RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 WNT10BO00744 389 aa21.29■■□□□ 1
CLN3-217ENST00000565354 FKTNO75072 461 aa21.29■■□□□ 1
CLN3-217ENST00000565354 MKRN3Q13064 507 aaKnown RBP21.29■■□□□ 1
CLN3-217ENST00000565354 DACT2Q5SW24 774 aa21.29■■□□□ 1
CLN3-217ENST00000565354 C15orf52Q6ZUT6 534 aaKnown RBP21.29■■□□□ 1
CLN3-217ENST00000565354 TXNRD3Q86VQ6 643 aa21.29■■□□□ 1
CLN3-217ENST00000565354 OGFOD1Q8N543 542 aa21.29■■□□□ 1
CLN3-217ENST00000565354 VGLL2Q8N8G2 317 aa21.29■■□□□ 1
CLN3-217ENST00000565354 ATP2B3Q16720 1220 aa21.28■■□□□ 1
CLN3-217ENST00000565354 CAVIN4Q5BKX8 364 aa21.28■■□□□ 1
CLN3-217ENST00000565354 LPIN2Q92539 896 aa21.28■■□□□ 1
CLN3-217ENST00000565354 MXD3Q9BW11 206 aa21.28■■□□□ 1
CLN3-217ENST00000565354 AKAP2Q9Y2D5 859 aa21.28■■□□□ 1
CLN3-217ENST00000565354 HTTP42858 3142 aa21.28■■□□□ 1
CLN3-217ENST00000565354 MYO3BQ8WXR4 1341 aa21.28■■□□□ 1
CLN3-217ENST00000565354 MKI67P46013 3256 aaKnown RBP21.27■■□□□ 1
CLN3-217ENST00000565354 TFCP2Q12800 502 aa21.27■■□□□ 1
CLN3-217ENST00000565354 GCC1Q96CN9 775 aa21.27■■□□□ 1
CLN3-217ENST00000565354 R3HDMLQ9H3Y0 253 aa21.27■■□□□ 1
CLN3-217ENST00000565354 HIBADHP31937 336 aaKnown RBP21.26■□□□□ 0.99
CLN3-217ENST00000565354 GYG1P46976 350 aa21.26■□□□□ 0.99
CLN3-217ENST00000565354 HSP90AB4PQ58FF6 505 aa21.26■□□□□ 0.99
CLN3-217ENST00000565354 STRIP1Q5VSL9 837 aa21.26■□□□□ 0.99
CLN3-217ENST00000565354 ARMC9Q7Z3E5 817 aa21.26■□□□□ 0.99
CLN3-217ENST00000565354 CD209Q9NNX6 404 aa21.26■□□□□ 0.99
CLN3-217ENST00000565354 KIAA0100Q14667 2235 aaKnown RBP21.25■□□□□ 0.99
CLN3-217ENST00000565354 FRAT2O75474 233 aaPredicted RBP21.25■□□□□ 0.99
CLN3-217ENST00000565354 MMP14P50281 582 aa21.25■□□□□ 0.99
CLN3-217ENST00000565354 SASH1O94885 1247 aa21.24■□□□□ 0.99
CLN3-217ENST00000565354 FGFR2P21802 821 aa21.24■□□□□ 0.99
CLN3-217ENST00000565354 LDLRAD1Q5T700 205 aa21.24■□□□□ 0.99
CLN3-217ENST00000565354 SPRYD7Q5W111 196 aa21.24■□□□□ 0.99
CLN3-217ENST00000565354 ERC1Q8IUD2 1116 aa21.24■□□□□ 0.99
CLN3-217ENST00000565354 APOBEC3FQ8IUX4 373 aaKnown RBP21.24■□□□□ 0.99
CLN3-217ENST00000565354 EXOC6BQ9Y2D4 811 aa21.24■□□□□ 0.99
CLN3-217ENST00000565354 NOP58Q9Y2X3 529 aaKnown RBP21.24■□□□□ 0.99
CLN3-217ENST00000565354 CENPFP49454 3210 aa21.24■□□□□ 0.99
CLN3-217ENST00000565354 IRS2Q9Y4H2 1338 aa21.24■□□□□ 0.99
CLN3-217ENST00000565354 ALDH1A1P00352 501 aa21.23■□□□□ 0.99
CLN3-217ENST00000565354 PRKG1Q13976 671 aa21.23■□□□□ 0.99
CLN3-217ENST00000565354 FAM84BQ96KN1 310 aaPredicted RBP21.23■□□□□ 0.99
CLN3-217ENST00000565354 NEUROD6Q96NK8 337 aa21.23■□□□□ 0.99
CLN3-217ENST00000565354 LAMB1P07942 1786 aa21.23■□□□□ 0.99
CLN3-217ENST00000565354 CENPBP07199 599 aaPredicted RBP21.22■□□□□ 0.99
CLN3-217ENST00000565354 GTF2IP78347 998 aa21.22■□□□□ 0.99
CLN3-217ENST00000565354 AAMPQ13685 434 aa21.22■□□□□ 0.99
CLN3-217ENST00000565354 TTLL5Q6EMB2 1281 aa21.22■□□□□ 0.99
CLN3-217ENST00000565354 SIRT2Q8IXJ6 389 aa21.22■□□□□ 0.99
CLN3-217ENST00000565354 A0A1B0GUL7 405 aa21.21■□□□□ 0.99
CLN3-217ENST00000565354 APBB1O00213 710 aa21.21■□□□□ 0.99
CLN3-217ENST00000565354 IL1R1P14778 569 aa21.21■□□□□ 0.99
CLN3-217ENST00000565354 IRX6P78412 446 aaPredicted RBP21.21■□□□□ 0.99
CLN3-217ENST00000565354 GORABQ5T7V8 394 aa21.21■□□□□ 0.99
CLN3-217ENST00000565354 GNL3LQ9NVN8 582 aaKnown RBP21.21■□□□□ 0.99
CLN3-217ENST00000565354 ANGEL1Q9UNK9 670 aaKnown RBP21.21■□□□□ 0.99
CLN3-217ENST00000565354 RBBP6Q7Z6E9 1792 aaKnown RBP21.2■□□□□ 0.99
CLN3-217ENST00000565354 BCAMP50895 628 aa21.2■□□□□ 0.98
CLN3-217ENST00000565354 INHBEP58166 350 aa21.2■□□□□ 0.98
CLN3-217ENST00000565354 TIMM10P62072 90 aa21.2■□□□□ 0.98
CLN3-217ENST00000565354 FBXO33Q7Z6M2 555 aa21.2■□□□□ 0.98
CLN3-217ENST00000565354 EXOC6Q8TAG9 804 aa21.2■□□□□ 0.98
CLN3-217ENST00000565354 ZBED3Q96IU2 234 aaPredicted RBP21.2■□□□□ 0.98
CLN3-217ENST00000565354 IQSEC3Q9UPP2 1182 aaPredicted RBP21.2■□□□□ 0.98
CLN3-217ENST00000565354 ECM29Q5VYK3 1845 aa21.2■□□□□ 0.98
CLN3-217ENST00000565354 COL1A1P02452 1464 aaPredicted RBP21.2■□□□□ 0.98
CLN3-217ENST00000565354 MANSC4A6NHS7 340 aaPredicted RBP21.19■□□□□ 0.98
CLN3-217ENST00000565354 OTOP1Q7RTM1 612 aa21.19■□□□□ 0.98
CLN3-217ENST00000565354 KIAA0825Q8IV33 1275 aa21.19■□□□□ 0.98
CLN3-217ENST00000565354 BCL11AQ9H165 835 aa21.19■□□□□ 0.98
CLN3-217ENST00000565354 TRIM17Q9Y577 477 aa21.19■□□□□ 0.98
CLN3-217ENST00000565354 RAB11FIP3O75154 756 aa21.18■□□□□ 0.98
CLN3-217ENST00000565354 CHAF1AQ13111 956 aaPredicted RBP21.18■□□□□ 0.98
CLN3-217ENST00000565354 TNNI3KQ59H18 835 aa21.18■□□□□ 0.98
CLN3-217ENST00000565354 HABP4Q5JVS0 413 aaKnown RBP21.18■□□□□ 0.98
CLN3-217ENST00000565354 IFNL1Q8IU54 200 aa21.18■□□□□ 0.98
CLN3-217ENST00000565354 TDRD7Q8NHU6 1098 aaKnown RBP21.18■□□□□ 0.98
CLN3-217ENST00000565354 SLC10A4Q96EP9 437 aa21.18■□□□□ 0.98
CLN3-217ENST00000565354 XAGE2Q96GT9 111 aa21.18■□□□□ 0.98
CLN3-217ENST00000565354 GPR108Q9NPR9 543 aa21.18■□□□□ 0.98
CLN3-217ENST00000565354 JAG2Q9Y219 1238 aa21.18■□□□□ 0.98
CLN3-217ENST00000565354 PCDHB15Q9Y5E8 787 aa21.18■□□□□ 0.98
CLN3-217ENST00000565354 FPGT-TNNI3KV9GXZ4 949 aa21.18■□□□□ 0.98
CLN3-217ENST00000565354 BRCA2P51587 3418 aa21.17■□□□□ 0.98
CLN3-217ENST00000565354 POTEFA5A3E0 1075 aa21.17■□□□□ 0.98
CLN3-217ENST00000565354 ADORA1P30542 326 aa21.17■□□□□ 0.98
CLN3-217ENST00000565354 MAP3K11Q16584 847 aa21.17■□□□□ 0.98
CLN3-217ENST00000565354 RHPN1Q8TCX5 695 aa21.17■□□□□ 0.98
CLN3-217ENST00000565354 KIF1BPQ96EK5 621 aa21.17■□□□□ 0.98
CLN3-217ENST00000565354 FZD1Q9UP38 647 aa21.17■□□□□ 0.98
CLN3-217ENST00000565354 ARAP2Q8WZ64 1704 aa21.17■□□□□ 0.98
CLN3-217ENST00000565354 ZBTB48P10074 688 aaPredicted RBP21.16■□□□□ 0.98
CLN3-217ENST00000565354 DEFB129Q9H1M3 183 aa21.16■□□□□ 0.98
CLN3-217ENST00000565354 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.16■□□□□ 0.98
CLN3-217ENST00000565354 PHKA1P46020 1223 aa21.15■□□□□ 0.98
CLN3-217ENST00000565354 CCDC102BQ68D86 513 aa21.15■□□□□ 0.98
CLN3-217ENST00000565354 CLASRPQ8N2M8 674 aaKnown RBP21.15■□□□□ 0.98
CLN3-217ENST00000565354 WNK4Q96J92 1243 aa21.15■□□□□ 0.98
CLN3-217ENST00000565354 IL1RAPL2Q9NP60 686 aa21.15■□□□□ 0.98
CLN3-217ENST00000565354 FAM205AQ6ZU69 1335 aa21.14■□□□□ 0.97
CLN3-217ENST00000565354 IGF2BP3O00425 579 aaKnown RBP eCLIP21.14■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms