RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 MAGEB6Q8N7X4 407 aa19.45■□□□□ 0.7
SS18-211ENST00000578954 OSBP2Q969R2 916 aa19.45■□□□□ 0.7
SS18-211ENST00000578954 KCNQ5Q9NR82 932 aa19.45■□□□□ 0.7
SS18-211ENST00000578954 RAI14Q9P0K7 980 aa19.45■□□□□ 0.7
SS18-211ENST00000578954 MAST3O60307 1309 aa19.45■□□□□ 0.7
SS18-211ENST00000578954 DICER1Q9UPY3 1922 aaKnown RBP19.45■□□□□ 0.7
SS18-211ENST00000578954 REC8O95072 547 aa19.44■□□□□ 0.7
SS18-211ENST00000578954 MECOMQ03112 1051 aa19.44■□□□□ 0.7
SS18-211ENST00000578954 GRIK5Q16478 980 aa19.44■□□□□ 0.7
SS18-211ENST00000578954 SLFNL1Q499Z3 407 aa19.44■□□□□ 0.7
SS18-211ENST00000578954 ARHGAP27Q6ZUM4 889 aa19.43■□□□□ 0.7
SS18-211ENST00000578954 ZNF589Q86UQ0 364 aaPredicted RBP19.43■□□□□ 0.7
SS18-211ENST00000578954 JDP2Q8WYK2 163 aa19.43■□□□□ 0.7
SS18-211ENST00000578954 SEC62Q99442 399 aaKnown RBP19.43■□□□□ 0.7
SS18-211ENST00000578954 CCDC171Q6TFL3 1326 aa19.43■□□□□ 0.7
SS18-211ENST00000578954 SBF1O95248 1867 aa19.43■□□□□ 0.7
SS18-211ENST00000578954 M0R2C6 588 aa19.42■□□□□ 0.7
SS18-211ENST00000578954 VIL1P09327 827 aaKnown RBP19.42■□□□□ 0.7
SS18-211ENST00000578954 LMNB1P20700 586 aa19.42■□□□□ 0.7
SS18-211ENST00000578954 NAA16Q6N069 864 aaPredicted RBP19.42■□□□□ 0.7
SS18-211ENST00000578954 DZIP1Q86YF9 867 aaKnown RBP19.42■□□□□ 0.7
SS18-211ENST00000578954 FAM163AQ96GL9 167 aaPredicted RBP19.42■□□□□ 0.7
SS18-211ENST00000578954 PUS7LQ9H0K6 701 aaKnown RBP19.42■□□□□ 0.7
SS18-211ENST00000578954 MYO3BQ8WXR4 1341 aa19.42■□□□□ 0.7
SS18-211ENST00000578954 FZD9O00144 591 aa19.41■□□□□ 0.7
SS18-211ENST00000578954 CYP7A1P22680 504 aa19.41■□□□□ 0.7
SS18-211ENST00000578954 MFAP1P55081 439 aaKnown RBP19.41■□□□□ 0.7
SS18-211ENST00000578954 GSTO1P78417 241 aa19.41■□□□□ 0.7
SS18-211ENST00000578954 ADGRA1Q86SQ6 560 aa19.41■□□□□ 0.7
SS18-211ENST00000578954 LSG1Q9H089 658 aaKnown RBP19.41■□□□□ 0.7
SS18-211ENST00000578954 GAKO14976 1311 aa19.41■□□□□ 0.7
SS18-211ENST00000578954 RSBN1LQ6PCB5 846 aaPredicted RBP19.4■□□□□ 0.7
SS18-211ENST00000578954 FBXW7Q969H0 707 aa19.4■□□□□ 0.7
SS18-211ENST00000578954 GMLQ99445 158 aa19.4■□□□□ 0.7
SS18-211ENST00000578954 MRIQ9BWK5 157 aa19.4■□□□□ 0.7
SS18-211ENST00000578954 GOLGB1Q14789 3259 aaKnown RBP19.4■□□□□ 0.7
SS18-211ENST00000578954 PSMD14O00487 310 aa19.39■□□□□ 0.69
SS18-211ENST00000578954 GPAA1O43292 621 aa19.39■□□□□ 0.69
SS18-211ENST00000578954 LDHCP07864 332 aa19.39■□□□□ 0.69
SS18-211ENST00000578954 HDLBPQ00341 1268 aaKnown RBP19.39■□□□□ 0.69
SS18-211ENST00000578954 CXCL9Q07325 125 aa19.39■□□□□ 0.69
SS18-211ENST00000578954 CCDC129Q6ZRS4 1044 aa19.39■□□□□ 0.69
SS18-211ENST00000578954 SLF2Q8IX21 1173 aa19.39■□□□□ 0.69
SS18-211ENST00000578954 RIOK1Q9BRS2 568 aaKnown RBP19.39■□□□□ 0.69
SS18-211ENST00000578954 MXD3Q9BW11 206 aa19.39■□□□□ 0.69
SS18-211ENST00000578954 USP26Q9BXU7 913 aa19.39■□□□□ 0.69
SS18-211ENST00000578954 MROH7-TTC4A0A0A0MT08 1334 aa19.39■□□□□ 0.69
SS18-211ENST00000578954 GRIN3BO60391 1043 aa19.38■□□□□ 0.69
SS18-211ENST00000578954 RAD17O75943 681 aa19.38■□□□□ 0.69
SS18-211ENST00000578954 CIAPIN1Q6FI81 312 aa19.38■□□□□ 0.69
SS18-211ENST00000578954 AGBL3Q8NEM8 1001 aa19.38■□□□□ 0.69
SS18-211ENST00000578954 UPF2Q9HAU5 1272 aaKnown RBP19.38■□□□□ 0.69
SS18-211ENST00000578954 ANO2Q9NQ90 1003 aa19.38■□□□□ 0.69
SS18-211ENST00000578954 MYH2Q9UKX2 1941 aa19.38■□□□□ 0.69
SS18-211ENST00000578954 FOXP2O15409 715 aa19.37■□□□□ 0.69
SS18-211ENST00000578954 PPP4CP60510 307 aa19.37■□□□□ 0.69
SS18-211ENST00000578954 TNIP1Q15025 636 aa19.37■□□□□ 0.69
SS18-211ENST00000578954 DIXDC1Q155Q3 683 aa19.37■□□□□ 0.69
SS18-211ENST00000578954 HHIPL2Q6UWX4 724 aa19.37■□□□□ 0.69
SS18-211ENST00000578954 KIAA1211Q6ZU35 1233 aa19.37■□□□□ 0.69
SS18-211ENST00000578954 CERS3Q8IU89 383 aa19.37■□□□□ 0.69
SS18-211ENST00000578954 MAP4K1Q92918 833 aa19.37■□□□□ 0.69
SS18-211ENST00000578954 AIDAQ96BJ3 306 aa19.37■□□□□ 0.69
SS18-211ENST00000578954 STRBPQ96SI9 672 aaKnown RBP19.37■□□□□ 0.69
SS18-211ENST00000578954 DSCC1Q9BVC3 393 aa19.37■□□□□ 0.69
SS18-211ENST00000578954 TTF2Q9UNY4 1162 aaKnown RBP19.37■□□□□ 0.69
SS18-211ENST00000578954 RPAP1Q9BWH6 1393 aaPredicted RBP19.36■□□□□ 0.69
SS18-211ENST00000578954 SRCAPQ6ZRS2 3230 aa19.36■□□□□ 0.69
SS18-211ENST00000578954 GPR75-ASB3A0A0A6YYF3 556 aa19.36■□□□□ 0.69
SS18-211ENST00000578954 MBD4O95243 580 aa19.36■□□□□ 0.69
SS18-211ENST00000578954 PTH1RQ03431 593 aa19.36■□□□□ 0.69
SS18-211ENST00000578954 GPR162Q16538 588 aa19.36■□□□□ 0.69
SS18-211ENST00000578954 LCORLQ8N3X6 602 aa19.36■□□□□ 0.69
SS18-211ENST00000578954 TBC1D32Q96NH3 1257 aa19.36■□□□□ 0.69
SS18-211ENST00000578954 TIAM2Q8IVF5 1701 aa19.35■□□□□ 0.69
SS18-211ENST00000578954 MAGEB6P1A0A0J9YX57 407 aa19.35■□□□□ 0.69
SS18-211ENST00000578954 HSPD1P10809 573 aaKnown RBP19.35■□□□□ 0.69
SS18-211ENST00000578954 GNAT2P19087 354 aa19.35■□□□□ 0.69
SS18-211ENST00000578954 RPS12P25398 132 aaKnown RBP19.35■□□□□ 0.69
SS18-211ENST00000578954 RBM25P49756 843 aaKnown RBP19.35■□□□□ 0.69
SS18-211ENST00000578954 MMP14P50281 582 aa19.35■□□□□ 0.69
SS18-211ENST00000578954 EIF6P56537 245 aaKnown RBP19.35■□□□□ 0.69
SS18-211ENST00000578954 MIGA1Q8NAN2 632 aa19.35■□□□□ 0.69
SS18-211ENST00000578954 DAGLAQ9Y4D2 1042 aa19.35■□□□□ 0.69
SS18-211ENST00000578954 ZMYM6O95789 1325 aa19.34■□□□□ 0.69
SS18-211ENST00000578954 VPS53Q5VIR6 699 aa19.34■□□□□ 0.69
SS18-211ENST00000578954 KIAA0825Q8IV33 1275 aa19.34■□□□□ 0.69
SS18-211ENST00000578954 C22orf23Q9BZE7 217 aa19.34■□□□□ 0.69
SS18-211ENST00000578954 ARMT1Q9H993 441 aa19.34■□□□□ 0.69
SS18-211ENST00000578954 TSHZ2Q9NRE2 1034 aa19.34■□□□□ 0.69
SS18-211ENST00000578954 SERPINA10Q9UK55 444 aa19.34■□□□□ 0.69
SS18-211ENST00000578954 ZNF541Q9H0D2 1346 aa19.33■□□□□ 0.69
SS18-211ENST00000578954 F8W031 263 aaPredicted RBP19.33■□□□□ 0.68
SS18-211ENST00000578954 BAG3O95817 575 aa19.33■□□□□ 0.68
SS18-211ENST00000578954 HSPA4P34932 840 aa19.33■□□□□ 0.68
SS18-211ENST00000578954 CRKP46108 304 aa19.33■□□□□ 0.68
SS18-211ENST00000578954 DYNLL1P63167 89 aaKnown RBP19.33■□□□□ 0.68
SS18-211ENST00000578954 ALX1Q15699 326 aa19.33■□□□□ 0.68
SS18-211ENST00000578954 TEKT1Q969V4 418 aa19.33■□□□□ 0.68
SS18-211ENST00000578954 IL17RAQ96F46 866 aa19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms