RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 GNL3LQ9NVN8 582 aaKnown RBP13.06□□□□□ -0.32
LIG3-212ENST00000590181 CEP126Q9P2H0 1117 aa13.06□□□□□ -0.32
LIG3-212ENST00000590181 SERPINA10Q9UK55 444 aa13.06□□□□□ -0.32
LIG3-212ENST00000590181 FRAT2O75474 233 aaPredicted RBP13.05□□□□□ -0.32
LIG3-212ENST00000590181 SLC5A1P13866 664 aa13.05□□□□□ -0.32
LIG3-212ENST00000590181 RFX5P48382 616 aaPredicted RBP13.05□□□□□ -0.32
LIG3-212ENST00000590181 TNFAIP1Q13829 316 aa13.05□□□□□ -0.32
LIG3-212ENST00000590181 ARMC9Q7Z3E5 817 aa13.05□□□□□ -0.32
LIG3-212ENST00000590181 R3HDMLQ9H3Y0 253 aa13.05□□□□□ -0.32
LIG3-212ENST00000590181 CHMP4BQ9H444 224 aaKnown RBP13.05□□□□□ -0.32
LIG3-212ENST00000590181 AKAP2Q9Y2D5 859 aa13.05□□□□□ -0.32
LIG3-212ENST00000590181 MAST3O60307 1309 aa13.05□□□□□ -0.32
LIG3-212ENST00000590181 SEMA3EO15041 775 aa13.04□□□□□ -0.32
LIG3-212ENST00000590181 GNAI2P04899 355 aa13.04□□□□□ -0.32
LIG3-212ENST00000590181 TRIM27P14373 513 aa13.04□□□□□ -0.32
LIG3-212ENST00000590181 FGFR2P21802 821 aa13.04□□□□□ -0.32
LIG3-212ENST00000590181 LRRC24Q50LG9 513 aa13.04□□□□□ -0.32
LIG3-212ENST00000590181 KIAA0825Q8IV33 1275 aa13.04□□□□□ -0.32
LIG3-212ENST00000590181 PUS3Q9BZE2 481 aaKnown RBP13.04□□□□□ -0.32
LIG3-212ENST00000590181 KIAA0100Q14667 2235 aaKnown RBP13.04□□□□□ -0.32
LIG3-212ENST00000590181 IGSF3O75054 1194 aa13.03□□□□□ -0.32
LIG3-212ENST00000590181 ALDH1A1P00352 501 aa13.03□□□□□ -0.32
LIG3-212ENST00000590181 KLRK1P26718 216 aa13.03□□□□□ -0.32
LIG3-212ENST00000590181 SUPT20HL1Q3ZLR7 823 aa13.03□□□□□ -0.32
LIG3-212ENST00000590181 MFSD14BQ5SR56 506 aa13.03□□□□□ -0.32
LIG3-212ENST00000590181 SPRYD7Q5W111 196 aa13.03□□□□□ -0.32
LIG3-212ENST00000590181 WDR66Q8TBY9 1149 aa13.03□□□□□ -0.32
LIG3-212ENST00000590181 FRAT1Q92837 279 aaPredicted RBP13.03□□□□□ -0.32
LIG3-212ENST00000590181 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.03□□□□□ -0.32
LIG3-212ENST00000590181 ANGEL1Q9UNK9 670 aaKnown RBP13.03□□□□□ -0.32
LIG3-212ENST00000590181 TRIM17Q9Y577 477 aa13.03□□□□□ -0.32
LIG3-212ENST00000590181 LRRFIP2Q9Y608 721 aaKnown RBP13.03□□□□□ -0.32
LIG3-212ENST00000590181 CEP290O15078 2479 aa13.02□□□□□ -0.32
LIG3-212ENST00000590181 ATG9AQ7Z3C6 839 aa13.02□□□□□ -0.33
LIG3-212ENST00000590181 FTSJ3Q8IY81 847 aaKnown RBP13.02□□□□□ -0.33
LIG3-212ENST00000590181 ZGPATQ8N5A5 531 aaKnown RBP13.02□□□□□ -0.33
LIG3-212ENST00000590181 FZD1Q9UP38 647 aa13.02□□□□□ -0.33
LIG3-212ENST00000590181 ZSWIM8A7E2V4 1837 aa13.02□□□□□ -0.33
LIG3-212ENST00000590181 POTEFA5A3E0 1075 aa13.01□□□□□ -0.33
LIG3-212ENST00000590181 SPDYE2BA6NHP3 402 aa13.01□□□□□ -0.33
LIG3-212ENST00000590181 MANSC4A6NHS7 340 aaPredicted RBP13.01□□□□□ -0.33
LIG3-212ENST00000590181 BCAR3O75815 825 aa13.01□□□□□ -0.33
LIG3-212ENST00000590181 SPDYE6P0CI01 402 aa13.01□□□□□ -0.33
LIG3-212ENST00000590181 GYG1P46976 350 aa13.01□□□□□ -0.33
LIG3-212ENST00000590181 HABP4Q5JVS0 413 aaKnown RBP13.01□□□□□ -0.33
LIG3-212ENST00000590181 LDLRAD1Q5T700 205 aa13.01□□□□□ -0.33
LIG3-212ENST00000590181 OTOP1Q7RTM1 612 aa13.01□□□□□ -0.33
LIG3-212ENST00000590181 DZIP1LQ8IYY4 767 aaKnown RBP13.01□□□□□ -0.33
LIG3-212ENST00000590181 HOOK2Q96ED9 719 aa13.01□□□□□ -0.33
LIG3-212ENST00000590181 WNK4Q96J92 1243 aa13.01□□□□□ -0.33
LIG3-212ENST00000590181 PDS5AQ29RF7 1337 aaKnown RBP13.01□□□□□ -0.33
LIG3-212ENST00000590181 SNAP23O00161 211 aa13□□□□□ -0.33
LIG3-212ENST00000590181 SRGAP3O43295 1099 aa13□□□□□ -0.33
LIG3-212ENST00000590181 PPP1R12BO60237 982 aaPredicted RBP13□□□□□ -0.33
LIG3-212ENST00000590181 TNNI2P48788 182 aa13□□□□□ -0.33
LIG3-212ENST00000590181 FKBP1CQ5VVH2 108 aa13□□□□□ -0.33
LIG3-212ENST00000590181 HHIPL2Q6UWX4 724 aa13□□□□□ -0.33
LIG3-212ENST00000590181 IFNL1Q8IU54 200 aa13□□□□□ -0.33
LIG3-212ENST00000590181 CERS5Q8N5B7 392 aa13□□□□□ -0.33
LIG3-212ENST00000590181 MEIS3Q99687 375 aa13□□□□□ -0.33
LIG3-212ENST00000590181 DENND2AQ9ULE3 1009 aa13□□□□□ -0.33
LIG3-212ENST00000590181 TTF2Q9UNY4 1162 aaKnown RBP13□□□□□ -0.33
LIG3-212ENST00000590181 SALL1Q9NSC2 1324 aa12.99□□□□□ -0.33
LIG3-212ENST00000590181 IGF2BP3O00425 579 aaKnown RBP eCLIP12.99□□□□□ -0.33
LIG3-212ENST00000590181 ZBTB48P10074 688 aaPredicted RBP12.99□□□□□ -0.33
LIG3-212ENST00000590181 RBM5P52756 815 aaKnown RBP eCLIP12.99□□□□□ -0.33
LIG3-212ENST00000590181 ATP2B3Q16720 1220 aa12.99□□□□□ -0.33
LIG3-212ENST00000590181 CFAP100Q494V2 611 aa12.99□□□□□ -0.33
LIG3-212ENST00000590181 SLF2Q8IX21 1173 aa12.99□□□□□ -0.33
LIG3-212ENST00000590181 TEKT1Q969V4 418 aa12.99□□□□□ -0.33
LIG3-212ENST00000590181 ERO1AQ96HE7 468 aa12.99□□□□□ -0.33
LIG3-212ENST00000590181 CLMNQ96JQ2 1002 aa12.99□□□□□ -0.33
LIG3-212ENST00000590181 DEFB129Q9H1M3 183 aa12.99□□□□□ -0.33
LIG3-212ENST00000590181 MYH13Q9UKX3 1938 aa12.98□□□□□ -0.33
LIG3-212ENST00000590181 BCAMP50895 628 aa12.98□□□□□ -0.33
LIG3-212ENST00000590181 INHBEP58166 350 aa12.98□□□□□ -0.33
LIG3-212ENST00000590181 G3BP1Q13283 466 aaKnown RBP eCLIP12.98□□□□□ -0.33
LIG3-212ENST00000590181 MVPQ14764 893 aaKnown RBP12.98□□□□□ -0.33
LIG3-212ENST00000590181 MAP3K11Q16584 847 aa12.98□□□□□ -0.33
LIG3-212ENST00000590181 SPTY2D1Q68D10 685 aaPredicted RBP12.98□□□□□ -0.33
LIG3-212ENST00000590181 KLHDC4Q8TBB5 520 aa12.98□□□□□ -0.33
LIG3-212ENST00000590181 CD99L2Q8TCZ2 262 aa12.98□□□□□ -0.33
LIG3-212ENST00000590181 ZDHHC15Q96MV8 337 aa12.98□□□□□ -0.33
LIG3-212ENST00000590181 ATP8B2P98198 1209 aa12.97□□□□□ -0.33
LIG3-212ENST00000590181 CRHR2Q13324 411 aa12.97□□□□□ -0.33
LIG3-212ENST00000590181 SPDYE2Q495Y8 402 aa12.97□□□□□ -0.33
LIG3-212ENST00000590181 SLC10A4Q96EP9 437 aa12.97□□□□□ -0.33
LIG3-212ENST00000590181 PRMT6Q96LA8 375 aaPredicted RBP12.97□□□□□ -0.33
LIG3-212ENST00000590181 GPR108Q9NPR9 543 aa12.97□□□□□ -0.33
LIG3-212ENST00000590181 TMOD2Q9NZR1 351 aa12.97□□□□□ -0.33
LIG3-212ENST00000590181 PTPN22Q9Y2R2 807 aa12.97□□□□□ -0.33
LIG3-212ENST00000590181 CLRN2A0PK11 232 aa12.96□□□□□ -0.33
LIG3-212ENST00000590181 MAP4K4O95819 1239 aaPredicted RBP12.96□□□□□ -0.33
LIG3-212ENST00000590181 CRKP46108 304 aa12.96□□□□□ -0.33
LIG3-212ENST00000590181 IREB2P48200 963 aaKnown RBP12.96□□□□□ -0.33
LIG3-212ENST00000590181 HSP90AB4PQ58FF6 505 aa12.96□□□□□ -0.33
LIG3-212ENST00000590181 TMED8Q6PL24 325 aaPredicted RBP12.96□□□□□ -0.33
LIG3-212ENST00000590181 FAM83AQ86UY5 434 aa12.96□□□□□ -0.33
LIG3-212ENST00000590181 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.96□□□□□ -0.33
LIG3-212ENST00000590181 SSH3Q8TE77 659 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms