RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 VEZTQ9HBM0 779 aa13.12□□□□□ -0.31
LIG1-213ENST00000596672 COPRSQ9NQ92 184 aa13.12□□□□□ -0.31
LIG1-213ENST00000596672 SERPINA10Q9UK55 444 aa13.12□□□□□ -0.31
LIG1-213ENST00000596672 LAMB1P07942 1786 aa13.12□□□□□ -0.31
LIG1-213ENST00000596672 PNMA6EA0A0J9YXQ4 647 aa13.11□□□□□ -0.31
LIG1-213ENST00000596672 CA12O43570 354 aa13.11□□□□□ -0.31
LIG1-213ENST00000596672 CIAO1O76071 339 aa13.11□□□□□ -0.31
LIG1-213ENST00000596672 RLBP1P12271 317 aa13.11□□□□□ -0.31
LIG1-213ENST00000596672 TM4SF4P48230 202 aa13.11□□□□□ -0.31
LIG1-213ENST00000596672 RBM5P52756 815 aaKnown RBP eCLIP13.11□□□□□ -0.31
LIG1-213ENST00000596672 SPRYD7Q5W111 196 aa13.11□□□□□ -0.31
LIG1-213ENST00000596672 CNKSR2Q8WXI2 1034 aa13.11□□□□□ -0.31
LIG1-213ENST00000596672 LPIN2Q92539 896 aa13.11□□□□□ -0.31
LIG1-213ENST00000596672 TMEM39BQ9GZU3 492 aa13.11□□□□□ -0.31
LIG1-213ENST00000596672 KIF16BQ96L93 1317 aa13.11□□□□□ -0.31
LIG1-213ENST00000596672 TNRC18O15417 2968 aaPredicted RBP13.1□□□□□ -0.31
LIG1-213ENST00000596672 TCP10L2B9ZVM9 353 aa13.1□□□□□ -0.31
LIG1-213ENST00000596672 TBC1D8O95759 1140 aa13.1□□□□□ -0.31
LIG1-213ENST00000596672 TIMM10P62072 90 aa13.1□□□□□ -0.31
LIG1-213ENST00000596672 HNRNPUQ00839 825 aaKnown RBP eCLIP13.1□□□□□ -0.31
LIG1-213ENST00000596672 CAP1Q01518 475 aa13.1□□□□□ -0.31
LIG1-213ENST00000596672 MTX1Q13505 466 aa13.1□□□□□ -0.31
LIG1-213ENST00000596672 ATF7IPQ6VMQ6 1270 aa13.1□□□□□ -0.31
LIG1-213ENST00000596672 TMEM57Q8N5G2 664 aa13.1□□□□□ -0.31
LIG1-213ENST00000596672 SAGE1Q9NXZ1 904 aa13.1□□□□□ -0.31
LIG1-213ENST00000596672 IFIT1P09914 478 aaKnown RBP13.09□□□□□ -0.31
LIG1-213ENST00000596672 PRDX5P30044 214 aa13.09□□□□□ -0.31
LIG1-213ENST00000596672 DIXDC1Q155Q3 683 aa13.09□□□□□ -0.31
LIG1-213ENST00000596672 ATP2B3Q16720 1220 aa13.09□□□□□ -0.31
LIG1-213ENST00000596672 CAVIN4Q5BKX8 364 aa13.09□□□□□ -0.31
LIG1-213ENST00000596672 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.09□□□□□ -0.31
LIG1-213ENST00000596672 ZNF384Q8TF68 577 aa13.09□□□□□ -0.31
LIG1-213ENST00000596672 FRAT1Q92837 279 aaPredicted RBP13.09□□□□□ -0.31
LIG1-213ENST00000596672 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.09□□□□□ -0.31
LIG1-213ENST00000596672 PDE4DIPQ5VU43 2346 aa13.08□□□□□ -0.31
LIG1-213ENST00000596672 IGF2BP3O00425 579 aaKnown RBP eCLIP13.08□□□□□ -0.32
LIG1-213ENST00000596672 SLC5A1P13866 664 aa13.08□□□□□ -0.32
LIG1-213ENST00000596672 HDLBPQ00341 1268 aaKnown RBP13.08□□□□□ -0.32
LIG1-213ENST00000596672 TFCP2Q12800 502 aa13.08□□□□□ -0.32
LIG1-213ENST00000596672 DGKZQ13574 1117 aa13.08□□□□□ -0.32
LIG1-213ENST00000596672 ARMC9Q7Z3E5 817 aa13.08□□□□□ -0.32
LIG1-213ENST00000596672 VPS37DQ86XT2 251 aa13.08□□□□□ -0.32
LIG1-213ENST00000596672 WNK4Q96J92 1243 aa13.08□□□□□ -0.32
LIG1-213ENST00000596672 ZDHHC15Q96MV8 337 aa13.08□□□□□ -0.32
LIG1-213ENST00000596672 PTPN18Q99952 460 aa13.08□□□□□ -0.32
LIG1-213ENST00000596672 CEP126Q9P2H0 1117 aa13.08□□□□□ -0.32
LIG1-213ENST00000596672 FBXO3Q9UK99 471 aa13.08□□□□□ -0.32
LIG1-213ENST00000596672 PPP2R3BQ9Y5P8 575 aa13.08□□□□□ -0.32
LIG1-213ENST00000596672 MYH2Q9UKX2 1941 aa13.07□□□□□ -0.32
LIG1-213ENST00000596672 CENPFP49454 3210 aa13.07□□□□□ -0.32
LIG1-213ENST00000596672 SLURP2P0DP57 97 aa13.07□□□□□ -0.32
LIG1-213ENST00000596672 NF2P35240 595 aa13.07□□□□□ -0.32
LIG1-213ENST00000596672 IL15P40933 162 aaPredicted RBP13.07□□□□□ -0.32
LIG1-213ENST00000596672 NFIAQ12857 509 aa13.07□□□□□ -0.32
LIG1-213ENST00000596672 CCDC102BQ68D86 513 aa13.07□□□□□ -0.32
LIG1-213ENST00000596672 ZFPM1Q8IX07 1006 aa13.07□□□□□ -0.32
LIG1-213ENST00000596672 MRIQ9BWK5 157 aa13.07□□□□□ -0.32
LIG1-213ENST00000596672 DAGLAQ9Y4D2 1042 aa13.07□□□□□ -0.32
LIG1-213ENST00000596672 MYO5AQ9Y4I1 1855 aaKnown RBP13.06□□□□□ -0.32
LIG1-213ENST00000596672 SRGAP3O43295 1099 aa13.06□□□□□ -0.32
LIG1-213ENST00000596672 RASGRF1Q13972 1273 aa13.06□□□□□ -0.32
LIG1-213ENST00000596672 HHIPL2Q6UWX4 724 aa13.06□□□□□ -0.32
LIG1-213ENST00000596672 PI16Q6UXB8 463 aa13.06□□□□□ -0.32
LIG1-213ENST00000596672 TBC1D22AQ8WUA7 517 aa13.06□□□□□ -0.32
LIG1-213ENST00000596672 ZNF296Q8WUU4 475 aaPredicted RBP13.06□□□□□ -0.32
LIG1-213ENST00000596672 SLC10A4Q96EP9 437 aa13.06□□□□□ -0.32
LIG1-213ENST00000596672 C1orf115Q9H7X2 142 aa13.06□□□□□ -0.32
LIG1-213ENST00000596672 MYO1BO43795 1136 aa13.05□□□□□ -0.32
LIG1-213ENST00000596672 FRAT2O75474 233 aaPredicted RBP13.05□□□□□ -0.32
LIG1-213ENST00000596672 SUPT20HL1Q3ZLR7 823 aa13.05□□□□□ -0.32
LIG1-213ENST00000596672 CDC42EP5Q6NZY7 148 aa13.05□□□□□ -0.32
LIG1-213ENST00000596672 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.05□□□□□ -0.32
LIG1-213ENST00000596672 TEKT1Q969V4 418 aa13.05□□□□□ -0.32
LIG1-213ENST00000596672 XAGE2Q96GT9 111 aa13.05□□□□□ -0.32
LIG1-213ENST00000596672 MS4A4AQ96JQ5 239 aa13.05□□□□□ -0.32
LIG1-213ENST00000596672 ELP3Q9H9T3 547 aa13.05□□□□□ -0.32
LIG1-213ENST00000596672 FAM198AQ9UFP1 575 aa13.05□□□□□ -0.32
LIG1-213ENST00000596672 KIAA0100Q14667 2235 aaKnown RBP13.05□□□□□ -0.32
LIG1-213ENST00000596672 A0A1B0GUL7 405 aa13.04□□□□□ -0.32
LIG1-213ENST00000596672 CCDC85CA6NKD9 419 aa13.04□□□□□ -0.32
LIG1-213ENST00000596672 ZBTB22O15209 634 aa13.04□□□□□ -0.32
LIG1-213ENST00000596672 PPP1R12BO60237 982 aaPredicted RBP13.04□□□□□ -0.32
LIG1-213ENST00000596672 GNAI3P08754 354 aa13.04□□□□□ -0.32
LIG1-213ENST00000596672 VGLL4Q14135 290 aa13.04□□□□□ -0.32
LIG1-213ENST00000596672 POLA2Q14181 598 aa13.04□□□□□ -0.32
LIG1-213ENST00000596672 SUGT1Q9Y2Z0 365 aa13.04□□□□□ -0.32
LIG1-213ENST00000596672 SALL1Q9NSC2 1324 aa13.04□□□□□ -0.32
LIG1-213ENST00000596672 TESPA1A2RU30 521 aaPredicted RBP13.03□□□□□ -0.32
LIG1-213ENST00000596672 GPR25O00155 361 aa13.03□□□□□ -0.32
LIG1-213ENST00000596672 ZBTB7BO15156 539 aaPredicted RBP13.03□□□□□ -0.32
LIG1-213ENST00000596672 IPO8O15397 1037 aaKnown RBP13.03□□□□□ -0.32
LIG1-213ENST00000596672 GNAI2P04899 355 aa13.03□□□□□ -0.32
LIG1-213ENST00000596672 ZKSCAN2Q63HK3 967 aa13.03□□□□□ -0.32
LIG1-213ENST00000596672 SH3BP5LQ7L8J4 393 aa13.03□□□□□ -0.32
LIG1-213ENST00000596672 IFNL1Q8IU54 200 aa13.03□□□□□ -0.32
LIG1-213ENST00000596672 REM2Q8IYK8 340 aaPredicted RBP13.03□□□□□ -0.32
LIG1-213ENST00000596672 WDR66Q8TBY9 1149 aa13.03□□□□□ -0.32
LIG1-213ENST00000596672 BRI3BPQ8WY22 251 aa13.03□□□□□ -0.32
LIG1-213ENST00000596672 CFHR5Q9BXR6 569 aa13.03□□□□□ -0.32
LIG1-213ENST00000596672 SNCAIPQ9Y6H5 919 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms