RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 CCDC102BQ68D86 513 aa13.4□□□□□ -0.26
CLIP3-203ENST00000586457 ARMC9Q7Z3E5 817 aa13.4□□□□□ -0.26
CLIP3-203ENST00000586457 ERC1Q8IUD2 1116 aa13.4□□□□□ -0.26
CLIP3-203ENST00000586457 SLF2Q8IX21 1173 aa13.4□□□□□ -0.26
CLIP3-203ENST00000586457 SSH3Q8TE77 659 aa13.4□□□□□ -0.26
CLIP3-203ENST00000586457 CCDC102AQ96A19 550 aa13.4□□□□□ -0.26
CLIP3-203ENST00000586457 XAGE2Q96GT9 111 aa13.4□□□□□ -0.26
CLIP3-203ENST00000586457 PRMT6Q96LA8 375 aaPredicted RBP13.4□□□□□ -0.26
CLIP3-203ENST00000586457 DEFB129Q9H1M3 183 aa13.4□□□□□ -0.26
CLIP3-203ENST00000586457 A0A1B0GUL6 1792 aa13.4□□□□□ -0.26
CLIP3-203ENST00000586457 TRPM7Q96QT4 1865 aa13.4□□□□□ -0.26
CLIP3-203ENST00000586457 PHKA1P46020 1223 aa13.39□□□□□ -0.27
CLIP3-203ENST00000586457 POLA2Q14181 598 aa13.39□□□□□ -0.27
CLIP3-203ENST00000586457 PRAMEF18Q5VWM3 479 aa13.39□□□□□ -0.27
CLIP3-203ENST00000586457 RGMBQ6NW40 437 aa13.39□□□□□ -0.27
CLIP3-203ENST00000586457 RPAP2Q8IXW5 612 aaPredicted RBP13.39□□□□□ -0.27
CLIP3-203ENST00000586457 BCL11AQ9H165 835 aa13.39□□□□□ -0.27
CLIP3-203ENST00000586457 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.39□□□□□ -0.27
CLIP3-203ENST00000586457 ABCF2Q9UG63 623 aa13.39□□□□□ -0.27
CLIP3-203ENST00000586457 PPP2R3BQ9Y5P8 575 aa13.39□□□□□ -0.27
CLIP3-203ENST00000586457 PPP1R12BO60237 982 aaPredicted RBP13.38□□□□□ -0.27
CLIP3-203ENST00000586457 UQCRFS1P1P0C7P4 283 aa13.38□□□□□ -0.27
CLIP3-203ENST00000586457 HSPA1AP0DMV8 641 aaKnown RBP13.38□□□□□ -0.27
CLIP3-203ENST00000586457 HSPA1BP0DMV9 641 aaKnown RBP13.38□□□□□ -0.27
CLIP3-203ENST00000586457 ADORA1P30542 326 aa13.38□□□□□ -0.27
CLIP3-203ENST00000586457 MAP2K2P36507 400 aa13.38□□□□□ -0.27
CLIP3-203ENST00000586457 PRKG1Q13976 671 aa13.38□□□□□ -0.27
CLIP3-203ENST00000586457 TTC39AQ5SRH9 613 aa13.38□□□□□ -0.27
CLIP3-203ENST00000586457 DZIP1Q86YF9 867 aaKnown RBP13.38□□□□□ -0.27
CLIP3-203ENST00000586457 MRIQ9BWK5 157 aa13.38□□□□□ -0.27
CLIP3-203ENST00000586457 TDRD3Q9H7E2 651 aaKnown RBP13.38□□□□□ -0.27
CLIP3-203ENST00000586457 POLR2AP24928 1970 aaKnown RBP13.38□□□□□ -0.27
CLIP3-203ENST00000586457 NOGQ13253 232 aa13.37□□□□□ -0.27
CLIP3-203ENST00000586457 CEP85Q6P2H3 762 aa13.37□□□□□ -0.27
CLIP3-203ENST00000586457 ZNF70Q9UC06 446 aaPredicted RBP13.37□□□□□ -0.27
CLIP3-203ENST00000586457 TCP10L2B9ZVM9 353 aa13.36□□□□□ -0.27
CLIP3-203ENST00000586457 UBE2Q2LH0YL09 131 aa13.36□□□□□ -0.27
CLIP3-203ENST00000586457 APBB1O00213 710 aa13.36□□□□□ -0.27
CLIP3-203ENST00000586457 RASA3Q14644 834 aa13.36□□□□□ -0.27
CLIP3-203ENST00000586457 HHIPL2Q6UWX4 724 aa13.36□□□□□ -0.27
CLIP3-203ENST00000586457 ERICH6Q7L0X2 663 aa13.36□□□□□ -0.27
CLIP3-203ENST00000586457 HOOK2Q96ED9 719 aa13.36□□□□□ -0.27
CLIP3-203ENST00000586457 ZBED3Q96IU2 234 aaPredicted RBP13.36□□□□□ -0.27
CLIP3-203ENST00000586457 ZDHHC15Q96MV8 337 aa13.36□□□□□ -0.27
CLIP3-203ENST00000586457 NOL10Q9BSC4 688 aaKnown RBP13.36□□□□□ -0.27
CLIP3-203ENST00000586457 GPR108Q9NPR9 543 aa13.36□□□□□ -0.27
CLIP3-203ENST00000586457 PCDHAC2Q9Y5I4 1007 aa13.36□□□□□ -0.27
CLIP3-203ENST00000586457 AOC2O75106 756 aa13.35□□□□□ -0.27
CLIP3-203ENST00000586457 GSTO1P78417 241 aa13.35□□□□□ -0.27
CLIP3-203ENST00000586457 SPDYE2Q495Y8 402 aa13.35□□□□□ -0.27
CLIP3-203ENST00000586457 TNNI3KQ59H18 835 aa13.35□□□□□ -0.27
CLIP3-203ENST00000586457 SPATA5Q8NB90 893 aa13.35□□□□□ -0.27
CLIP3-203ENST00000586457 ZBTB40Q9NUA8 1239 aa13.35□□□□□ -0.27
CLIP3-203ENST00000586457 RAI14Q9P0K7 980 aa13.35□□□□□ -0.27
CLIP3-203ENST00000586457 LRP2BPQ9P2M1 347 aa13.35□□□□□ -0.27
CLIP3-203ENST00000586457 ANGEL1Q9UNK9 670 aaKnown RBP13.35□□□□□ -0.27
CLIP3-203ENST00000586457 EXOC6BQ9Y2D4 811 aa13.35□□□□□ -0.27
CLIP3-203ENST00000586457 NOP58Q9Y2X3 529 aaKnown RBP13.35□□□□□ -0.27
CLIP3-203ENST00000586457 FPGT-TNNI3KV9GXZ4 949 aa13.35□□□□□ -0.27
CLIP3-203ENST00000586457 LDHCP07864 332 aa13.34□□□□□ -0.27
CLIP3-203ENST00000586457 IREB2P48200 963 aaKnown RBP13.34□□□□□ -0.27
CLIP3-203ENST00000586457 CTCFP49711 727 aaPredicted RBP13.34□□□□□ -0.27
CLIP3-203ENST00000586457 RASGRF1Q13972 1273 aa13.34□□□□□ -0.27
CLIP3-203ENST00000586457 GRIK5Q16478 980 aa13.34□□□□□ -0.27
CLIP3-203ENST00000586457 CLASRPQ8N2M8 674 aaKnown RBP13.34□□□□□ -0.27
CLIP3-203ENST00000586457 SLC10A4Q96EP9 437 aa13.34□□□□□ -0.27
CLIP3-203ENST00000586457 COL1A1P02452 1464 aaPredicted RBP13.34□□□□□ -0.27
CLIP3-203ENST00000586457 SALL1Q9NSC2 1324 aa13.34□□□□□ -0.27
CLIP3-203ENST00000586457 IFIT2P09913 472 aaKnown RBP13.33□□□□□ -0.28
CLIP3-203ENST00000586457 PRDX5P30044 214 aa13.33□□□□□ -0.28
CLIP3-203ENST00000586457 REM2Q8IYK8 340 aaPredicted RBP13.33□□□□□ -0.28
CLIP3-203ENST00000586457 CCDC8Q9H0W5 538 aaPredicted RBP13.33□□□□□ -0.28
CLIP3-203ENST00000586457 USP40Q9NVE5 1235 aa13.33□□□□□ -0.28
CLIP3-203ENST00000586457 CA12O43570 354 aa13.32□□□□□ -0.28
CLIP3-203ENST00000586457 RAB11FIP3O75154 756 aa13.32□□□□□ -0.28
CLIP3-203ENST00000586457 DIXDC1Q155Q3 683 aa13.32□□□□□ -0.28
CLIP3-203ENST00000586457 NBPF12Q5TAG4 269 aaPredicted RBP13.32□□□□□ -0.28
CLIP3-203ENST00000586457 C20orf194Q5TEA3 1177 aa13.32□□□□□ -0.28
CLIP3-203ENST00000586457 MOB2Q70IA6 237 aa13.32□□□□□ -0.28
CLIP3-203ENST00000586457 AACSQ86V21 672 aa13.32□□□□□ -0.28
CLIP3-203ENST00000586457 KIF1BPQ96EK5 621 aa13.32□□□□□ -0.28
CLIP3-203ENST00000586457 WBP1LQ9NX94 342 aa13.32□□□□□ -0.28
CLIP3-203ENST00000586457 HMG20BQ9P0W2 317 aa13.32□□□□□ -0.28
CLIP3-203ENST00000586457 PDS5AQ29RF7 1337 aaKnown RBP13.32□□□□□ -0.28
CLIP3-203ENST00000586457 MYH13Q9UKX3 1938 aa13.31□□□□□ -0.28
CLIP3-203ENST00000586457 ARID4AP29374 1257 aaPredicted RBP13.31□□□□□ -0.28
CLIP3-203ENST00000586457 CACNB3P54284 484 aa13.31□□□□□ -0.28
CLIP3-203ENST00000586457 KIF23Q02241 960 aaPredicted RBP13.31□□□□□ -0.28
CLIP3-203ENST00000586457 FKBP1CQ5VVH2 108 aa13.31□□□□□ -0.28
CLIP3-203ENST00000586457 APOBEC3HQ6NTF7 200 aaKnown RBP13.31□□□□□ -0.28
CLIP3-203ENST00000586457 DBNDD2Q9BQY9 259 aa13.31□□□□□ -0.28
CLIP3-203ENST00000586457 SNRKQ9NRH2 765 aa13.31□□□□□ -0.28
CLIP3-203ENST00000586457 ZBTB47Q9UFB7 747 aaPredicted RBP13.31□□□□□ -0.28
CLIP3-203ENST00000586457 UNCXA6NJT0 531 aa13.3□□□□□ -0.28
CLIP3-203ENST00000586457 ZBTB22O15209 634 aa13.3□□□□□ -0.28
CLIP3-203ENST00000586457 FOXN1O15353 648 aa13.3□□□□□ -0.28
CLIP3-203ENST00000586457 SLC10A3P09131 477 aa13.3□□□□□ -0.28
CLIP3-203ENST00000586457 TCP10Q12799 353 aa13.3□□□□□ -0.28
CLIP3-203ENST00000586457 DCAF15Q66K64 600 aa13.3□□□□□ -0.28
CLIP3-203ENST00000586457 TBC1D9Q6ZT07 1266 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms