RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 ZBTB22O15209 634 aa16.93■□□□□ 0.3
SHMT2-219ENST00000555563 MYO1BO43795 1136 aa16.93■□□□□ 0.3
SHMT2-219ENST00000555563 TNNI3KQ59H18 835 aa16.93■□□□□ 0.3
SHMT2-219ENST00000555563 PRAMEF18Q5VWM3 479 aa16.93■□□□□ 0.3
SHMT2-219ENST00000555563 PAXIP1Q6ZW49 1069 aaPredicted RBP16.93■□□□□ 0.3
SHMT2-219ENST00000555563 CHMP4BQ9H444 224 aaKnown RBP16.93■□□□□ 0.3
SHMT2-219ENST00000555563 SUGT1Q9Y2Z0 365 aa16.93■□□□□ 0.3
SHMT2-219ENST00000555563 FPGT-TNNI3KV9GXZ4 949 aa16.93■□□□□ 0.3
SHMT2-219ENST00000555563 MAST3O60307 1309 aa16.93■□□□□ 0.3
SHMT2-219ENST00000555563 FOXN1O15353 648 aa16.92■□□□□ 0.3
SHMT2-219ENST00000555563 PRDX5P30044 214 aa16.92■□□□□ 0.3
SHMT2-219ENST00000555563 TEKT1Q969V4 418 aa16.92■□□□□ 0.3
SHMT2-219ENST00000555563 CAPNS2Q96L46 248 aa16.92■□□□□ 0.3
SHMT2-219ENST00000555563 VEZTQ9HBM0 779 aa16.92■□□□□ 0.3
SHMT2-219ENST00000555563 EXOC6BQ9Y2D4 811 aa16.92■□□□□ 0.3
SHMT2-219ENST00000555563 PDS5AQ29RF7 1337 aaKnown RBP16.92■□□□□ 0.3
SHMT2-219ENST00000555563 SALL1Q9NSC2 1324 aa16.92■□□□□ 0.3
SHMT2-219ENST00000555563 RRP1P56182 461 aaKnown RBP16.91■□□□□ 0.3
SHMT2-219ENST00000555563 HUNKP57058 714 aa16.91■□□□□ 0.3
SHMT2-219ENST00000555563 HDLBPQ00341 1268 aaKnown RBP16.91■□□□□ 0.3
SHMT2-219ENST00000555563 GRM1Q13255 1194 aa16.91■□□□□ 0.3
SHMT2-219ENST00000555563 SPDYE2Q495Y8 402 aa16.91■□□□□ 0.3
SHMT2-219ENST00000555563 CYP4F22Q6NT55 531 aa16.91■□□□□ 0.3
SHMT2-219ENST00000555563 SIRT2Q8IXJ6 389 aa16.91■□□□□ 0.3
SHMT2-219ENST00000555563 RPAP2Q8IXW5 612 aaPredicted RBP16.91■□□□□ 0.3
SHMT2-219ENST00000555563 C2orf69Q8N8R5 385 aa16.91■□□□□ 0.3
SHMT2-219ENST00000555563 HHIPL1Q96JK4 782 aa16.91■□□□□ 0.3
SHMT2-219ENST00000555563 GPR108Q9NPR9 543 aa16.91■□□□□ 0.3
SHMT2-219ENST00000555563 PRDM10Q9NQV6 1147 aa16.91■□□□□ 0.3
SHMT2-219ENST00000555563 WDR33Q9C0J8 1336 aaKnown RBP16.91■□□□□ 0.3
SHMT2-219ENST00000555563 SSC5DA1L4H1 1573 aa16.9■□□□□ 0.3
SHMT2-219ENST00000555563 GORABQ5T7V8 394 aa16.9■□□□□ 0.3
SHMT2-219ENST00000555563 AIDAQ96BJ3 306 aa16.9■□□□□ 0.3
SHMT2-219ENST00000555563 ZDHHC15Q96MV8 337 aa16.9■□□□□ 0.3
SHMT2-219ENST00000555563 DBNDD2Q9BQY9 259 aa16.9■□□□□ 0.3
SHMT2-219ENST00000555563 DEFB129Q9H1M3 183 aa16.9■□□□□ 0.3
SHMT2-219ENST00000555563 TDRD3Q9H7E2 651 aaKnown RBP16.9■□□□□ 0.3
SHMT2-219ENST00000555563 ZNF70Q9UC06 446 aaPredicted RBP16.9■□□□□ 0.3
SHMT2-219ENST00000555563 HMMRO75330 724 aa16.89■□□□□ 0.29
SHMT2-219ENST00000555563 LDHBP07195 334 aaKnown RBP16.89■□□□□ 0.29
SHMT2-219ENST00000555563 ARID4AP29374 1257 aaPredicted RBP16.89■□□□□ 0.29
SHMT2-219ENST00000555563 ECE1P42892 770 aa16.89■□□□□ 0.29
SHMT2-219ENST00000555563 CTCFP49711 727 aaPredicted RBP16.89■□□□□ 0.29
SHMT2-219ENST00000555563 DIXDC1Q155Q3 683 aa16.89■□□□□ 0.29
SHMT2-219ENST00000555563 PI16Q6UXB8 463 aa16.89■□□□□ 0.29
SHMT2-219ENST00000555563 PPP2R3BQ9Y5P8 575 aa16.89■□□□□ 0.29
SHMT2-219ENST00000555563 FKBP1BP68106 108 aa16.88■□□□□ 0.29
SHMT2-219ENST00000555563 ERC1Q8IUD2 1116 aa16.88■□□□□ 0.29
SHMT2-219ENST00000555563 TLR7Q9NYK1 1049 aaKnown RBP16.88■□□□□ 0.29
SHMT2-219ENST00000555563 HMG20BQ9P0W2 317 aa16.88■□□□□ 0.29
SHMT2-219ENST00000555563 DBNLQ9UJU6 430 aaKnown RBP16.88■□□□□ 0.29
SHMT2-219ENST00000555563 NF2P35240 595 aa16.87■□□□□ 0.29
SHMT2-219ENST00000555563 MCAMP43121 646 aa16.87■□□□□ 0.29
SHMT2-219ENST00000555563 TNFAIP1Q13829 316 aa16.87■□□□□ 0.29
SHMT2-219ENST00000555563 HSP90AB4PQ58FF6 505 aa16.87■□□□□ 0.29
SHMT2-219ENST00000555563 APOBEC3HQ6NTF7 200 aaKnown RBP16.87■□□□□ 0.29
SHMT2-219ENST00000555563 HHIPL2Q6UWX4 724 aa16.87■□□□□ 0.29
SHMT2-219ENST00000555563 MOB2Q70IA6 237 aa16.87■□□□□ 0.29
SHMT2-219ENST00000555563 ZGPATQ8N5A5 531 aaKnown RBP16.87■□□□□ 0.29
SHMT2-219ENST00000555563 SPATA5Q8NB90 893 aa16.87■□□□□ 0.29
SHMT2-219ENST00000555563 EAF2Q96CJ1 260 aaPredicted RBP16.87■□□□□ 0.29
SHMT2-219ENST00000555563 MRIQ9BWK5 157 aa16.87■□□□□ 0.29
SHMT2-219ENST00000555563 ABCF2Q9UG63 623 aa16.87■□□□□ 0.29
SHMT2-219ENST00000555563 DAGLAQ9Y4D2 1042 aa16.87■□□□□ 0.29
SHMT2-219ENST00000555563 MAST2Q6P0Q8 1798 aa16.87■□□□□ 0.29
SHMT2-219ENST00000555563 AOC2O75106 756 aa16.86■□□□□ 0.29
SHMT2-219ENST00000555563 UQCRFS1P1P0C7P4 283 aa16.86■□□□□ 0.29
SHMT2-219ENST00000555563 CACNB3P54284 484 aa16.86■□□□□ 0.29
SHMT2-219ENST00000555563 RASA3Q14644 834 aa16.86■□□□□ 0.29
SHMT2-219ENST00000555563 TTC39AQ5SRH9 613 aa16.86■□□□□ 0.29
SHMT2-219ENST00000555563 RGMBQ6NW40 437 aa16.86■□□□□ 0.29
SHMT2-219ENST00000555563 WBP1LQ9NX94 342 aa16.86■□□□□ 0.29
SHMT2-219ENST00000555563 TCP10L2B9ZVM9 353 aa16.85■□□□□ 0.29
SHMT2-219ENST00000555563 APBB1O00213 710 aa16.85■□□□□ 0.29
SHMT2-219ENST00000555563 TTLL12Q14166 644 aaPredicted RBP16.85■□□□□ 0.29
SHMT2-219ENST00000555563 AACSQ86V21 672 aa16.85■□□□□ 0.29
SHMT2-219ENST00000555563 DZIP1Q86YF9 867 aaKnown RBP16.85■□□□□ 0.29
SHMT2-219ENST00000555563 RHPN1Q8TCX5 695 aa16.85■□□□□ 0.29
SHMT2-219ENST00000555563 CCDC8Q9H0W5 538 aaPredicted RBP16.85■□□□□ 0.29
SHMT2-219ENST00000555563 IL1RAPL2Q9NP60 686 aa16.85■□□□□ 0.29
SHMT2-219ENST00000555563 AKAP11Q9UKA4 1901 aa16.85■□□□□ 0.29
SHMT2-219ENST00000555563 MYH2Q9UKX2 1941 aa16.85■□□□□ 0.29
SHMT2-219ENST00000555563 FAM155AB1AL88 458 aaPredicted RBP16.84■□□□□ 0.29
SHMT2-219ENST00000555563 UBE2Q2LH0YL09 131 aa16.84■□□□□ 0.29
SHMT2-219ENST00000555563 PRKG1Q13976 671 aa16.84■□□□□ 0.29
SHMT2-219ENST00000555563 CCDC158Q5M9N0 1113 aa16.84■□□□□ 0.29
SHMT2-219ENST00000555563 CDAN1Q8IWY9 1227 aa16.84■□□□□ 0.29
SHMT2-219ENST00000555563 TMOD2Q9NZR1 351 aa16.84■□□□□ 0.29
SHMT2-219ENST00000555563 GAKO14976 1311 aa16.83■□□□□ 0.28
SHMT2-219ENST00000555563 ZNF157P51786 506 aaPredicted RBP16.83■□□□□ 0.28
SHMT2-219ENST00000555563 LBX1P52954 281 aa16.83■□□□□ 0.28
SHMT2-219ENST00000555563 NBPF12Q5TAG4 269 aaPredicted RBP16.83■□□□□ 0.28
SHMT2-219ENST00000555563 SPTY2D1Q68D10 685 aaPredicted RBP16.83■□□□□ 0.28
SHMT2-219ENST00000555563 TBC1D9Q6ZT07 1266 aa16.83■□□□□ 0.28
SHMT2-219ENST00000555563 RASAL3Q86YV0 1011 aa16.83■□□□□ 0.28
SHMT2-219ENST00000555563 KIF1BPQ96EK5 621 aa16.83■□□□□ 0.28
SHMT2-219ENST00000555563 ZNF512BQ96KM6 892 aaPredicted RBP16.83■□□□□ 0.28
SHMT2-219ENST00000555563 TEPSINQ96N21 525 aa16.83■□□□□ 0.28
SHMT2-219ENST00000555563 TMEM39BQ9GZU3 492 aa16.83■□□□□ 0.28
SHMT2-219ENST00000555563 OTOFQ9HC10 1997 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms