RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 TSEN2Q8NCE0 465 aaKnown RBP12.39□□□□□ -0.43
CIITA-208ENST00000572665 BCS1LQ9Y276 419 aa12.39□□□□□ -0.43
CIITA-208ENST00000572665 USP42Q9H9J4 1324 aaKnown RBP12.38□□□□□ -0.43
CIITA-208ENST00000572665 RNMTO43148 476 aaKnown RBP12.38□□□□□ -0.43
CIITA-208ENST00000572665 ATP2B4P23634 1241 aa12.38□□□□□ -0.43
CIITA-208ENST00000572665 PHLDB3Q6NSJ2 640 aa12.38□□□□□ -0.43
CIITA-208ENST00000572665 TTC5Q8N0Z6 440 aa12.38□□□□□ -0.43
CIITA-208ENST00000572665 KDF1Q8NAX2 398 aaPredicted RBP12.38□□□□□ -0.43
CIITA-208ENST00000572665 HPS1Q92902 700 aa12.38□□□□□ -0.43
CIITA-208ENST00000572665 ARHGEF10LQ9HCE6 1279 aa12.38□□□□□ -0.43
CIITA-208ENST00000572665 WWC3Q9ULE0 1092 aa12.38□□□□□ -0.43
CIITA-208ENST00000572665 MRC1P22897 1456 aa12.38□□□□□ -0.43
CIITA-208ENST00000572665 ARFGEF1Q9Y6D6 1849 aa12.37□□□□□ -0.43
CIITA-208ENST00000572665 A0A0G2JLW4 131 aa12.37□□□□□ -0.43
CIITA-208ENST00000572665 PATL2C9JE40 543 aaKnown RBP12.37□□□□□ -0.43
CIITA-208ENST00000572665 GAS2L2Q8NHY3 880 aa12.37□□□□□ -0.43
CIITA-208ENST00000572665 CFAP53Q96M91 514 aa12.37□□□□□ -0.43
CIITA-208ENST00000572665 HINFPQ9BQA5 517 aa12.37□□□□□ -0.43
CIITA-208ENST00000572665 RAB6BQ9NRW1 208 aa12.37□□□□□ -0.43
CIITA-208ENST00000572665 PIM2Q9P1W9 311 aa12.37□□□□□ -0.43
CIITA-208ENST00000572665 BRCA1P38398 1863 aaKnown RBP12.37□□□□□ -0.43
CIITA-208ENST00000572665 KIAA1551Q9HCM1 1747 aa12.37□□□□□ -0.43
CIITA-208ENST00000572665 BACH1O14867 736 aa12.36□□□□□ -0.43
CIITA-208ENST00000572665 PRMT3O60678 531 aa12.36□□□□□ -0.43
CIITA-208ENST00000572665 TEFQ10587 303 aa12.36□□□□□ -0.43
CIITA-208ENST00000572665 ARHGAP27Q6ZUM4 889 aa12.36□□□□□ -0.43
CIITA-208ENST00000572665 NPM2Q86SE8 214 aaKnown RBP12.36□□□□□ -0.43
CIITA-208ENST00000572665 ZNF526Q8TF50 670 aaPredicted RBP12.36□□□□□ -0.43
CIITA-208ENST00000572665 TEX13AQ9BXU3 409 aaPredicted RBP12.36□□□□□ -0.43
CIITA-208ENST00000572665 SERTAD1Q9UHV2 236 aa12.36□□□□□ -0.43
CIITA-208ENST00000572665 PDZRN3Q9UPQ7 1066 aa12.36□□□□□ -0.43
CIITA-208ENST00000572665 ADAMTS7Q9UKP4 1686 aa12.35□□□□□ -0.43
CIITA-208ENST00000572665 U2SURPO15042 1029 aaKnown RBP12.35□□□□□ -0.43
CIITA-208ENST00000572665 LGR5O75473 907 aa12.35□□□□□ -0.43
CIITA-208ENST00000572665 STARD3NLO95772 234 aa12.35□□□□□ -0.43
CIITA-208ENST00000572665 DPEP1P16444 411 aa12.35□□□□□ -0.43
CIITA-208ENST00000572665 OCLNQ16625 522 aa12.35□□□□□ -0.43
CIITA-208ENST00000572665 MTHFSDQ2M296 383 aaKnown RBP12.35□□□□□ -0.43
CIITA-208ENST00000572665 DALRD3Q5D0E6 543 aaKnown RBP12.35□□□□□ -0.43
CIITA-208ENST00000572665 INTS5Q6P9B9 1019 aaKnown RBP12.35□□□□□ -0.43
CIITA-208ENST00000572665 DNAJC10Q8IXB1 793 aa12.35□□□□□ -0.43
CIITA-208ENST00000572665 LGR6Q9HBX8 967 aa12.35□□□□□ -0.43
CIITA-208ENST00000572665 GOLGB1Q14789 3259 aaKnown RBP12.35□□□□□ -0.43
CIITA-208ENST00000572665 A0A087WZG4 1122 aa12.34□□□□□ -0.43
CIITA-208ENST00000572665 GNAT3A8MTJ3 354 aa12.34□□□□□ -0.43
CIITA-208ENST00000572665 IL2RAP01589 272 aa12.34□□□□□ -0.43
CIITA-208ENST00000572665 PTGIRP43119 386 aa12.34□□□□□ -0.43
CIITA-208ENST00000572665 XAGE2Q96GT9 111 aa12.34□□□□□ -0.43
CIITA-208ENST00000572665 PRIMPOLQ96LW4 560 aa12.34□□□□□ -0.43
CIITA-208ENST00000572665 AGBL1Q96MI9 1066 aa12.34□□□□□ -0.43
CIITA-208ENST00000572665 SRP68Q9UHB9 627 aaKnown RBP12.34□□□□□ -0.43
CIITA-208ENST00000572665 NARFQ9UHQ1 456 aa12.34□□□□□ -0.43
CIITA-208ENST00000572665 NUDCQ9Y266 331 aa12.34□□□□□ -0.43
CIITA-208ENST00000572665 SOS1Q07889 1333 aaPredicted RBP12.34□□□□□ -0.43
CIITA-208ENST00000572665 UBR2Q8IWV8 1755 aa12.33□□□□□ -0.44
CIITA-208ENST00000572665 COL15A1P39059 1388 aa12.33□□□□□ -0.44
CIITA-208ENST00000572665 CYP19A1P11511 503 aaPredicted RBP12.33□□□□□ -0.44
CIITA-208ENST00000572665 EPHA4P54764 986 aa12.33□□□□□ -0.44
CIITA-208ENST00000572665 SLC39A6Q13433 755 aa12.33□□□□□ -0.44
CIITA-208ENST00000572665 USPL1Q5W0Q7 1092 aa12.33□□□□□ -0.44
CIITA-208ENST00000572665 TNS4Q8IZW8 715 aa12.33□□□□□ -0.44
CIITA-208ENST00000572665 MEIOBQ8N635 442 aa12.33□□□□□ -0.44
CIITA-208ENST00000572665 CXXC1Q9P0U4 656 aaPredicted RBP12.33□□□□□ -0.44
CIITA-208ENST00000572665 KCPQ6ZWJ8 1503 aa12.32□□□□□ -0.44
CIITA-208ENST00000572665 A0A1W2PRU2 124 aa12.32□□□□□ -0.44
CIITA-208ENST00000572665 HSPA6P17066 643 aa12.32□□□□□ -0.44
CIITA-208ENST00000572665 WEE1P30291 646 aa12.32□□□□□ -0.44
CIITA-208ENST00000572665 TM4SF1P30408 202 aa12.32□□□□□ -0.44
CIITA-208ENST00000572665 C1orf216Q8TAB5 229 aa12.32□□□□□ -0.44
CIITA-208ENST00000572665 PODXL2Q9NZ53 605 aa12.32□□□□□ -0.44
CIITA-208ENST00000572665 POLRMTO00411 1230 aaKnown RBP12.31□□□□□ -0.44
CIITA-208ENST00000572665 RELBQ01201 579 aa12.31□□□□□ -0.44
CIITA-208ENST00000572665 CLN3Q13286 438 aa12.31□□□□□ -0.44
CIITA-208ENST00000572665 C16orf71Q8IYS4 520 aaPredicted RBP12.31□□□□□ -0.44
CIITA-208ENST00000572665 CNKSR1Q969H4 720 aa12.31□□□□□ -0.44
CIITA-208ENST00000572665 ESYT1Q9BSJ8 1104 aa12.31□□□□□ -0.44
CIITA-208ENST00000572665 HRH3Q9Y5N1 445 aa12.31□□□□□ -0.44
CIITA-208ENST00000572665 KDM2BQ8NHM5 1336 aa12.31□□□□□ -0.44
CIITA-208ENST00000572665 AFDNP55196 1824 aaKnown RBP12.3□□□□□ -0.44
CIITA-208ENST00000572665 COL3A1P02461 1466 aaPredicted RBP12.3□□□□□ -0.44
CIITA-208ENST00000572665 TOMM70O94826 608 aa12.3□□□□□ -0.44
CIITA-208ENST00000572665 CANXP27824 592 aaKnown RBP12.3□□□□□ -0.44
CIITA-208ENST00000572665 SMTNP53814 917 aa12.3□□□□□ -0.44
CIITA-208ENST00000572665 DDR1Q08345 913 aa12.3□□□□□ -0.44
CIITA-208ENST00000572665 CNGB1Q14028 1251 aaPredicted RBP12.3□□□□□ -0.44
CIITA-208ENST00000572665 ZNF790Q6PG37 636 aa12.3□□□□□ -0.44
CIITA-208ENST00000572665 FMNL2Q96PY5 1086 aa12.3□□□□□ -0.44
CIITA-208ENST00000572665 GNEQ9Y223 722 aaKnown RBP12.3□□□□□ -0.44
CIITA-208ENST00000572665 ZBTB1Q9Y2K1 713 aa12.3□□□□□ -0.44
CIITA-208ENST00000572665 NRXN2Q9P2S2 1712 aa12.29□□□□□ -0.44
CIITA-208ENST00000572665 SIPA1L3O60292 1781 aaPredicted RBP12.29□□□□□ -0.44
CIITA-208ENST00000572665 NEFMP07197 916 aa12.29□□□□□ -0.44
CIITA-208ENST00000572665 KCNA3P22001 575 aa12.29□□□□□ -0.44
CIITA-208ENST00000572665 MTFR1Q15390 333 aa12.29□□□□□ -0.44
CIITA-208ENST00000572665 RTF1Q92541 710 aaKnown RBP12.29□□□□□ -0.44
CIITA-208ENST00000572665 IVNS1ABPQ9Y6Y0 642 aa12.29□□□□□ -0.44
CIITA-208ENST00000572665 HEG1Q9ULI3 1381 aa12.29□□□□□ -0.44
CIITA-208ENST00000572665 DLEC1Q9Y238 1755 aa12.28□□□□□ -0.44
CIITA-208ENST00000572665 FAM187AA6NFU0 413 aa12.28□□□□□ -0.44
CIITA-208ENST00000572665 A6NJY4 79 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms