RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 ZNF408Q9H9D4 720 aa12.67□□□□□ -0.38
USP3-207ENST00000558218 FAM205AQ6ZU69 1335 aa12.66□□□□□ -0.38
USP3-207ENST00000558218 KIF16BQ96L93 1317 aa12.66□□□□□ -0.38
USP3-207ENST00000558218 CA12O43570 354 aa12.66□□□□□ -0.38
USP3-207ENST00000558218 PLIN1O60240 522 aa12.66□□□□□ -0.38
USP3-207ENST00000558218 PDE8BO95263 885 aa12.66□□□□□ -0.38
USP3-207ENST00000558218 HIBADHP31937 336 aaKnown RBP12.66□□□□□ -0.38
USP3-207ENST00000558218 HUNKP57058 714 aa12.66□□□□□ -0.38
USP3-207ENST00000558218 NOGQ13253 232 aa12.66□□□□□ -0.38
USP3-207ENST00000558218 PAXIP1Q6ZW49 1069 aaPredicted RBP12.66□□□□□ -0.38
USP3-207ENST00000558218 FBXW7Q969H0 707 aa12.66□□□□□ -0.38
USP3-207ENST00000558218 ZBED3Q96IU2 234 aaPredicted RBP12.66□□□□□ -0.38
USP3-207ENST00000558218 TMEM121BQ9BXQ6 578 aaPredicted RBP12.66□□□□□ -0.38
USP3-207ENST00000558218 ADM5C9JUS6 153 aa12.65□□□□□ -0.38
USP3-207ENST00000558218 SNAP23O00161 211 aa12.65□□□□□ -0.38
USP3-207ENST00000558218 FOXN1O15353 648 aa12.65□□□□□ -0.38
USP3-207ENST00000558218 UBTFL1P0CB47 393 aaPredicted RBP12.65□□□□□ -0.38
USP3-207ENST00000558218 NBPF9Q3BBW0 867 aa12.65□□□□□ -0.38
USP3-207ENST00000558218 CAVIN4Q5BKX8 364 aa12.65□□□□□ -0.38
USP3-207ENST00000558218 INTS3Q68E01 1043 aaKnown RBP12.65□□□□□ -0.38
USP3-207ENST00000558218 RGMBQ6NW40 437 aa12.65□□□□□ -0.38
USP3-207ENST00000558218 TMEM92Q6UXU6 159 aa12.65□□□□□ -0.38
USP3-207ENST00000558218 KIAA0825Q8IV33 1275 aa12.65□□□□□ -0.38
USP3-207ENST00000558218 CDCA5Q96FF9 252 aa12.65□□□□□ -0.38
USP3-207ENST00000558218 FAM84BQ96KN1 310 aaPredicted RBP12.65□□□□□ -0.38
USP3-207ENST00000558218 MXD3Q9BW11 206 aa12.65□□□□□ -0.38
USP3-207ENST00000558218 PUS3Q9BZE2 481 aaKnown RBP12.65□□□□□ -0.38
USP3-207ENST00000558218 DLGAP5Q15398 846 aa12.64□□□□□ -0.39
USP3-207ENST00000558218 METTL24Q5JXM2 366 aa12.64□□□□□ -0.39
USP3-207ENST00000558218 LCE2DQ5TA82 110 aaPredicted RBP12.64□□□□□ -0.39
USP3-207ENST00000558218 FBXO33Q7Z6M2 555 aa12.64□□□□□ -0.39
USP3-207ENST00000558218 APOBEC3FQ8IUX4 373 aaKnown RBP12.64□□□□□ -0.39
USP3-207ENST00000558218 ZNF646O15015 1829 aaPredicted RBP12.64□□□□□ -0.39
USP3-207ENST00000558218 A0A1B0GUL6 1792 aa12.64□□□□□ -0.39
USP3-207ENST00000558218 ASTN2O75129 1339 aaPredicted RBP12.63□□□□□ -0.39
USP3-207ENST00000558218 EYA2O00167 538 aa12.63□□□□□ -0.39
USP3-207ENST00000558218 MYO1BO43795 1136 aa12.63□□□□□ -0.39
USP3-207ENST00000558218 CIAO1O76071 339 aa12.63□□□□□ -0.39
USP3-207ENST00000558218 GNAI3P08754 354 aa12.63□□□□□ -0.39
USP3-207ENST00000558218 NF2P35240 595 aa12.63□□□□□ -0.39
USP3-207ENST00000558218 RFX5P48382 616 aaPredicted RBP12.63□□□□□ -0.39
USP3-207ENST00000558218 VPS37DQ86XT2 251 aa12.63□□□□□ -0.39
USP3-207ENST00000558218 TNS4Q8IZW8 715 aa12.63□□□□□ -0.39
USP3-207ENST00000558218 CERS5Q8N5B7 392 aa12.63□□□□□ -0.39
USP3-207ENST00000558218 VGLL2Q8N8G2 317 aa12.63□□□□□ -0.39
USP3-207ENST00000558218 TBC1D22AQ8WUA7 517 aa12.63□□□□□ -0.39
USP3-207ENST00000558218 MRIQ9BWK5 157 aa12.63□□□□□ -0.39
USP3-207ENST00000558218 THSD7BQ9C0I4 1608 aa12.62□□□□□ -0.39
USP3-207ENST00000558218 IFIT1P09914 478 aaKnown RBP12.62□□□□□ -0.39
USP3-207ENST00000558218 GYG1P46976 350 aa12.62□□□□□ -0.39
USP3-207ENST00000558218 HDLBPQ00341 1268 aaKnown RBP12.62□□□□□ -0.39
USP3-207ENST00000558218 PTPN12Q05209 780 aaKnown RBP12.62□□□□□ -0.39
USP3-207ENST00000558218 PUM3Q15397 648 aaKnown RBP12.62□□□□□ -0.39
USP3-207ENST00000558218 LRRC24Q50LG9 513 aa12.62□□□□□ -0.39
USP3-207ENST00000558218 DLK2Q6UY11 383 aa12.62□□□□□ -0.39
USP3-207ENST00000558218 SUGT1Q9Y2Z0 365 aa12.62□□□□□ -0.39
USP3-207ENST00000558218 PPP2R3BQ9Y5P8 575 aa12.62□□□□□ -0.39
USP3-207ENST00000558218 UNCXA6NJT0 531 aa12.61□□□□□ -0.39
USP3-207ENST00000558218 FAM155AB1AL88 458 aaPredicted RBP12.61□□□□□ -0.39
USP3-207ENST00000558218 AOC2O75106 756 aa12.61□□□□□ -0.39
USP3-207ENST00000558218 FGFR2P21802 821 aa12.61□□□□□ -0.39
USP3-207ENST00000558218 ZNF157P51786 506 aaPredicted RBP12.61□□□□□ -0.39
USP3-207ENST00000558218 GRM1Q13255 1194 aa12.61□□□□□ -0.39
USP3-207ENST00000558218 MFSD14BQ5SR56 506 aa12.61□□□□□ -0.39
USP3-207ENST00000558218 ATF7IPQ6VMQ6 1270 aa12.61□□□□□ -0.39
USP3-207ENST00000558218 LPIN2Q92539 896 aa12.61□□□□□ -0.39
USP3-207ENST00000558218 SERPINA10Q9UK55 444 aa12.61□□□□□ -0.39
USP3-207ENST00000558218 COL1A1P02452 1464 aaPredicted RBP12.6□□□□□ -0.39
USP3-207ENST00000558218 HSPA8P11142 646 aaKnown RBP12.6□□□□□ -0.39
USP3-207ENST00000558218 LBX1P52954 281 aa12.6□□□□□ -0.39
USP3-207ENST00000558218 HNRNPUQ00839 825 aaKnown RBP eCLIP12.6□□□□□ -0.39
USP3-207ENST00000558218 CFAP100Q494V2 611 aa12.6□□□□□ -0.39
USP3-207ENST00000558218 COPRSQ9NQ92 184 aa12.6□□□□□ -0.39
USP3-207ENST00000558218 CEP126Q9P2H0 1117 aa12.6□□□□□ -0.39
USP3-207ENST00000558218 PCNTO95613 3336 aa12.59□□□□□ -0.39
USP3-207ENST00000558218 FRAT2O75474 233 aaPredicted RBP12.59□□□□□ -0.39
USP3-207ENST00000558218 SLC5A1P13866 664 aa12.59□□□□□ -0.39
USP3-207ENST00000558218 IL15P40933 162 aaPredicted RBP12.59□□□□□ -0.39
USP3-207ENST00000558218 MTX1Q13505 466 aa12.59□□□□□ -0.39
USP3-207ENST00000558218 SUPT20HL1Q3ZLR7 823 aa12.59□□□□□ -0.39
USP3-207ENST00000558218 ATG9AQ7Z3C6 839 aa12.59□□□□□ -0.39
USP3-207ENST00000558218 ARMC9Q7Z3E5 817 aa12.59□□□□□ -0.39
USP3-207ENST00000558218 KLHDC4Q8TBB5 520 aa12.59□□□□□ -0.39
USP3-207ENST00000558218 PRMT6Q96LA8 375 aaPredicted RBP12.59□□□□□ -0.39
USP3-207ENST00000558218 DEFB129Q9H1M3 183 aa12.59□□□□□ -0.39
USP3-207ENST00000558218 LRRFIP2Q9Y608 721 aaKnown RBP12.59□□□□□ -0.39
USP3-207ENST00000558218 PAPPA2Q9BXP8 1791 aa12.58□□□□□ -0.39
USP3-207ENST00000558218 SLC10A3P09131 477 aa12.58□□□□□ -0.4
USP3-207ENST00000558218 TRIM27P14373 513 aa12.58□□□□□ -0.4
USP3-207ENST00000558218 TNFAIP1Q13829 316 aa12.58□□□□□ -0.4
USP3-207ENST00000558218 MAP3K11Q16584 847 aa12.58□□□□□ -0.4
USP3-207ENST00000558218 ZKSCAN2Q63HK3 967 aa12.58□□□□□ -0.4
USP3-207ENST00000558218 WDR66Q8TBY9 1149 aa12.58□□□□□ -0.4
USP3-207ENST00000558218 GNL3LQ9NVN8 582 aaKnown RBP12.58□□□□□ -0.4
USP3-207ENST00000558218 SAGE1Q9NXZ1 904 aa12.58□□□□□ -0.4
USP3-207ENST00000558218 TTF2Q9UNY4 1162 aaKnown RBP12.58□□□□□ -0.4
USP3-207ENST00000558218 F8W031 263 aaPredicted RBP12.57□□□□□ -0.4
USP3-207ENST00000558218 SEMA3EO15041 775 aa12.57□□□□□ -0.4
USP3-207ENST00000558218 PPP1R12BO60237 982 aaPredicted RBP12.57□□□□□ -0.4
USP3-207ENST00000558218 ST18O60284 1047 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms