RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 GPRC5DQ9NZD1 345 aa24.01■■□□□ 1.43
UPF3A-211ENST00000618700 PRDX5P30044 214 aa24■■□□□ 1.43
UPF3A-211ENST00000618700 DNAJC2Q99543 621 aaKnown RBP24■■□□□ 1.43
UPF3A-211ENST00000618700 ANTXR1Q9H6X2 564 aa24■■□□□ 1.43
UPF3A-211ENST00000618700 MAST2Q6P0Q8 1798 aa23.99■■□□□ 1.43
UPF3A-211ENST00000618700 SCN4AP35499 1836 aa23.99■■□□□ 1.43
UPF3A-211ENST00000618700 ZNF280AP59817 542 aaPredicted RBP23.99■■□□□ 1.43
UPF3A-211ENST00000618700 TBC1D9Q6ZT07 1266 aa23.99■■□□□ 1.43
UPF3A-211ENST00000618700 KIAA0825Q8IV33 1275 aa23.99■■□□□ 1.43
UPF3A-211ENST00000618700 PIH1D3Q9NQM4 214 aaKnown RBP23.99■■□□□ 1.43
UPF3A-211ENST00000618700 ABCF2Q9UG63 623 aa23.99■■□□□ 1.43
UPF3A-211ENST00000618700 GTF3C3Q9Y5Q9 886 aa23.99■■□□□ 1.43
UPF3A-211ENST00000618700 POTECB2RU33 542 aa23.98■■□□□ 1.43
UPF3A-211ENST00000618700 GOLIM4O00461 696 aa23.98■■□□□ 1.43
UPF3A-211ENST00000618700 PITPNM1O00562 1244 aa23.98■■□□□ 1.43
UPF3A-211ENST00000618700 LDHBP07195 334 aaKnown RBP23.98■■□□□ 1.43
UPF3A-211ENST00000618700 USP17L8P0C7I0 530 aa23.98■■□□□ 1.43
UPF3A-211ENST00000618700 MICALL2Q8IY33 904 aa23.98■■□□□ 1.43
UPF3A-211ENST00000618700 EDC3Q96F86 508 aaKnown RBP23.98■■□□□ 1.43
UPF3A-211ENST00000618700 PAG1Q9NWQ8 432 aa23.98■■□□□ 1.43
UPF3A-211ENST00000618700 SHTN1A0MZ66 631 aa23.97■■□□□ 1.43
UPF3A-211ENST00000618700 MAST3O60307 1309 aa23.97■■□□□ 1.43
UPF3A-211ENST00000618700 MMP14P50281 582 aa23.97■■□□□ 1.43
UPF3A-211ENST00000618700 TTF1Q15361 905 aaPredicted RBP23.97■■□□□ 1.43
UPF3A-211ENST00000618700 SPTY2D1Q68D10 685 aaPredicted RBP23.97■■□□□ 1.43
UPF3A-211ENST00000618700 SKAP1Q86WV1 359 aa23.97■■□□□ 1.43
UPF3A-211ENST00000618700 CNOT7Q9UIV1 285 aaKnown RBP23.97■■□□□ 1.43
UPF3A-211ENST00000618700 MYO5AQ9Y4I1 1855 aaKnown RBP23.97■■□□□ 1.43
UPF3A-211ENST00000618700 IGSF3O75054 1194 aa23.96■■□□□ 1.43
UPF3A-211ENST00000618700 LMOD1P29536 600 aaPredicted RBP23.96■■□□□ 1.43
UPF3A-211ENST00000618700 EPS15P42566 896 aa23.96■■□□□ 1.43
UPF3A-211ENST00000618700 TTF2Q9UNY4 1162 aaKnown RBP23.96■■□□□ 1.43
UPF3A-211ENST00000618700 IQCA1LA6NCM1 817 aa23.95■■□□□ 1.42
UPF3A-211ENST00000618700 F8W031 263 aaPredicted RBP23.95■■□□□ 1.42
UPF3A-211ENST00000618700 ERICH6Q7L0X2 663 aa23.95■■□□□ 1.42
UPF3A-211ENST00000618700 ZNF384Q8TF68 577 aa23.95■■□□□ 1.42
UPF3A-211ENST00000618700 HACL1Q9UJ83 578 aa23.95■■□□□ 1.42
UPF3A-211ENST00000618700 HDAC9Q9UKV0 1011 aa23.95■■□□□ 1.42
UPF3A-211ENST00000618700 ADAMTSL1Q8N6G6 1762 aa23.95■■□□□ 1.42
UPF3A-211ENST00000618700 HDLBPQ00341 1268 aaKnown RBP23.94■■□□□ 1.42
UPF3A-211ENST00000618700 OGFOD1Q8N543 542 aa23.94■■□□□ 1.42
UPF3A-211ENST00000618700 LRP2BPQ9P2M1 347 aa23.94■■□□□ 1.42
UPF3A-211ENST00000618700 SERPINA10Q9UK55 444 aa23.94■■□□□ 1.42
UPF3A-211ENST00000618700 KIF3CO14782 793 aa23.93■■□□□ 1.42
UPF3A-211ENST00000618700 MECOMQ03112 1051 aa23.93■■□□□ 1.42
UPF3A-211ENST00000618700 DZIP1Q86YF9 867 aaKnown RBP23.93■■□□□ 1.42
UPF3A-211ENST00000618700 NSUN4Q96CB9 384 aaKnown RBP23.93■■□□□ 1.42
UPF3A-211ENST00000618700 MRIQ9BWK5 157 aa23.93■■□□□ 1.42
UPF3A-211ENST00000618700 NMRK2Q9NPI5 230 aa23.93■■□□□ 1.42
UPF3A-211ENST00000618700 ADARB2Q9NS39 739 aaKnown RBP23.93■■□□□ 1.42
UPF3A-211ENST00000618700 RAI14Q9P0K7 980 aa23.93■■□□□ 1.42
UPF3A-211ENST00000618700 H7C1D1 291 aa23.92■■□□□ 1.42
UPF3A-211ENST00000618700 IDH1O75874 414 aaKnown RBP23.92■■□□□ 1.42
UPF3A-211ENST00000618700 MAP4K4O95819 1239 aaPredicted RBP23.92■■□□□ 1.42
UPF3A-211ENST00000618700 EGFRP00533 1210 aa23.92■■□□□ 1.42
UPF3A-211ENST00000618700 GSPT1P15170 499 aaKnown RBP23.92■■□□□ 1.42
UPF3A-211ENST00000618700 TTC22Q5TAA0 569 aa23.92■■□□□ 1.42
UPF3A-211ENST00000618700 KBTBD3Q8NAB2 608 aa23.92■■□□□ 1.42
UPF3A-211ENST00000618700 MTMR14Q8NCE2 650 aa23.92■■□□□ 1.42
UPF3A-211ENST00000618700 TAF1DQ9H5J8 278 aaPredicted RBP23.92■■□□□ 1.42
UPF3A-211ENST00000618700 MYOZ2Q9NPC6 264 aa23.92■■□□□ 1.42
UPF3A-211ENST00000618700 VEGFAP15692 232 aaPredicted RBP23.91■■□□□ 1.42
UPF3A-211ENST00000618700 EPHX2P34913 555 aa23.91■■□□□ 1.42
UPF3A-211ENST00000618700 CRKP46108 304 aa23.91■■□□□ 1.42
UPF3A-211ENST00000618700 DIXDC1Q155Q3 683 aa23.91■■□□□ 1.42
UPF3A-211ENST00000618700 CHRDL2Q6WN34 429 aa23.91■■□□□ 1.42
UPF3A-211ENST00000618700 SPDYE1Q8NFV5 336 aaPredicted RBP23.91■■□□□ 1.42
UPF3A-211ENST00000618700 TRPM4Q8TD43 1214 aa23.91■■□□□ 1.42
UPF3A-211ENST00000618700 ZBED3Q96IU2 234 aaPredicted RBP23.91■■□□□ 1.42
UPF3A-211ENST00000618700 RRAGCQ9HB90 399 aa23.91■■□□□ 1.42
UPF3A-211ENST00000618700 GAKO14976 1311 aa23.9■■□□□ 1.42
UPF3A-211ENST00000618700 MAP3K12Q12852 859 aa23.9■■□□□ 1.42
UPF3A-211ENST00000618700 CFAP100Q494V2 611 aa23.9■■□□□ 1.42
UPF3A-211ENST00000618700 TMED8Q6PL24 325 aaPredicted RBP23.9■■□□□ 1.42
UPF3A-211ENST00000618700 HHIPL2Q6UWX4 724 aa23.9■■□□□ 1.42
UPF3A-211ENST00000618700 SAMD7Q7Z3H4 446 aa23.9■■□□□ 1.42
UPF3A-211ENST00000618700 TEKT1Q969V4 418 aa23.9■■□□□ 1.42
UPF3A-211ENST00000618700 FAM163AQ96GL9 167 aaPredicted RBP23.9■■□□□ 1.42
UPF3A-211ENST00000618700 MYH7P12883 1935 aa23.9■■□□□ 1.42
UPF3A-211ENST00000618700 MYH2Q9UKX2 1941 aa23.89■■□□□ 1.42
UPF3A-211ENST00000618700 RGS3P49796 1198 aa23.89■■□□□ 1.41
UPF3A-211ENST00000618700 C1QTNF8P60827 252 aa23.89■■□□□ 1.41
UPF3A-211ENST00000618700 KIF4BQ2VIQ3 1234 aa23.89■■□□□ 1.41
UPF3A-211ENST00000618700 TBC1D10BQ4KMP7 808 aaPredicted RBP23.89■■□□□ 1.41
UPF3A-211ENST00000618700 EVI5LQ96CN4 794 aa23.89■■□□□ 1.41
UPF3A-211ENST00000618700 ZDHHC15Q96MV8 337 aa23.89■■□□□ 1.41
UPF3A-211ENST00000618700 MROH7-TTC4A0A0A0MT08 1334 aa23.88■■□□□ 1.41
UPF3A-211ENST00000618700 PDE6AP16499 860 aa23.88■■□□□ 1.41
UPF3A-211ENST00000618700 HIRAP54198 1017 aaPredicted RBP23.88■■□□□ 1.41
UPF3A-211ENST00000618700 GSTO1P78417 241 aa23.88■■□□□ 1.41
UPF3A-211ENST00000618700 USP50Q70EL3 339 aaPredicted RBP23.88■■□□□ 1.41
UPF3A-211ENST00000618700 SLF2Q8IX21 1173 aa23.88■■□□□ 1.41
UPF3A-211ENST00000618700 CLEC11AQ9Y240 323 aa23.88■■□□□ 1.41
UPF3A-211ENST00000618700 DAGLAQ9Y4D2 1042 aa23.88■■□□□ 1.41
UPF3A-211ENST00000618700 PCDHAC2Q9Y5I4 1007 aa23.88■■□□□ 1.41
UPF3A-211ENST00000618700 RFX7Q2KHR2 1363 aa23.88■■□□□ 1.41
UPF3A-211ENST00000618700 TCRBV5S4A2TA0A5A2 114 aa23.87■■□□□ 1.41
UPF3A-211ENST00000618700 ADD2P35612 726 aa23.87■■□□□ 1.41
UPF3A-211ENST00000618700 DLGAP5Q15398 846 aa23.87■■□□□ 1.41
UPF3A-211ENST00000618700 NAA16Q6N069 864 aaPredicted RBP23.87■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms