RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 ANGEL1Q9UNK9 670 aaKnown RBP12.92□□□□□ -0.34
SCFD1-220ENST00000556486 SZT2Q5T011 3432 aa12.91□□□□□ -0.34
SCFD1-220ENST00000556486 ZNF609O15014 1411 aa12.91□□□□□ -0.34
SCFD1-220ENST00000556486 WNT10BO00744 389 aa12.91□□□□□ -0.34
SCFD1-220ENST00000556486 NF2P35240 595 aa12.91□□□□□ -0.34
SCFD1-220ENST00000556486 CAP1Q01518 475 aa12.91□□□□□ -0.34
SCFD1-220ENST00000556486 SPRYD7Q5W111 196 aa12.91□□□□□ -0.34
SCFD1-220ENST00000556486 CLMNQ96JQ2 1002 aa12.91□□□□□ -0.34
SCFD1-220ENST00000556486 MYD88Q99836 296 aa12.91□□□□□ -0.34
SCFD1-220ENST00000556486 XDHP47989 1333 aa12.9□□□□□ -0.34
SCFD1-220ENST00000556486 POTEMA6NI47 508 aa12.9□□□□□ -0.34
SCFD1-220ENST00000556486 IGF2BP3O00425 579 aaKnown RBP eCLIP12.9□□□□□ -0.34
SCFD1-220ENST00000556486 HSP90B1P14625 803 aaKnown RBP12.9□□□□□ -0.34
SCFD1-220ENST00000556486 GNAI1P63096 354 aa12.9□□□□□ -0.34
SCFD1-220ENST00000556486 ARMC9Q7Z3E5 817 aa12.9□□□□□ -0.34
SCFD1-220ENST00000556486 ZBTB38Q8NAP3 1195 aaPredicted RBP12.9□□□□□ -0.34
SCFD1-220ENST00000556486 CHMP4AQ9BY43 222 aa12.9□□□□□ -0.34
SCFD1-220ENST00000556486 CCDC152Q4G0S7 254 aa12.89□□□□□ -0.35
SCFD1-220ENST00000556486 NOM1Q5C9Z4 860 aaKnown RBP12.89□□□□□ -0.35
SCFD1-220ENST00000556486 DACT2Q5SW24 774 aa12.89□□□□□ -0.35
SCFD1-220ENST00000556486 POTEGQ6S5H5 508 aa12.89□□□□□ -0.35
SCFD1-220ENST00000556486 RIC3Q7Z5B4 369 aa12.89□□□□□ -0.35
SCFD1-220ENST00000556486 TXNRD3Q86VQ6 643 aa12.89□□□□□ -0.35
SCFD1-220ENST00000556486 KIAA0825Q8IV33 1275 aa12.89□□□□□ -0.35
SCFD1-220ENST00000556486 ANKRD18AQ8IVF6 992 aa12.89□□□□□ -0.35
SCFD1-220ENST00000556486 PHAXQ9H814 394 aaKnown RBP12.89□□□□□ -0.35
SCFD1-220ENST00000556486 KIAA0100Q14667 2235 aaKnown RBP12.89□□□□□ -0.35
SCFD1-220ENST00000556486 APAF1O14727 1248 aa12.88□□□□□ -0.35
SCFD1-220ENST00000556486 KLRK1P26718 216 aa12.88□□□□□ -0.35
SCFD1-220ENST00000556486 PODNQ7Z5L7 613 aa12.88□□□□□ -0.35
SCFD1-220ENST00000556486 OGFOD1Q8N543 542 aa12.88□□□□□ -0.35
SCFD1-220ENST00000556486 CCDC191Q8NCU4 936 aa12.88□□□□□ -0.35
SCFD1-220ENST00000556486 SLC10A4Q96EP9 437 aa12.88□□□□□ -0.35
SCFD1-220ENST00000556486 PTPN22Q9Y2R2 807 aa12.88□□□□□ -0.35
SCFD1-220ENST00000556486 PCDHAC2Q9Y5I4 1007 aa12.88□□□□□ -0.35
SCFD1-220ENST00000556486 SSC5DA1L4H1 1573 aa12.88□□□□□ -0.35
SCFD1-220ENST00000556486 ZSWIM8A7E2V4 1837 aa12.88□□□□□ -0.35
SCFD1-220ENST00000556486 PCCAP05165 728 aaPredicted RBP12.87□□□□□ -0.35
SCFD1-220ENST00000556486 HOXB3P14651 431 aaPredicted RBP12.87□□□□□ -0.35
SCFD1-220ENST00000556486 ATP2B4P23634 1241 aa12.87□□□□□ -0.35
SCFD1-220ENST00000556486 CRHR2Q13324 411 aa12.87□□□□□ -0.35
SCFD1-220ENST00000556486 LDLRAD1Q5T700 205 aa12.87□□□□□ -0.35
SCFD1-220ENST00000556486 CFHR5Q9BXR6 569 aa12.87□□□□□ -0.35
SCFD1-220ENST00000556486 A6NJR5 290 aa12.86□□□□□ -0.35
SCFD1-220ENST00000556486 ELL2O00472 640 aaPredicted RBP12.86□□□□□ -0.35
SCFD1-220ENST00000556486 PDE8AO60658 829 aa12.86□□□□□ -0.35
SCFD1-220ENST00000556486 INTS3Q68E01 1043 aaKnown RBP12.86□□□□□ -0.35
SCFD1-220ENST00000556486 DDX12PQ92771 950 aa12.86□□□□□ -0.35
SCFD1-220ENST00000556486 WNK4Q96J92 1243 aa12.86□□□□□ -0.35
SCFD1-220ENST00000556486 PCMTD1Q96MG8 357 aaPredicted RBP12.86□□□□□ -0.35
SCFD1-220ENST00000556486 EFCC1Q9HA90 598 aa12.86□□□□□ -0.35
SCFD1-220ENST00000556486 OTOFQ9HC10 1997 aa12.85□□□□□ -0.35
SCFD1-220ENST00000556486 MED23Q9ULK4 1368 aa12.85□□□□□ -0.35
SCFD1-220ENST00000556486 CLRN2A0PK11 232 aa12.85□□□□□ -0.35
SCFD1-220ENST00000556486 MANSC4A6NHS7 340 aaPredicted RBP12.85□□□□□ -0.35
SCFD1-220ENST00000556486 F8W031 263 aaPredicted RBP12.85□□□□□ -0.35
SCFD1-220ENST00000556486 ALDH1A1P00352 501 aa12.85□□□□□ -0.35
SCFD1-220ENST00000556486 GJA5P36382 358 aa12.85□□□□□ -0.35
SCFD1-220ENST00000556486 CCDC27Q2M243 656 aa12.85□□□□□ -0.35
SCFD1-220ENST00000556486 APOBEC3FQ8IUX4 373 aaKnown RBP12.85□□□□□ -0.35
SCFD1-220ENST00000556486 C8orf58Q8NAV2 365 aa12.85□□□□□ -0.35
SCFD1-220ENST00000556486 METTL22Q9BUU2 404 aaPredicted RBP12.85□□□□□ -0.35
SCFD1-220ENST00000556486 GREM2Q9H772 168 aa12.85□□□□□ -0.35
SCFD1-220ENST00000556486 MYH3P11055 1940 aa12.85□□□□□ -0.35
SCFD1-220ENST00000556486 AOX1Q06278 1338 aa12.85□□□□□ -0.35
SCFD1-220ENST00000556486 LAMB1P07942 1786 aa12.84□□□□□ -0.35
SCFD1-220ENST00000556486 H0YGN5 161 aa12.84□□□□□ -0.35
SCFD1-220ENST00000556486 DDX58O95786 925 aaKnown RBP12.84□□□□□ -0.35
SCFD1-220ENST00000556486 MS4A1P11836 297 aa12.84□□□□□ -0.35
SCFD1-220ENST00000556486 CCT4P50991 539 aaKnown RBP12.84□□□□□ -0.35
SCFD1-220ENST00000556486 GTF2IP78347 998 aa12.84□□□□□ -0.35
SCFD1-220ENST00000556486 CCDC30Q5VVM6 783 aa12.84□□□□□ -0.35
SCFD1-220ENST00000556486 TTLL5Q6EMB2 1281 aa12.84□□□□□ -0.35
SCFD1-220ENST00000556486 ERO1AQ96HE7 468 aa12.84□□□□□ -0.35
SCFD1-220ENST00000556486 DEFB129Q9H1M3 183 aa12.84□□□□□ -0.35
SCFD1-220ENST00000556486 CWC25Q9NXE8 425 aaPredicted RBP12.84□□□□□ -0.35
SCFD1-220ENST00000556486 MINPP1Q9UNW1 487 aa12.84□□□□□ -0.35
SCFD1-220ENST00000556486 TRIOBPQ9H2D6 2365 aa12.84□□□□□ -0.35
SCFD1-220ENST00000556486 ECM29Q5VYK3 1845 aa12.83□□□□□ -0.35
SCFD1-220ENST00000556486 CEP290O15078 2479 aa12.83□□□□□ -0.36
SCFD1-220ENST00000556486 STRIP1Q5VSL9 837 aa12.83□□□□□ -0.36
SCFD1-220ENST00000556486 OXER1Q8TDS5 423 aa12.83□□□□□ -0.36
SCFD1-220ENST00000556486 CLUAP1Q96AJ1 413 aa12.83□□□□□ -0.36
SCFD1-220ENST00000556486 ARMC5Q96C12 935 aa12.83□□□□□ -0.36
SCFD1-220ENST00000556486 PTPN18Q99952 460 aa12.83□□□□□ -0.36
SCFD1-220ENST00000556486 JAG2Q9Y219 1238 aa12.83□□□□□ -0.36
SCFD1-220ENST00000556486 PTCH2Q9Y6C5 1203 aa12.83□□□□□ -0.36
SCFD1-220ENST00000556486 SNAP23O00161 211 aa12.82□□□□□ -0.36
SCFD1-220ENST00000556486 TRAK2O60296 914 aa12.82□□□□□ -0.36
SCFD1-220ENST00000556486 CTSWP56202 376 aa12.82□□□□□ -0.36
SCFD1-220ENST00000556486 SP3Q02447 781 aa12.82□□□□□ -0.36
SCFD1-220ENST00000556486 PTGDRQ13258 359 aa12.82□□□□□ -0.36
SCFD1-220ENST00000556486 SLC4A8Q2Y0W8 1093 aa12.82□□□□□ -0.36
SCFD1-220ENST00000556486 NBPF12Q5TAG4 269 aaPredicted RBP12.82□□□□□ -0.36
SCFD1-220ENST00000556486 KSR2Q6VAB6 950 aa12.82□□□□□ -0.36
SCFD1-220ENST00000556486 ZBED3Q96IU2 234 aaPredicted RBP12.82□□□□□ -0.36
SCFD1-220ENST00000556486 CDC5LQ99459 802 aaKnown RBP12.82□□□□□ -0.36
SCFD1-220ENST00000556486 ELP3Q9H9T3 547 aa12.82□□□□□ -0.36
SCFD1-220ENST00000556486 VEZTQ9HBM0 779 aa12.82□□□□□ -0.36
SCFD1-220ENST00000556486 MYO3BQ8WXR4 1341 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms