RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 SPDYE2Q495Y8 402 aa15.67■□□□□ 0.1
SNX1-209ENST00000559961 SPRYD7Q5W111 196 aa15.67■□□□□ 0.1
SNX1-209ENST00000559961 ANKRD13AQ8IZ07 590 aa15.67■□□□□ 0.1
SNX1-209ENST00000559961 KLHDC4Q8TBB5 520 aa15.67■□□□□ 0.1
SNX1-209ENST00000559961 TDRD3Q9H7E2 651 aaKnown RBP15.67■□□□□ 0.1
SNX1-209ENST00000559961 TCP10L2B9ZVM9 353 aa15.66■□□□□ 0.1
SNX1-209ENST00000559961 WDHD1O75717 1129 aaPredicted RBP15.66■□□□□ 0.1
SNX1-209ENST00000559961 BCAMP50895 628 aa15.66■□□□□ 0.1
SNX1-209ENST00000559961 MAP3K11Q16584 847 aa15.66■□□□□ 0.1
SNX1-209ENST00000559961 NBPF12Q5TAG4 269 aaPredicted RBP15.66■□□□□ 0.1
SNX1-209ENST00000559961 WDR66Q8TBY9 1149 aa15.66■□□□□ 0.1
SNX1-209ENST00000559961 KIF16BQ96L93 1317 aa15.66■□□□□ 0.1
SNX1-209ENST00000559961 GNAI3P08754 354 aa15.65■□□□□ 0.1
SNX1-209ENST00000559961 TRMT2AQ8IZ69 625 aaKnown RBP15.65■□□□□ 0.1
SNX1-209ENST00000559961 MRIQ9BWK5 157 aa15.65■□□□□ 0.1
SNX1-209ENST00000559961 SIL1Q9H173 461 aa15.65■□□□□ 0.1
SNX1-209ENST00000559961 PCDHAC2Q9Y5I4 1007 aa15.65■□□□□ 0.1
SNX1-209ENST00000559961 CSADQ9Y600 493 aa15.65■□□□□ 0.1
SNX1-209ENST00000559961 GPR25O00155 361 aa15.64■□□□□ 0.09
SNX1-209ENST00000559961 FKTNO75072 461 aa15.64■□□□□ 0.09
SNX1-209ENST00000559961 IL15P40933 162 aaPredicted RBP15.64■□□□□ 0.09
SNX1-209ENST00000559961 ARHGAP45Q92619 1136 aa15.64■□□□□ 0.09
SNX1-209ENST00000559961 WNK4Q96J92 1243 aa15.64■□□□□ 0.09
SNX1-209ENST00000559961 USP2O75604 605 aaPredicted RBP15.63■□□□□ 0.09
SNX1-209ENST00000559961 CIAO1O76071 339 aa15.63■□□□□ 0.09
SNX1-209ENST00000559961 ATP2B3Q16720 1220 aa15.63■□□□□ 0.09
SNX1-209ENST00000559961 NOM1Q5C9Z4 860 aaKnown RBP15.63■□□□□ 0.09
SNX1-209ENST00000559961 VGLL2Q8N8G2 317 aa15.63■□□□□ 0.09
SNX1-209ENST00000559961 ZNF296Q8WUU4 475 aaPredicted RBP15.63■□□□□ 0.09
SNX1-209ENST00000559961 FZD1Q9UP38 647 aa15.63■□□□□ 0.09
SNX1-209ENST00000559961 MAP3K9P80192 1104 aa15.62■□□□□ 0.09
SNX1-209ENST00000559961 ARHGEF6Q15052 776 aa15.62■□□□□ 0.09
SNX1-209ENST00000559961 HHIPL2Q6UWX4 724 aa15.62■□□□□ 0.09
SNX1-209ENST00000559961 IFNL1Q8IU54 200 aa15.62■□□□□ 0.09
SNX1-209ENST00000559961 ZGPATQ8N5A5 531 aaKnown RBP15.62■□□□□ 0.09
SNX1-209ENST00000559961 CLMNQ96JQ2 1002 aa15.62■□□□□ 0.09
SNX1-209ENST00000559961 LRRFIP2Q9Y608 721 aaKnown RBP15.62■□□□□ 0.09
SNX1-209ENST00000559961 FGFR2P21802 821 aa15.61■□□□□ 0.09
SNX1-209ENST00000559961 RARSP54136 660 aaKnown RBP15.61■□□□□ 0.09
SNX1-209ENST00000559961 DCAF15Q66K64 600 aa15.61■□□□□ 0.09
SNX1-209ENST00000559961 FRAT1Q92837 279 aaPredicted RBP15.61■□□□□ 0.09
SNX1-209ENST00000559961 ZDHHC15Q96MV8 337 aa15.61■□□□□ 0.09
SNX1-209ENST00000559961 TMEM39BQ9GZU3 492 aa15.61■□□□□ 0.09
SNX1-209ENST00000559961 ELP3Q9H9T3 547 aa15.61■□□□□ 0.09
SNX1-209ENST00000559961 DENND2AQ9ULE3 1009 aa15.61■□□□□ 0.09
SNX1-209ENST00000559961 AKAP2Q9Y2D5 859 aa15.61■□□□□ 0.09
SNX1-209ENST00000559961 SEMA3EO15041 775 aa15.6■□□□□ 0.09
SNX1-209ENST00000559961 LDHBP07195 334 aaKnown RBP15.6■□□□□ 0.09
SNX1-209ENST00000559961 RFX5P48382 616 aaPredicted RBP15.6■□□□□ 0.09
SNX1-209ENST00000559961 RGS19P49795 217 aa15.6■□□□□ 0.09
SNX1-209ENST00000559961 FKBP1CQ5VVH2 108 aa15.6■□□□□ 0.09
SNX1-209ENST00000559961 SLF2Q8IX21 1173 aa15.6■□□□□ 0.09
SNX1-209ENST00000559961 OPTNQ96CV9 577 aa15.6■□□□□ 0.09
SNX1-209ENST00000559961 CFHR5Q9BXR6 569 aa15.6■□□□□ 0.09
SNX1-209ENST00000559961 CASP8AP2Q9UKL3 1982 aa15.59■□□□□ 0.09
SNX1-209ENST00000559961 GTF2A2P52657 109 aa15.59■□□□□ 0.09
SNX1-209ENST00000559961 GORABQ5T7V8 394 aa15.59■□□□□ 0.09
SNX1-209ENST00000559961 FAM83AQ86UY5 434 aa15.59■□□□□ 0.09
SNX1-209ENST00000559961 AKAP11Q9UKA4 1901 aa15.58■□□□□ 0.09
SNX1-209ENST00000559961 SRGAP3O43295 1099 aa15.58■□□□□ 0.08
SNX1-209ENST00000559961 SPTY2D1Q68D10 685 aaPredicted RBP15.58■□□□□ 0.08
SNX1-209ENST00000559961 INTS3Q68E01 1043 aaKnown RBP15.58■□□□□ 0.08
SNX1-209ENST00000559961 FBXO46Q6PJ61 603 aaPredicted RBP15.58■□□□□ 0.08
SNX1-209ENST00000559961 ATG9AQ7Z3C6 839 aa15.58■□□□□ 0.08
SNX1-209ENST00000559961 ERO1AQ96HE7 468 aa15.58■□□□□ 0.08
SNX1-209ENST00000559961 COPRSQ9NQ92 184 aa15.58■□□□□ 0.08
SNX1-209ENST00000559961 GNAI2P04899 355 aa15.57■□□□□ 0.08
SNX1-209ENST00000559961 CACNB3P54284 484 aa15.57■□□□□ 0.08
SNX1-209ENST00000559961 G3BP1Q13283 466 aaKnown RBP eCLIP15.57■□□□□ 0.08
SNX1-209ENST00000559961 MEIS3Q99687 375 aa15.57■□□□□ 0.08
SNX1-209ENST00000559961 ZFYVE28Q9HCC9 887 aa15.57■□□□□ 0.08
SNX1-209ENST00000559961 HPS5Q9UPZ3 1129 aa15.57■□□□□ 0.08
SNX1-209ENST00000559961 MVPQ14764 893 aaKnown RBP15.56■□□□□ 0.08
SNX1-209ENST00000559961 GRIK5Q16478 980 aa15.56■□□□□ 0.08
SNX1-209ENST00000559961 APOBEC3HQ6NTF7 200 aaKnown RBP15.56■□□□□ 0.08
SNX1-209ENST00000559961 ATF7IPQ6VMQ6 1270 aa15.56■□□□□ 0.08
SNX1-209ENST00000559961 DZIP1Q86YF9 867 aaKnown RBP15.56■□□□□ 0.08
SNX1-209ENST00000559961 OTUD5Q96G74 571 aa15.56■□□□□ 0.08
SNX1-209ENST00000559961 TEPSINQ96N21 525 aa15.56■□□□□ 0.08
SNX1-209ENST00000559961 NEUROD6Q96NK8 337 aa15.56■□□□□ 0.08
SNX1-209ENST00000559961 WRNIP1Q96S55 665 aa15.56■□□□□ 0.08
SNX1-209ENST00000559961 ZNF341Q9BYN7 854 aa15.56■□□□□ 0.08
SNX1-209ENST00000559961 USP40Q9NVE5 1235 aa15.56■□□□□ 0.08
SNX1-209ENST00000559961 PA2G4Q9UQ80 394 aaKnown RBP15.56■□□□□ 0.08
SNX1-209ENST00000559961 TRIM17Q9Y577 477 aa15.56■□□□□ 0.08
SNX1-209ENST00000559961 AOX1Q06278 1338 aa15.56■□□□□ 0.08
SNX1-209ENST00000559961 CCL15-CCL14A0A0B4J2E2 113 aa15.55■□□□□ 0.08
SNX1-209ENST00000559961 CETPP11597 493 aa15.55■□□□□ 0.08
SNX1-209ENST00000559961 SOX10P56693 466 aa15.55■□□□□ 0.08
SNX1-209ENST00000559961 VGLL4Q14135 290 aa15.55■□□□□ 0.08
SNX1-209ENST00000559961 CCL15Q16663 113 aa15.55■□□□□ 0.08
SNX1-209ENST00000559961 ERO1BQ86YB8 467 aa15.55■□□□□ 0.08
SNX1-209ENST00000559961 FAM151AQ8WW52 585 aa15.55■□□□□ 0.08
SNX1-209ENST00000559961 ABCF2Q9UG63 623 aa15.55■□□□□ 0.08
SNX1-209ENST00000559961 IGF2BP3O00425 579 aaKnown RBP eCLIP15.54■□□□□ 0.08
SNX1-209ENST00000559961 HNRNPUQ00839 825 aaKnown RBP eCLIP15.54■□□□□ 0.08
SNX1-209ENST00000559961 SP3Q02447 781 aa15.54■□□□□ 0.08
SNX1-209ENST00000559961 SNAPC2Q13487 334 aa15.54■□□□□ 0.08
SNX1-209ENST00000559961 KIF22Q14807 665 aa15.54■□□□□ 0.08
SNX1-209ENST00000559961 ZKSCAN2Q63HK3 967 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms