RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 TEKT1Q969V4 418 aa14.9□□□□□ -0.02
UPF3B-204ENST00000619445 API5Q9BZZ5 524 aaKnown RBP14.9□□□□□ -0.02
UPF3B-204ENST00000619445 TMOD2Q9NZR1 351 aa14.9□□□□□ -0.02
UPF3B-204ENST00000619445 ZNF70Q9UC06 446 aaPredicted RBP14.9□□□□□ -0.02
UPF3B-204ENST00000619445 JAG2Q9Y219 1238 aa14.9□□□□□ -0.02
UPF3B-204ENST00000619445 EYA2O00167 538 aa14.89□□□□□ -0.03
UPF3B-204ENST00000619445 FKTNO75072 461 aa14.89□□□□□ -0.03
UPF3B-204ENST00000619445 TBC1D8O95759 1140 aa14.89□□□□□ -0.03
UPF3B-204ENST00000619445 UBTFL1P0CB47 393 aaPredicted RBP14.89□□□□□ -0.03
UPF3B-204ENST00000619445 SLC5A1P13866 664 aa14.89□□□□□ -0.03
UPF3B-204ENST00000619445 CRKP46108 304 aa14.89□□□□□ -0.03
UPF3B-204ENST00000619445 LRRC24Q50LG9 513 aa14.89□□□□□ -0.03
UPF3B-204ENST00000619445 NBPF12Q5TAG4 269 aaPredicted RBP14.89□□□□□ -0.03
UPF3B-204ENST00000619445 FKBP1CQ5VVH2 108 aa14.89□□□□□ -0.03
UPF3B-204ENST00000619445 TRMT2AQ8IZ69 625 aaKnown RBP14.89□□□□□ -0.03
UPF3B-204ENST00000619445 WNK4Q96J92 1243 aa14.89□□□□□ -0.03
UPF3B-204ENST00000619445 SSC5DA1L4H1 1573 aa14.89□□□□□ -0.03
UPF3B-204ENST00000619445 MKRN3Q13064 507 aaKnown RBP14.88□□□□□ -0.03
UPF3B-204ENST00000619445 WDR66Q8TBY9 1149 aa14.88□□□□□ -0.03
UPF3B-204ENST00000619445 LPIN2Q92539 896 aa14.88□□□□□ -0.03
UPF3B-204ENST00000619445 MYH13Q9UKX3 1938 aa14.88□□□□□ -0.03
UPF3B-204ENST00000619445 CIAO1O76071 339 aa14.87□□□□□ -0.03
UPF3B-204ENST00000619445 CHAF1AQ13111 956 aaPredicted RBP14.87□□□□□ -0.03
UPF3B-204ENST00000619445 IFNL1Q8IU54 200 aa14.87□□□□□ -0.03
UPF3B-204ENST00000619445 ZDHHC15Q96MV8 337 aa14.87□□□□□ -0.03
UPF3B-204ENST00000619445 TDRD3Q9H7E2 651 aaKnown RBP14.87□□□□□ -0.03
UPF3B-204ENST00000619445 GNL3LQ9NVN8 582 aaKnown RBP14.87□□□□□ -0.03
UPF3B-204ENST00000619445 PCDHAC2Q9Y5I4 1007 aa14.87□□□□□ -0.03
UPF3B-204ENST00000619445 USP2O75604 605 aaPredicted RBP14.86□□□□□ -0.03
UPF3B-204ENST00000619445 FGFR2P21802 821 aa14.86□□□□□ -0.03
UPF3B-204ENST00000619445 FBXO46Q6PJ61 603 aaPredicted RBP14.86□□□□□ -0.03
UPF3B-204ENST00000619445 HHIPL2Q6UWX4 724 aa14.86□□□□□ -0.03
UPF3B-204ENST00000619445 FAM83AQ86UY5 434 aa14.86□□□□□ -0.03
UPF3B-204ENST00000619445 WDHD1O75717 1129 aaPredicted RBP14.85□□□□□ -0.03
UPF3B-204ENST00000619445 BCAMP50895 628 aa14.85□□□□□ -0.03
UPF3B-204ENST00000619445 ARHGAP45Q92619 1136 aa14.85□□□□□ -0.03
UPF3B-204ENST00000619445 CLMNQ96JQ2 1002 aa14.85□□□□□ -0.03
UPF3B-204ENST00000619445 CEP126Q9P2H0 1117 aa14.85□□□□□ -0.03
UPF3B-204ENST00000619445 IQSEC3Q9UPP2 1182 aaPredicted RBP14.85□□□□□ -0.03
UPF3B-204ENST00000619445 HPS5Q9UPZ3 1129 aa14.85□□□□□ -0.03
UPF3B-204ENST00000619445 CSADQ9Y600 493 aa14.85□□□□□ -0.03
UPF3B-204ENST00000619445 TCP10L2B9ZVM9 353 aa14.85□□□□□ -0.03
UPF3B-204ENST00000619445 SEMA3EO15041 775 aa14.85□□□□□ -0.03
UPF3B-204ENST00000619445 ZBTB22O15209 634 aa14.85□□□□□ -0.03
UPF3B-204ENST00000619445 IL15P40933 162 aaPredicted RBP14.85□□□□□ -0.03
UPF3B-204ENST00000619445 RFX5P48382 616 aaPredicted RBP14.85□□□□□ -0.03
UPF3B-204ENST00000619445 MAP3K9P80192 1104 aa14.85□□□□□ -0.03
UPF3B-204ENST00000619445 KLHDC4Q8TBB5 520 aa14.85□□□□□ -0.03
UPF3B-204ENST00000619445 CDCA7LQ96GN5 454 aa14.85□□□□□ -0.03
UPF3B-204ENST00000619445 TEPSINQ96N21 525 aa14.85□□□□□ -0.03
UPF3B-204ENST00000619445 RPAP1Q9BWH6 1393 aaPredicted RBP14.84□□□□□ -0.03
UPF3B-204ENST00000619445 TESPA1A2RU30 521 aaPredicted RBP14.84□□□□□ -0.03
UPF3B-204ENST00000619445 IPO8O15397 1037 aaKnown RBP14.84□□□□□ -0.03
UPF3B-204ENST00000619445 GNAI3P08754 354 aa14.84□□□□□ -0.03
UPF3B-204ENST00000619445 ARHGEF6Q15052 776 aa14.84□□□□□ -0.03
UPF3B-204ENST00000619445 DCAF15Q66K64 600 aa14.84□□□□□ -0.03
UPF3B-204ENST00000619445 ERO1AQ96HE7 468 aa14.84□□□□□ -0.03
UPF3B-204ENST00000619445 NOB1Q9ULX3 412 aaKnown RBP14.84□□□□□ -0.03
UPF3B-204ENST00000619445 FZD1Q9UP38 647 aa14.84□□□□□ -0.03
UPF3B-204ENST00000619445 OTOFQ9HC10 1997 aa14.83□□□□□ -0.03
UPF3B-204ENST00000619445 AOX1Q06278 1338 aa14.83□□□□□ -0.04
UPF3B-204ENST00000619445 GTF2A2P52657 109 aa14.83□□□□□ -0.04
UPF3B-204ENST00000619445 ATP2B3Q16720 1220 aa14.83□□□□□ -0.04
UPF3B-204ENST00000619445 ZGPATQ8N5A5 531 aaKnown RBP14.83□□□□□ -0.04
UPF3B-204ENST00000619445 OPTNQ96CV9 577 aa14.83□□□□□ -0.04
UPF3B-204ENST00000619445 TMEM39BQ9GZU3 492 aa14.83□□□□□ -0.04
UPF3B-204ENST00000619445 IGF2BP3O00425 579 aaKnown RBP eCLIP14.82□□□□□ -0.04
UPF3B-204ENST00000619445 APOBEC3HQ6NTF7 200 aaKnown RBP14.82□□□□□ -0.04
UPF3B-204ENST00000619445 ATG9AQ7Z3C6 839 aa14.82□□□□□ -0.04
UPF3B-204ENST00000619445 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.82□□□□□ -0.04
UPF3B-204ENST00000619445 ELP3Q9H9T3 547 aa14.82□□□□□ -0.04
UPF3B-204ENST00000619445 ZCCHC17Q9NP64 241 aaKnown RBP14.82□□□□□ -0.04
UPF3B-204ENST00000619445 COPRSQ9NQ92 184 aa14.82□□□□□ -0.04
UPF3B-204ENST00000619445 DENND2AQ9ULE3 1009 aa14.82□□□□□ -0.04
UPF3B-204ENST00000619445 SALL1Q9NSC2 1324 aa14.81□□□□□ -0.04
UPF3B-204ENST00000619445 RARSP54136 660 aaKnown RBP14.81□□□□□ -0.04
UPF3B-204ENST00000619445 VGLL4Q14135 290 aa14.81□□□□□ -0.04
UPF3B-204ENST00000619445 INTS3Q68E01 1043 aaKnown RBP14.81□□□□□ -0.04
UPF3B-204ENST00000619445 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.81□□□□□ -0.04
UPF3B-204ENST00000619445 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.81□□□□□ -0.04
UPF3B-204ENST00000619445 LDHBP07195 334 aaKnown RBP14.8□□□□□ -0.04
UPF3B-204ENST00000619445 SOX10P56693 466 aa14.8□□□□□ -0.04
UPF3B-204ENST00000619445 GRIK5Q16478 980 aa14.8□□□□□ -0.04
UPF3B-204ENST00000619445 ERO1BQ86YB8 467 aa14.8□□□□□ -0.04
UPF3B-204ENST00000619445 SLF2Q8IX21 1173 aa14.8□□□□□ -0.04
UPF3B-204ENST00000619445 SIL1Q9H173 461 aa14.8□□□□□ -0.04
UPF3B-204ENST00000619445 AKAP2Q9Y2D5 859 aa14.8□□□□□ -0.04
UPF3B-204ENST00000619445 LRRFIP2Q9Y608 721 aaKnown RBP14.8□□□□□ -0.04
UPF3B-204ENST00000619445 PDS5AQ29RF7 1337 aaKnown RBP14.79□□□□□ -0.04
UPF3B-204ENST00000619445 SPDYE5A6NIY4 337 aa14.79□□□□□ -0.04
UPF3B-204ENST00000619445 CETPP11597 493 aa14.79□□□□□ -0.04
UPF3B-204ENST00000619445 GJA5P36382 358 aa14.79□□□□□ -0.04
UPF3B-204ENST00000619445 SP3Q02447 781 aa14.79□□□□□ -0.04
UPF3B-204ENST00000619445 CRHR2Q13324 411 aa14.79□□□□□ -0.04
UPF3B-204ENST00000619445 FAM151AQ8WW52 585 aa14.79□□□□□ -0.04
UPF3B-204ENST00000619445 MS4A4AQ96JQ5 239 aa14.79□□□□□ -0.04
UPF3B-204ENST00000619445 R3HDMLQ9H3Y0 253 aa14.79□□□□□ -0.04
UPF3B-204ENST00000619445 ZFYVE28Q9HCC9 887 aa14.79□□□□□ -0.04
UPF3B-204ENST00000619445 TRIM17Q9Y577 477 aa14.79□□□□□ -0.04
UPF3B-204ENST00000619445 AK9Q5TCS8 1911 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms