RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 ZBTB7BO15156 539 aaPredicted RBP12.39□□□□□ -0.43
SCFD1-215ENST00000555259 TAF5LO75529 589 aa12.39□□□□□ -0.43
SCFD1-215ENST00000555259 GJB1P08034 283 aa12.39□□□□□ -0.43
SCFD1-215ENST00000555259 NEXNQ0ZGT2 675 aa12.39□□□□□ -0.43
SCFD1-215ENST00000555259 ECM2O94769 699 aaPredicted RBP12.38□□□□□ -0.43
SCFD1-215ENST00000555259 CETPP11597 493 aa12.38□□□□□ -0.43
SCFD1-215ENST00000555259 CTGFP29279 349 aa12.38□□□□□ -0.43
SCFD1-215ENST00000555259 CCDC30Q5VVM6 783 aa12.38□□□□□ -0.43
SCFD1-215ENST00000555259 ZNF804AQ7Z570 1209 aa12.38□□□□□ -0.43
SCFD1-215ENST00000555259 C8orf58Q8NAV2 365 aa12.38□□□□□ -0.43
SCFD1-215ENST00000555259 LRCH3Q96II8 777 aa12.38□□□□□ -0.43
SCFD1-215ENST00000555259 PLA2G12BQ9BX93 195 aa12.38□□□□□ -0.43
SCFD1-215ENST00000555259 TMEM39BQ9GZU3 492 aa12.38□□□□□ -0.43
SCFD1-215ENST00000555259 TDRD3Q9H7E2 651 aaKnown RBP12.38□□□□□ -0.43
SCFD1-215ENST00000555259 IFT57Q9NWB7 429 aa12.38□□□□□ -0.43
SCFD1-215ENST00000555259 SRRDQ9UH36 339 aa12.38□□□□□ -0.43
SCFD1-215ENST00000555259 CSF1RP07333 972 aa12.37□□□□□ -0.43
SCFD1-215ENST00000555259 CCL5P13501 91 aa12.37□□□□□ -0.43
SCFD1-215ENST00000555259 GRK4P32298 578 aa12.37□□□□□ -0.43
SCFD1-215ENST00000555259 C17orf99Q6UX52 265 aa12.37□□□□□ -0.43
SCFD1-215ENST00000555259 HELBQ8NG08 1087 aaPredicted RBP12.37□□□□□ -0.43
SCFD1-215ENST00000555259 TRIM47Q96LD4 638 aa12.37□□□□□ -0.43
SCFD1-215ENST00000555259 RIPOR2Q9Y4F9 1068 aa12.37□□□□□ -0.43
SCFD1-215ENST00000555259 TCP10L2B9ZVM9 353 aa12.36□□□□□ -0.43
SCFD1-215ENST00000555259 IRF6O14896 467 aa12.36□□□□□ -0.43
SCFD1-215ENST00000555259 OSBPP22059 807 aa12.36□□□□□ -0.43
SCFD1-215ENST00000555259 PSMC4P43686 418 aa12.36□□□□□ -0.43
SCFD1-215ENST00000555259 RALBP1Q15311 655 aa12.36□□□□□ -0.43
SCFD1-215ENST00000555259 RAET1EQ8TD07 263 aa12.36□□□□□ -0.43
SCFD1-215ENST00000555259 RNF208Q9H0X6 261 aa12.36□□□□□ -0.43
SCFD1-215ENST00000555259 SERPINA10Q9UK55 444 aa12.36□□□□□ -0.43
SCFD1-215ENST00000555259 TTF2Q9UNY4 1162 aaKnown RBP12.36□□□□□ -0.43
SCFD1-215ENST00000555259 SNCAIPQ9Y6H5 919 aa12.36□□□□□ -0.43
SCFD1-215ENST00000555259 FARP2O94887 1054 aaPredicted RBP12.35□□□□□ -0.43
SCFD1-215ENST00000555259 HOXD10P28358 340 aa12.35□□□□□ -0.43
SCFD1-215ENST00000555259 CASP7P55210 303 aa12.35□□□□□ -0.43
SCFD1-215ENST00000555259 GNAI1P63096 354 aa12.35□□□□□ -0.43
SCFD1-215ENST00000555259 SNAPC2Q13487 334 aa12.35□□□□□ -0.43
SCFD1-215ENST00000555259 ERO1BQ86YB8 467 aa12.35□□□□□ -0.43
SCFD1-215ENST00000555259 DZIP1LQ8IYY4 767 aaKnown RBP12.35□□□□□ -0.43
SCFD1-215ENST00000555259 CHMP4AQ9BY43 222 aa12.35□□□□□ -0.43
SCFD1-215ENST00000555259 CPA4Q9UI42 421 aa12.35□□□□□ -0.43
SCFD1-215ENST00000555259 ARAP2Q8WZ64 1704 aa12.35□□□□□ -0.43
SCFD1-215ENST00000555259 FAM205AQ6ZU69 1335 aa12.35□□□□□ -0.43
SCFD1-215ENST00000555259 MYPNQ86TC9 1320 aa12.35□□□□□ -0.43
SCFD1-215ENST00000555259 ANKRD18BA2A2Z9 1011 aa12.35□□□□□ -0.43
SCFD1-215ENST00000555259 TNNI2P48788 182 aa12.35□□□□□ -0.43
SCFD1-215ENST00000555259 GCKRQ14397 625 aa12.35□□□□□ -0.43
SCFD1-215ENST00000555259 WDR43Q15061 677 aaKnown RBP eCLIP12.35□□□□□ -0.43
SCFD1-215ENST00000555259 MFSD14BQ5SR56 506 aa12.35□□□□□ -0.43
SCFD1-215ENST00000555259 U2AF1L4Q8WU68 220 aaKnown RBP12.35□□□□□ -0.43
SCFD1-215ENST00000555259 A0A1B0GUL6 1792 aa12.34□□□□□ -0.43
SCFD1-215ENST00000555259 EVI5O60447 810 aa12.34□□□□□ -0.43
SCFD1-215ENST00000555259 FMNL1O95466 1100 aaPredicted RBP12.34□□□□□ -0.43
SCFD1-215ENST00000555259 UBXN2AP68543 259 aa12.34□□□□□ -0.43
SCFD1-215ENST00000555259 PPIL2Q13356 520 aa12.34□□□□□ -0.43
SCFD1-215ENST00000555259 ZKSCAN4Q969J2 545 aaPredicted RBP12.34□□□□□ -0.43
SCFD1-215ENST00000555259 WRNIP1Q96S55 665 aa12.34□□□□□ -0.43
SCFD1-215ENST00000555259 RNF39Q9H2S5 420 aa12.34□□□□□ -0.43
SCFD1-215ENST00000555259 BIN2Q9UBW5 565 aaPredicted RBP12.34□□□□□ -0.43
SCFD1-215ENST00000555259 STAP2Q9UGK3 403 aa12.34□□□□□ -0.43
SCFD1-215ENST00000555259 ADAMTS8Q9UP79 889 aa12.34□□□□□ -0.43
SCFD1-215ENST00000555259 CRKP46108 304 aa12.33□□□□□ -0.44
SCFD1-215ENST00000555259 CALD1Q05682 793 aaKnown RBP12.33□□□□□ -0.44
SCFD1-215ENST00000555259 TSPYL6Q8N831 410 aa12.33□□□□□ -0.44
SCFD1-215ENST00000555259 ADGRA2Q96PE1 1338 aa12.32□□□□□ -0.44
SCFD1-215ENST00000555259 SGPL1O95470 568 aa12.32□□□□□ -0.44
SCFD1-215ENST00000555259 PRKCZQ05513 592 aa12.32□□□□□ -0.44
SCFD1-215ENST00000555259 UNC93B1Q9H1C4 597 aa12.32□□□□□ -0.44
SCFD1-215ENST00000555259 PDHXO00330 501 aa12.31□□□□□ -0.44
SCFD1-215ENST00000555259 CACNB3P54284 484 aa12.31□□□□□ -0.44
SCFD1-215ENST00000555259 PPATQ06203 517 aa12.31□□□□□ -0.44
SCFD1-215ENST00000555259 IFIT5Q13325 482 aaKnown RBP12.31□□□□□ -0.44
SCFD1-215ENST00000555259 GPR153Q6NV75 609 aa12.31□□□□□ -0.44
SCFD1-215ENST00000555259 G2E3Q7L622 706 aa12.31□□□□□ -0.44
SCFD1-215ENST00000555259 ANKRD23Q86SG2 305 aa12.31□□□□□ -0.44
SCFD1-215ENST00000555259 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.31□□□□□ -0.44
SCFD1-215ENST00000555259 SLAIN1Q8ND83 568 aa12.31□□□□□ -0.44
SCFD1-215ENST00000555259 TDRD7Q8NHU6 1098 aaKnown RBP12.31□□□□□ -0.44
SCFD1-215ENST00000555259 STK31Q9BXU1 1019 aa12.31□□□□□ -0.44
SCFD1-215ENST00000555259 MYH16Q9H6N6 1097 aa12.31□□□□□ -0.44
SCFD1-215ENST00000555259 MYBBP1AQ9BQG0 1328 aaKnown RBP12.31□□□□□ -0.44
SCFD1-215ENST00000555259 DEFB123Q8N688 67 aa12.3□□□□□ -0.44
SCFD1-215ENST00000555259 EYSQ5T1H1 3165 aa12.3□□□□□ -0.44
SCFD1-215ENST00000555259 LAMA2P24043 3122 aaKnown RBP12.3□□□□□ -0.44
SCFD1-215ENST00000555259 SPTBN5Q9NRC6 3674 aaKnown RBP12.3□□□□□ -0.44
SCFD1-215ENST00000555259 PLIN1O60240 522 aa12.3□□□□□ -0.44
SCFD1-215ENST00000555259 FOXO4P98177 505 aa12.3□□□□□ -0.44
SCFD1-215ENST00000555259 STXBP5LQ9Y2K9 1186 aa12.3□□□□□ -0.44
SCFD1-215ENST00000555259 CHMP3Q9Y3E7 222 aa12.3□□□□□ -0.44
SCFD1-215ENST00000555259 APAF1O14727 1248 aa12.29□□□□□ -0.44
SCFD1-215ENST00000555259 HIBADHP31937 336 aaKnown RBP12.29□□□□□ -0.44
SCFD1-215ENST00000555259 BMP8BP34820 402 aa12.29□□□□□ -0.44
SCFD1-215ENST00000555259 GYG1P46976 350 aa12.29□□□□□ -0.44
SCFD1-215ENST00000555259 FCGRTP55899 365 aa12.29□□□□□ -0.44
SCFD1-215ENST00000555259 GRIK5Q16478 980 aa12.29□□□□□ -0.44
SCFD1-215ENST00000555259 LDHAL6AQ6ZMR3 332 aa12.29□□□□□ -0.44
SCFD1-215ENST00000555259 Q7L0L9 218 aa12.29□□□□□ -0.44
SCFD1-215ENST00000555259 FAM83AQ86UY5 434 aa12.29□□□□□ -0.44
SCFD1-215ENST00000555259 LINS1Q8NG48 757 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms