RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	APOBEC3F	Q8IUX4	373 aa	Known RBP	10.87	□□□□□ -0.67
SSBP4-208	ENST00000600628	ZNF384	Q8TF68	577 aa		10.87	□□□□□ -0.67
SSBP4-208	ENST00000600628	CDCA5	Q96FF9	252 aa		10.87	□□□□□ -0.67
SSBP4-208	ENST00000600628	DENND2A	Q9ULE3	1009 aa		10.87	□□□□□ -0.67
SSBP4-208	ENST00000600628	TTF2	Q9UNY4	1162 aa	Known RBP	10.87	□□□□□ -0.67
SSBP4-208	ENST00000600628	DOCK2	Q92608	1830 aa		10.86	□□□□□ -0.67
SSBP4-208	ENST00000600628	FAM155A	B1AL88	458 aa	Predicted RBP	10.86	□□□□□ -0.67
SSBP4-208	ENST00000600628	SURF6	O75683	361 aa	Known RBP	10.86	□□□□□ -0.67
SSBP4-208	ENST00000600628	ECE1	P42892	770 aa		10.86	□□□□□ -0.67
SSBP4-208	ENST00000600628	CRK	P46108	304 aa		10.86	□□□□□ -0.67
SSBP4-208	ENST00000600628	FKBP1B	P68106	108 aa		10.86	□□□□□ -0.67
SSBP4-208	ENST00000600628	TNNI3K	Q59H18	835 aa		10.86	□□□□□ -0.67
SSBP4-208	ENST00000600628	FKBP1C	Q5VVH2	108 aa		10.86	□□□□□ -0.67
SSBP4-208	ENST00000600628	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	10.86	□□□□□ -0.67
SSBP4-208	ENST00000600628	EAF2	Q96CJ1	260 aa	Predicted RBP	10.86	□□□□□ -0.67
SSBP4-208	ENST00000600628	FAM163A	Q96GL9	167 aa	Predicted RBP	10.86	□□□□□ -0.67
SSBP4-208	ENST00000600628	CAPNS2	Q96L46	248 aa		10.86	□□□□□ -0.67
SSBP4-208	ENST00000600628	TEPSIN	Q96N21	525 aa		10.86	□□□□□ -0.67
SSBP4-208	ENST00000600628	CHMP4B	Q9H444	224 aa	Known RBP	10.86	□□□□□ -0.67
SSBP4-208	ENST00000600628	FPGT-TNNI3K	V9GXZ4	949 aa		10.86	□□□□□ -0.67
SSBP4-208	ENST00000600628	RFX7	Q2KHR2	1363 aa		10.86	□□□□□ -0.67
SSBP4-208	ENST00000600628	GAK	O14976	1311 aa		10.85	□□□□□ -0.67
SSBP4-208	ENST00000600628		F8W031	263 aa	Predicted RBP	10.85	□□□□□ -0.67
SSBP4-208	ENST00000600628	PRDX5	P30044	214 aa		10.85	□□□□□ -0.67
SSBP4-208	ENST00000600628	MCAM	P43121	646 aa		10.85	□□□□□ -0.67
SSBP4-208	ENST00000600628	RRP1	P56182	461 aa	Known RBP	10.85	□□□□□ -0.67
SSBP4-208	ENST00000600628	CHAF1A	Q13111	956 aa	Predicted RBP	10.85	□□□□□ -0.67
SSBP4-208	ENST00000600628	MAP3K11	Q16584	847 aa		10.85	□□□□□ -0.67
SSBP4-208	ENST00000600628	CYP4F22	Q6NT55	531 aa		10.85	□□□□□ -0.67
SSBP4-208	ENST00000600628	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	10.85	□□□□□ -0.67
SSBP4-208	ENST00000600628	DEFB129	Q9H1M3	183 aa		10.85	□□□□□ -0.67
SSBP4-208	ENST00000600628	GBA2	Q9HCG7	927 aa	Predicted RBP	10.85	□□□□□ -0.67
SSBP4-208	ENST00000600628	GNL3L	Q9NVN8	582 aa	Known RBP	10.85	□□□□□ -0.67
SSBP4-208	ENST00000600628	HMG20B	Q9P0W2	317 aa		10.85	□□□□□ -0.67
SSBP4-208	ENST00000600628	DBNL	Q9UJU6	430 aa	Known RBP	10.85	□□□□□ -0.67
SSBP4-208	ENST00000600628	SCAF8	Q9UPN6	1271 aa	Known RBP	10.85	□□□□□ -0.67
SSBP4-208	ENST00000600628	PPP2R3B	Q9Y5P8	575 aa		10.85	□□□□□ -0.67
SSBP4-208	ENST00000600628	OTOF	Q9HC10	1997 aa		10.85	□□□□□ -0.67
SSBP4-208	ENST00000600628	MAST3	O60307	1309 aa		10.84	□□□□□ -0.67
SSBP4-208	ENST00000600628	IGSF3	O75054	1194 aa		10.84	□□□□□ -0.67
SSBP4-208	ENST00000600628	MAP2K2	P36507	400 aa		10.84	□□□□□ -0.67
SSBP4-208	ENST00000600628	LDLRAD1	Q5T700	205 aa		10.84	□□□□□ -0.67
SSBP4-208	ENST00000600628	C2orf69	Q8N8R5	385 aa		10.84	□□□□□ -0.67
SSBP4-208	ENST00000600628	TEKT1	Q969V4	418 aa		10.84	□□□□□ -0.67
SSBP4-208	ENST00000600628	WBP1L	Q9NX94	342 aa		10.84	□□□□□ -0.67
SSBP4-208	ENST00000600628	ZNF70	Q9UC06	446 aa	Predicted RBP	10.84	□□□□□ -0.67
SSBP4-208	ENST00000600628	DAGLA	Q9Y4D2	1042 aa		10.84	□□□□□ -0.67
SSBP4-208	ENST00000600628	RPAP1	Q9BWH6	1393 aa	Predicted RBP	10.84	□□□□□ -0.67
SSBP4-208	ENST00000600628	MAST2	Q6P0Q8	1798 aa		10.84	□□□□□ -0.67
SSBP4-208	ENST00000600628	CDK5RAP2	Q96SN8	1893 aa		10.84	□□□□□ -0.67
SSBP4-208	ENST00000600628	UNCX	A6NJT0	531 aa		10.83	□□□□□ -0.68
SSBP4-208	ENST00000600628	HUNK	P57058	714 aa		10.83	□□□□□ -0.68
SSBP4-208	ENST00000600628	MAP2K1	Q02750	393 aa	Predicted RBP	10.83	□□□□□ -0.68
SSBP4-208	ENST00000600628	GRM1	Q13255	1194 aa		10.83	□□□□□ -0.68
SSBP4-208	ENST00000600628	HSP90AB4P	Q58FF6	505 aa		10.83	□□□□□ -0.68
SSBP4-208	ENST00000600628	PI16	Q6UXB8	463 aa		10.83	□□□□□ -0.68
SSBP4-208	ENST00000600628	FAM83A	Q86UY5	434 aa		10.83	□□□□□ -0.68
SSBP4-208	ENST00000600628	ERC1	Q8IUD2	1116 aa		10.83	□□□□□ -0.68
SSBP4-208	ENST00000600628	ZGPAT	Q8N5A5	531 aa	Known RBP	10.83	□□□□□ -0.68
SSBP4-208	ENST00000600628	RHPN1	Q8TCX5	695 aa		10.83	□□□□□ -0.68
SSBP4-208	ENST00000600628	DBNDD2	Q9BQY9	259 aa		10.83	□□□□□ -0.68
SSBP4-208	ENST00000600628	TLR7	Q9NYK1	1049 aa	Known RBP	10.83	□□□□□ -0.68
SSBP4-208	ENST00000600628	EXOC6B	Q9Y2D4	811 aa		10.83	□□□□□ -0.68
SSBP4-208	ENST00000600628	FOCAD	Q5VW36	1801 aa		10.83	□□□□□ -0.68
SSBP4-208	ENST00000600628	HTT	P42858	3142 aa		10.82	□□□□□ -0.68
SSBP4-208	ENST00000600628	CLRN2	A0PK11	232 aa		10.82	□□□□□ -0.68
SSBP4-208	ENST00000600628	FRAT2	O75474	233 aa	Predicted RBP	10.82	□□□□□ -0.68
SSBP4-208	ENST00000600628	LDHB	P07195	334 aa	Known RBP	10.82	□□□□□ -0.68
SSBP4-208	ENST00000600628	UQCRFS1P1	P0C7P4	283 aa		10.82	□□□□□ -0.68
SSBP4-208	ENST00000600628	RASA3	Q14644	834 aa		10.82	□□□□□ -0.68
SSBP4-208	ENST00000600628	DIXDC1	Q155Q3	683 aa		10.82	□□□□□ -0.68
SSBP4-208	ENST00000600628	PRAMEF18	Q5VWM3	479 aa		10.82	□□□□□ -0.68
SSBP4-208	ENST00000600628	RGMB	Q6NW40	437 aa		10.82	□□□□□ -0.68
SSBP4-208	ENST00000600628	SPATA5	Q8NB90	893 aa		10.82	□□□□□ -0.68
SSBP4-208	ENST00000600628	NEUROD6	Q96NK8	337 aa		10.82	□□□□□ -0.68
SSBP4-208	ENST00000600628	TDRD3	Q9H7E2	651 aa	Known RBP	10.82	□□□□□ -0.68
SSBP4-208	ENST00000600628	PCDHB15	Q9Y5E8	787 aa		10.82	□□□□□ -0.68
SSBP4-208	ENST00000600628	ATRNL1	Q5VV63	1379 aa		10.81	□□□□□ -0.68
SSBP4-208	ENST00000600628	FOXN1	O15353	648 aa		10.81	□□□□□ -0.68
SSBP4-208	ENST00000600628	MYO1B	O43795	1136 aa		10.81	□□□□□ -0.68
SSBP4-208	ENST00000600628	AOC2	O75106	756 aa		10.81	□□□□□ -0.68
SSBP4-208	ENST00000600628	RAB11FIP3	O75154	756 aa		10.81	□□□□□ -0.68
SSBP4-208	ENST00000600628	HMMR	O75330	724 aa		10.81	□□□□□ -0.68
SSBP4-208	ENST00000600628	CYP2E1	P05181	493 aa	Predicted RBP	10.81	□□□□□ -0.68
SSBP4-208	ENST00000600628	SLC10A3	P09131	477 aa		10.81	□□□□□ -0.68
SSBP4-208	ENST00000600628	NBPF12	Q5TAG4	269 aa	Predicted RBP	10.81	□□□□□ -0.68
SSBP4-208	ENST00000600628	COL13A1	Q5TAT6	717 aa	Predicted RBP	10.81	□□□□□ -0.68
SSBP4-208	ENST00000600628	CDAN1	Q8IWY9	1227 aa		10.81	□□□□□ -0.68
SSBP4-208	ENST00000600628	AIDA	Q96BJ3	306 aa		10.81	□□□□□ -0.68
SSBP4-208	ENST00000600628	NSUN4	Q96CB9	384 aa	Known RBP	10.81	□□□□□ -0.68
SSBP4-208	ENST00000600628	KIF1BP	Q96EK5	621 aa		10.81	□□□□□ -0.68
SSBP4-208	ENST00000600628	ZIC5	Q96T25	663 aa		10.81	□□□□□ -0.68
SSBP4-208	ENST00000600628	DCTPP1	Q9H773	170 aa		10.81	□□□□□ -0.68
SSBP4-208	ENST00000600628	GPR75-ASB3	A0A0A6YYF3	556 aa		10.8	□□□□□ -0.68
SSBP4-208	ENST00000600628	NPM3	O75607	178 aa	Known RBP	10.8	□□□□□ -0.68
SSBP4-208	ENST00000600628	CTCF	P49711	727 aa	Predicted RBP	10.8	□□□□□ -0.68
SSBP4-208	ENST00000600628	RBM5	P52756	815 aa	Known RBP eCLIP	10.8	□□□□□ -0.68
SSBP4-208	ENST00000600628	RHBDL3	P58872	404 aa		10.8	□□□□□ -0.68
SSBP4-208	ENST00000600628	MAP3K10	Q02779	954 aa		10.8	□□□□□ -0.68
SSBP4-208	ENST00000600628	MECOM	Q03112	1051 aa		10.8	□□□□□ -0.68

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