RNA–Protein interactions for RNA: ENST00000598020.3

PNKP-211, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 534 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-211ENST00000598020 ZBTB47Q9UFB7 747 aaPredicted RBP24.83■■□□□ 1.57
PNKP-211ENST00000598020 NEFLP07196 543 aa24.82■■□□□ 1.56
PNKP-211ENST00000598020 CFAP100Q494V2 611 aa24.82■■□□□ 1.56
PNKP-211ENST00000598020 HHIPL2Q6UWX4 724 aa24.82■■□□□ 1.56
PNKP-211ENST00000598020 SNRKQ9NRH2 765 aa24.82■■□□□ 1.56
PNKP-211ENST00000598020 ECHDC1Q9NTX5 307 aa24.82■■□□□ 1.56
PNKP-211ENST00000598020 ABCF2Q9UG63 623 aa24.82■■□□□ 1.56
PNKP-211ENST00000598020 SPDYE2BA6NHP3 402 aa24.81■■□□□ 1.56
PNKP-211ENST00000598020 CYP2E1P05181 493 aaPredicted RBP24.81■■□□□ 1.56
PNKP-211ENST00000598020 SPDYE6P0CI01 402 aa24.81■■□□□ 1.56
PNKP-211ENST00000598020 ZAP70P43403 619 aa24.81■■□□□ 1.56
PNKP-211ENST00000598020 CRKP46108 304 aa24.81■■□□□ 1.56
PNKP-211ENST00000598020 NBPF9Q3BBW0 867 aa24.81■■□□□ 1.56
PNKP-211ENST00000598020 ERICH6Q7L0X2 663 aa24.81■■□□□ 1.56
PNKP-211ENST00000598020 TEKT1Q969V4 418 aa24.81■■□□□ 1.56
PNKP-211ENST00000598020 BCL11AQ9H165 835 aa24.81■■□□□ 1.56
PNKP-211ENST00000598020 NUCB1Q02818 461 aa24.8■■□□□ 1.56
PNKP-211ENST00000598020 TBC1D9Q6ZT07 1266 aa24.8■■□□□ 1.56
PNKP-211ENST00000598020 PITPNM2Q9BZ72 1349 aa24.8■■□□□ 1.56
PNKP-211ENST00000598020 MAP1SQ66K74 1059 aaPredicted RBP24.79■■□□□ 1.56
PNKP-211ENST00000598020 CNTROBQ8N137 903 aa24.79■■□□□ 1.56
PNKP-211ENST00000598020 GPATCH3Q96I76 525 aa24.79■■□□□ 1.56
PNKP-211ENST00000598020 PRMT6Q96LA8 375 aaPredicted RBP24.79■■□□□ 1.56
PNKP-211ENST00000598020 ZDHHC15Q96MV8 337 aa24.79■■□□□ 1.56
PNKP-211ENST00000598020 POLR2AP24928 1970 aaKnown RBP24.79■■□□□ 1.56
PNKP-211ENST00000598020 TTC41PQ6P2S7 1318 aa24.79■■□□□ 1.56
PNKP-211ENST00000598020 SALL3Q9BXA9 1300 aa24.79■■□□□ 1.56
PNKP-211ENST00000598020 ECM29Q5VYK3 1845 aa24.78■■□□□ 1.56
PNKP-211ENST00000598020 ITGBL1O95965 494 aaPredicted RBP24.78■■□□□ 1.56
PNKP-211ENST00000598020 FAM163AQ96GL9 167 aaPredicted RBP24.78■■□□□ 1.56
PNKP-211ENST00000598020 RBM5P52756 815 aaKnown RBP eCLIP24.77■■□□□ 1.56
PNKP-211ENST00000598020 C1QTNF8P60827 252 aa24.77■■□□□ 1.56
PNKP-211ENST00000598020 CHD1LQ86WJ1 897 aa24.77■■□□□ 1.56
PNKP-211ENST00000598020 SLF2Q8IX21 1173 aa24.77■■□□□ 1.56
PNKP-211ENST00000598020 DCPSQ96C86 337 aaKnown RBP24.77■■□□□ 1.56
PNKP-211ENST00000598020 HAUS7Q99871 368 aa24.77■■□□□ 1.56
PNKP-211ENST00000598020 GGA3Q9NZ52 723 aa24.77■■□□□ 1.56
PNKP-211ENST00000598020 LRP2BPQ9P2M1 347 aa24.77■■□□□ 1.56
PNKP-211ENST00000598020 PCDHAC2Q9Y5I4 1007 aa24.77■■□□□ 1.56
PNKP-211ENST00000598020 ASTN2O75129 1339 aaPredicted RBP24.77■■□□□ 1.56
PNKP-211ENST00000598020 MECOMQ03112 1051 aa24.76■■□□□ 1.55
PNKP-211ENST00000598020 TTF1Q15361 905 aaPredicted RBP24.76■■□□□ 1.55
PNKP-211ENST00000598020 ANGEL2Q5VTE6 544 aaKnown RBP24.76■■□□□ 1.55
PNKP-211ENST00000598020 ERICH6BQ5W0A0 696 aa24.76■■□□□ 1.55
PNKP-211ENST00000598020 B4GALNT3Q6L9W6 998 aa24.76■■□□□ 1.55
PNKP-211ENST00000598020 TMED8Q6PL24 325 aaPredicted RBP24.76■■□□□ 1.55
PNKP-211ENST00000598020 CDC37L1Q7L3B6 337 aa24.76■■□□□ 1.55
PNKP-211ENST00000598020 DZIP1Q86YF9 867 aaKnown RBP24.76■■□□□ 1.55
PNKP-211ENST00000598020 OTUD7AQ8TE49 926 aaPredicted RBP24.76■■□□□ 1.55
PNKP-211ENST00000598020 NSUN4Q96CB9 384 aaKnown RBP24.76■■□□□ 1.55
PNKP-211ENST00000598020 BOLA2Q9H3K6 86 aa24.76■■□□□ 1.55
PNKP-211ENST00000598020 PIH1D3Q9NQM4 214 aaKnown RBP24.76■■□□□ 1.55
PNKP-211ENST00000598020 GAKO14976 1311 aa24.76■■□□□ 1.55
PNKP-211ENST00000598020 MYH2Q9UKX2 1941 aa24.76■■□□□ 1.55
PNKP-211ENST00000598020 MYO1BO43795 1136 aa24.75■■□□□ 1.55
PNKP-211ENST00000598020 MX1P20591 662 aa24.75■■□□□ 1.55
PNKP-211ENST00000598020 DIXDC1Q155Q3 683 aa24.75■■□□□ 1.55
PNKP-211ENST00000598020 APOBEC3HQ6NTF7 200 aaKnown RBP24.75■■□□□ 1.55
PNKP-211ENST00000598020 ZNF384Q8TF68 577 aa24.75■■□□□ 1.55
PNKP-211ENST00000598020 LNPKQ9C0E8 428 aa24.75■■□□□ 1.55
PNKP-211ENST00000598020 RAI14Q9P0K7 980 aa24.75■■□□□ 1.55
PNKP-211ENST00000598020 STAP2Q9UGK3 403 aa24.75■■□□□ 1.55
PNKP-211ENST00000598020 DAGLAQ9Y4D2 1042 aa24.75■■□□□ 1.55
PNKP-211ENST00000598020 DOCK2Q92608 1830 aa24.75■■□□□ 1.55
PNKP-211ENST00000598020 MYO5AQ9Y4I1 1855 aaKnown RBP24.75■■□□□ 1.55
PNKP-211ENST00000598020 ERC2O15083 957 aa24.74■■□□□ 1.55
PNKP-211ENST00000598020 GSTO1P78417 241 aa24.74■■□□□ 1.55
PNKP-211ENST00000598020 SPDYE2Q495Y8 402 aa24.74■■□□□ 1.55
PNKP-211ENST00000598020 ANTXR1Q9H6X2 564 aa24.74■■□□□ 1.55
PNKP-211ENST00000598020 NDUFB9Q9Y6M9 179 aa24.74■■□□□ 1.55
PNKP-211ENST00000598020 PASKQ96RG2 1323 aa24.74■■□□□ 1.55
PNKP-211ENST00000598020 LDHCP07864 332 aa24.73■■□□□ 1.55
PNKP-211ENST00000598020 PI4K2BQ8TCG2 481 aa24.73■■□□□ 1.55
PNKP-211ENST00000598020 DNAJC2Q99543 621 aaKnown RBP24.73■■□□□ 1.55
PNKP-211ENST00000598020 PAG1Q9NWQ8 432 aa24.73■■□□□ 1.55
PNKP-211ENST00000598020 MAST2Q6P0Q8 1798 aa24.72■■□□□ 1.55
PNKP-211ENST00000598020 AOX1Q06278 1338 aa24.72■■□□□ 1.55
PNKP-211ENST00000598020 GLRX3O76003 335 aaKnown RBP24.72■■□□□ 1.55
PNKP-211ENST00000598020 KRT26Q7Z3Y9 468 aa24.72■■□□□ 1.55
PNKP-211ENST00000598020 APOBEC3FQ8IUX4 373 aaKnown RBP24.72■■□□□ 1.55
PNKP-211ENST00000598020 SULF1Q8IWU6 871 aa24.72■■□□□ 1.55
PNKP-211ENST00000598020 ZNF70Q9UC06 446 aaPredicted RBP24.72■■□□□ 1.55
PNKP-211ENST00000598020 MROH7-TTC4A0A0A0MT08 1334 aa24.71■■□□□ 1.55
PNKP-211ENST00000598020 GOLIM4O00461 696 aa24.71■■□□□ 1.55
PNKP-211ENST00000598020 PDE1AP54750 535 aa24.71■■□□□ 1.55
PNKP-211ENST00000598020 MAP3K12Q12852 859 aa24.71■■□□□ 1.55
PNKP-211ENST00000598020 USP48Q86UV5 1035 aa24.71■■□□□ 1.55
PNKP-211ENST00000598020 GLIS2Q9BZE0 524 aaPredicted RBP24.71■■□□□ 1.55
PNKP-211ENST00000598020 TDRD3Q9H7E2 651 aaKnown RBP24.71■■□□□ 1.55
PNKP-211ENST00000598020 GPR75-ASB3A0A0A6YYF3 556 aa24.7■■□□□ 1.54
PNKP-211ENST00000598020 IDH1O75874 414 aaKnown RBP24.7■■□□□ 1.54
PNKP-211ENST00000598020 TSHZ3Q63HK5 1081 aa24.7■■□□□ 1.54
PNKP-211ENST00000598020 FKBP1CQ5VVH2 108 aa24.69■■□□□ 1.54
PNKP-211ENST00000598020 NAA16Q6N069 864 aaPredicted RBP24.69■■□□□ 1.54
PNKP-211ENST00000598020 OSBPL3Q9H4L5 887 aa24.69■■□□□ 1.54
PNKP-211ENST00000598020 CLRN2A0PK11 232 aa24.68■■□□□ 1.54
PNKP-211ENST00000598020 MAP4K4O95819 1239 aaPredicted RBP24.68■■□□□ 1.54
PNKP-211ENST00000598020 CDC42EP5Q6NZY7 148 aa24.68■■□□□ 1.54
PNKP-211ENST00000598020 CENPQQ7L2Z9 268 aaPredicted RBP24.68■■□□□ 1.54
PNKP-211ENST00000598020 EDC3Q96F86 508 aaKnown RBP24.68■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms