q05193 864 aaKnown RBP18.4■□□□□ 0.54
CPSF1-213ENST00000620219 PATL2C9JE40 543 aaKnown RBP18.4■□□□□ 0.54
CPSF1-213ENST00000620219 PDE6BP35913 854 aa18.4■□□□□ 0.54
CPSF1-213ENST00000620219 ESR2Q92731 530 aa18.4■□□□□ 0.54
CPSF1-213ENST00000620219 SLC26A6Q9BXS9 759 aa18.4■□□□□ 0.54
CPSF1-213ENST00000620219 NHSL1Q5SYE7 1610 aa18.4■□□□□ 0.54
CPSF1-213ENST00000620219 CYP2D7A0A087X1C5 515 aa18.39■□□□□ 0.54
CPSF1-213ENST00000620219 MAPKAPK5Q8IW41 473 aa18.39■□□□□ 0.54
CPSF1-213ENST00000620219 WDR66Q8TBY9 1149 aa18.39■□□□□ 0.54
CPSF1-213ENST00000620219 PTPDC1A2A3K4 754 aa18.39■□□□□ 0.53
CPSF1-213ENST00000620219 PPEF1O14829 653 aaPredicted RBP18.39■□□□□ 0.53
CPSF1-213ENST00000620219 OTUD7BQ6GQQ9 843 aa18.39■□□□□ 0.53
CPSF1-213ENST00000620219 EPB41L2O43491 1005 aaKnown RBP18.39■□□□□ 0.53
CPSF1-213ENST00000620219 ME1P48163 572 aa18.39■□□□□ 0.53
CPSF1-213ENST00000620219 IKQ13123 557 aaPredicted RBP18.39■□□□□ 0.53
CPSF1-213ENST00000620219 STK38Q15208 465 aa18.39■□□□□ 0.53
CPSF1-213ENST00000620219 KRT23Q9C075 422 aa18.39■□□□□ 0.53
CPSF1-213ENST00000620219 ZDHHC9Q9Y397 364 aa18.39■□□□□ 0.53
CPSF1-213ENST00000620219 SCNN1DP51172 638 aa18.38■□□□□ 0.53
CPSF1-213ENST00000620219 GSTO1P78417 241 aa18.38■□□□□ 0.53
CPSF1-213ENST00000620219 PDE4BQ07343 736 aa18.38■□□□□ 0.53
CPSF1-213ENST00000620219 RASSF8Q8NHQ8 419 aa18.38■□□□□ 0.53
CPSF1-213ENST00000620219 TGFBRAP1Q8WUH2 860 aa18.38■□□□□ 0.53
CPSF1-213ENST00000620219 ATF5Q9Y2D1 282 aaPredicted RBP18.38■□□□□ 0.53
CPSF1-213ENST00000620219 COL23A1Q86Y22 540 aaPredicted RBP18.38■□□□□ 0.53
CPSF1-213ENST00000620219 CRACR2BQ8N4Y2 399 aaPredicted RBP18.38■□□□□ 0.53
CPSF1-213ENST00000620219 GRPEL1Q9HAV7 217 aa18.38■□□□□ 0.53
CPSF1-213ENST00000620219 ALDH1B1P30837 517 aa18.38■□□□□ 0.53
CPSF1-213ENST00000620219 IARSP41252 1262 aaKnown RBP18.38■□□□□ 0.53
CPSF1-213ENST00000620219 USP48Q86UV5 1035 aa18.38■□□□□ 0.53
CPSF1-213ENST00000620219 CDKL5O76039 1030 aa18.37■□□□□ 0.53
CPSF1-213ENST00000620219 HMGN5P82970 282 aaKnown RBP18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 147 ms