RNA–Protein interactions for RNA: ENST00000590035.5

RETREG3-209, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 2

Gene RETREG3, Length 518 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-209ENST00000590035 WNK4Q96J92 1243 aa13.14□□□□□ -0.31
RETREG3-209ENST00000590035 CENPFP49454 3210 aa13.14□□□□□ -0.31
RETREG3-209ENST00000590035 TESPA1A2RU30 521 aaPredicted RBP13.13□□□□□ -0.31
RETREG3-209ENST00000590035 E9PSI1 815 aa13.13□□□□□ -0.31
RETREG3-209ENST00000590035 IGF2BP3O00425 579 aaKnown RBP eCLIP13.13□□□□□ -0.31
RETREG3-209ENST00000590035 PLIN1O60240 522 aa13.13□□□□□ -0.31
RETREG3-209ENST00000590035 FGFR2P21802 821 aa13.13□□□□□ -0.31
RETREG3-209ENST00000590035 INHBEP58166 350 aa13.13□□□□□ -0.31
RETREG3-209ENST00000590035 RASA3Q14644 834 aa13.13□□□□□ -0.31
RETREG3-209ENST00000590035 TAF7LQ5H9L4 462 aa13.13□□□□□ -0.31
RETREG3-209ENST00000590035 ZNF70Q9UC06 446 aaPredicted RBP13.13□□□□□ -0.31
RETREG3-209ENST00000590035 HPS5Q9UPZ3 1129 aa13.13□□□□□ -0.31
RETREG3-209ENST00000590035 BRCA2P51587 3418 aa13.13□□□□□ -0.31
RETREG3-209ENST00000590035 MANSC4A6NHS7 340 aaPredicted RBP13.12□□□□□ -0.31
RETREG3-209ENST00000590035 MYO1BO43795 1136 aa13.12□□□□□ -0.31
RETREG3-209ENST00000590035 PPP1R12BO60237 982 aaPredicted RBP13.12□□□□□ -0.31
RETREG3-209ENST00000590035 PDE8BO95263 885 aa13.12□□□□□ -0.31
RETREG3-209ENST00000590035 SLC34A2O95436 690 aa13.12□□□□□ -0.31
RETREG3-209ENST00000590035 ALDH1A1P00352 501 aa13.12□□□□□ -0.31
RETREG3-209ENST00000590035 HDLBPQ00341 1268 aaKnown RBP13.12□□□□□ -0.31
RETREG3-209ENST00000590035 MKRN3Q13064 507 aaKnown RBP13.12□□□□□ -0.31
RETREG3-209ENST00000590035 SUPT20HL1Q3ZLR7 823 aa13.12□□□□□ -0.31
RETREG3-209ENST00000590035 IFNL1Q8IU54 200 aa13.12□□□□□ -0.31
RETREG3-209ENST00000590035 CDAN1Q8IWY9 1227 aa13.12□□□□□ -0.31
RETREG3-209ENST00000590035 DZIP1LQ8IYY4 767 aaKnown RBP13.12□□□□□ -0.31
RETREG3-209ENST00000590035 MRIQ9BWK5 157 aa13.12□□□□□ -0.31
RETREG3-209ENST00000590035 TTF2Q9UNY4 1162 aaKnown RBP13.12□□□□□ -0.31
RETREG3-209ENST00000590035 MKI67P46013 3256 aaKnown RBP13.12□□□□□ -0.31
RETREG3-209ENST00000590035 ALDH1L2Q3SY69 923 aa13.11□□□□□ -0.31
RETREG3-209ENST00000590035 SLC10A4Q96EP9 437 aa13.11□□□□□ -0.31
RETREG3-209ENST00000590035 FKTNO75072 461 aa13.1□□□□□ -0.31
RETREG3-209ENST00000590035 CRKP46108 304 aa13.1□□□□□ -0.31
RETREG3-209ENST00000590035 IREB2P48200 963 aaKnown RBP13.1□□□□□ -0.31
RETREG3-209ENST00000590035 SOX10P56693 466 aa13.1□□□□□ -0.31
RETREG3-209ENST00000590035 TNFAIP1Q13829 316 aa13.1□□□□□ -0.31
RETREG3-209ENST00000590035 FBXO46Q6PJ61 603 aaPredicted RBP13.1□□□□□ -0.31
RETREG3-209ENST00000590035 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.1□□□□□ -0.31
RETREG3-209ENST00000590035 ANKRD13AQ8IZ07 590 aa13.1□□□□□ -0.31
RETREG3-209ENST00000590035 KLHDC4Q8TBB5 520 aa13.1□□□□□ -0.31
RETREG3-209ENST00000590035 MS4A4AQ96JQ5 239 aa13.1□□□□□ -0.31
RETREG3-209ENST00000590035 PTPN18Q99952 460 aa13.1□□□□□ -0.31
RETREG3-209ENST00000590035 TDRD3Q9H7E2 651 aaKnown RBP13.1□□□□□ -0.31
RETREG3-209ENST00000590035 VEZTQ9HBM0 779 aa13.1□□□□□ -0.31
RETREG3-209ENST00000590035 CAP1Q01518 475 aa13.09□□□□□ -0.31
RETREG3-209ENST00000590035 ATG9AQ7Z3C6 839 aa13.09□□□□□ -0.31
RETREG3-209ENST00000590035 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.09□□□□□ -0.31
RETREG3-209ENST00000590035 TBC1D22AQ8WUA7 517 aa13.09□□□□□ -0.31
RETREG3-209ENST00000590035 RPAP1Q9BWH6 1393 aaPredicted RBP13.08□□□□□ -0.31
RETREG3-209ENST00000590035 RBBP6Q7Z6E9 1792 aaKnown RBP13.08□□□□□ -0.32
RETREG3-209ENST00000590035 EYA2O00167 538 aa13.08□□□□□ -0.32
RETREG3-209ENST00000590035 BCAMP50895 628 aa13.08□□□□□ -0.32
RETREG3-209ENST00000590035 METTL24Q5JXM2 366 aa13.08□□□□□ -0.32
RETREG3-209ENST00000590035 FKBP1CQ5VVH2 108 aa13.08□□□□□ -0.32
RETREG3-209ENST00000590035 APOBEC3HQ6NTF7 200 aaKnown RBP13.08□□□□□ -0.32
RETREG3-209ENST00000590035 CDCA7LQ96GN5 454 aa13.08□□□□□ -0.32
RETREG3-209ENST00000590035 ZDHHC15Q96MV8 337 aa13.08□□□□□ -0.32
RETREG3-209ENST00000590035 TMEM39BQ9GZU3 492 aa13.08□□□□□ -0.32
RETREG3-209ENST00000590035 SUGT1Q9Y2Z0 365 aa13.08□□□□□ -0.32
RETREG3-209ENST00000590035 KIAA0100Q14667 2235 aaKnown RBP13.08□□□□□ -0.32
RETREG3-209ENST00000590035 RBM5P52756 815 aaKnown RBP eCLIP13.07□□□□□ -0.32
RETREG3-209ENST00000590035 PUM3Q15397 648 aaKnown RBP13.07□□□□□ -0.32
RETREG3-209ENST00000590035 FBXO3Q9UK99 471 aa13.07□□□□□ -0.32
RETREG3-209ENST00000590035 IQSEC3Q9UPP2 1182 aaPredicted RBP13.07□□□□□ -0.32
RETREG3-209ENST00000590035 MYH13Q9UKX3 1938 aa13.07□□□□□ -0.32
RETREG3-209ENST00000590035 CT47B1P0C2W7 299 aaPredicted RBP13.06□□□□□ -0.32
RETREG3-209ENST00000590035 CRHR2Q13324 411 aa13.06□□□□□ -0.32
RETREG3-209ENST00000590035 VGLL4Q14135 290 aa13.06□□□□□ -0.32
RETREG3-209ENST00000590035 CAVIN4Q5BKX8 364 aa13.06□□□□□ -0.32
RETREG3-209ENST00000590035 HHIPL2Q6UWX4 724 aa13.06□□□□□ -0.32
RETREG3-209ENST00000590035 OTOP1Q7RTM1 612 aa13.06□□□□□ -0.32
RETREG3-209ENST00000590035 FAM83AQ86UY5 434 aa13.06□□□□□ -0.32
RETREG3-209ENST00000590035 BRI3BPQ8WY22 251 aa13.06□□□□□ -0.32
RETREG3-209ENST00000590035 OPTNQ96CV9 577 aa13.06□□□□□ -0.32
RETREG3-209ENST00000590035 TCP10L2B9ZVM9 353 aa13.05□□□□□ -0.32
RETREG3-209ENST00000590035 CIAO1O76071 339 aa13.05□□□□□ -0.32
RETREG3-209ENST00000590035 CHAF1AQ13111 956 aaPredicted RBP13.05□□□□□ -0.32
RETREG3-209ENST00000590035 LPIN2Q92539 896 aa13.05□□□□□ -0.32
RETREG3-209ENST00000590035 TEKT1Q969V4 418 aa13.05□□□□□ -0.32
RETREG3-209ENST00000590035 SNCAIPQ9Y6H5 919 aa13.05□□□□□ -0.32
RETREG3-209ENST00000590035 SPDYE5A6NIY4 337 aa13.04□□□□□ -0.32
RETREG3-209ENST00000590035 IFIT1P09914 478 aaKnown RBP13.04□□□□□ -0.32
RETREG3-209ENST00000590035 MAP3K9P80192 1104 aa13.04□□□□□ -0.32
RETREG3-209ENST00000590035 VPS37DQ86XT2 251 aa13.04□□□□□ -0.32
RETREG3-209ENST00000590035 ELP3Q9H9T3 547 aa13.04□□□□□ -0.32
RETREG3-209ENST00000590035 MAST3O60307 1309 aa13.04□□□□□ -0.32
RETREG3-209ENST00000590035 TNNI2P48788 182 aa13.03□□□□□ -0.32
RETREG3-209ENST00000590035 CACNB3P54284 484 aa13.03□□□□□ -0.32
RETREG3-209ENST00000590035 SMC4Q9NTJ3 1288 aa13.03□□□□□ -0.32
RETREG3-209ENST00000590035 PTPN22Q9Y2R2 807 aa13.03□□□□□ -0.32
RETREG3-209ENST00000590035 SALL1Q9NSC2 1324 aa13.03□□□□□ -0.32
RETREG3-209ENST00000590035 RFX7Q2KHR2 1363 aa13.03□□□□□ -0.32
RETREG3-209ENST00000590035 ATRNL1Q5VV63 1379 aa13.03□□□□□ -0.32
RETREG3-209ENST00000590035 GTF2A2P52657 109 aa13.02□□□□□ -0.33
RETREG3-209ENST00000590035 OTUD7BQ6GQQ9 843 aa13.02□□□□□ -0.33
RETREG3-209ENST00000590035 FAM43AQ8N2R8 423 aa13.02□□□□□ -0.33
RETREG3-209ENST00000590035 WDR66Q8TBY9 1149 aa13.02□□□□□ -0.33
RETREG3-209ENST00000590035 ARMC5Q96C12 935 aa13.02□□□□□ -0.33
RETREG3-209ENST00000590035 ERO1AQ96HE7 468 aa13.02□□□□□ -0.33
RETREG3-209ENST00000590035 ZCCHC17Q9NP64 241 aaKnown RBP13.02□□□□□ -0.33
RETREG3-209ENST00000590035 COPRSQ9NQ92 184 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms