RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 CCL15Q16663 113 aa10.94□□□□□ -0.66
CLSTN3-212ENST00000541770 LINS1Q8NG48 757 aa10.94□□□□□ -0.66
CLSTN3-212ENST00000541770 CNKSR2Q8WXI2 1034 aa10.94□□□□□ -0.66
CLSTN3-212ENST00000541770 ZNF333Q96JL9 665 aa10.94□□□□□ -0.66
CLSTN3-212ENST00000541770 TESPA1A2RU30 521 aaPredicted RBP10.93□□□□□ -0.66
CLSTN3-212ENST00000541770 TCP10L2B9ZVM9 353 aa10.93□□□□□ -0.66
CLSTN3-212ENST00000541770 F6X3S4 739 aa10.93□□□□□ -0.66
CLSTN3-212ENST00000541770 IPO8O15397 1037 aaKnown RBP10.93□□□□□ -0.66
CLSTN3-212ENST00000541770 TNFAIP1Q13829 316 aa10.93□□□□□ -0.66
CLSTN3-212ENST00000541770 GCKRQ14397 625 aa10.93□□□□□ -0.66
CLSTN3-212ENST00000541770 KIF22Q14807 665 aa10.93□□□□□ -0.66
CLSTN3-212ENST00000541770 SH3TC2Q8TF17 1288 aa10.93□□□□□ -0.66
CLSTN3-212ENST00000541770 OTUD5Q96G74 571 aa10.93□□□□□ -0.66
CLSTN3-212ENST00000541770 API5Q9BZZ5 524 aaKnown RBP10.93□□□□□ -0.66
CLSTN3-212ENST00000541770 TDRD3Q9H7E2 651 aaKnown RBP10.93□□□□□ -0.66
CLSTN3-212ENST00000541770 NOB1Q9ULX3 412 aaKnown RBP10.93□□□□□ -0.66
CLSTN3-212ENST00000541770 ARAP2Q8WZ64 1704 aa10.92□□□□□ -0.66
CLSTN3-212ENST00000541770 KIAA0100Q14667 2235 aaKnown RBP10.92□□□□□ -0.66
CLSTN3-212ENST00000541770 H0YGN5 161 aa10.92□□□□□ -0.66
CLSTN3-212ENST00000541770 WDHD1O75717 1129 aaPredicted RBP10.92□□□□□ -0.66
CLSTN3-212ENST00000541770 GTF2A2P52657 109 aa10.92□□□□□ -0.66
CLSTN3-212ENST00000541770 IFIT5Q13325 482 aaKnown RBP10.92□□□□□ -0.66
CLSTN3-212ENST00000541770 TAF7LQ5H9L4 462 aa10.92□□□□□ -0.66
CLSTN3-212ENST00000541770 BEND3Q5T5X7 828 aa10.92□□□□□ -0.66
CLSTN3-212ENST00000541770 BRI3BPQ8WY22 251 aa10.92□□□□□ -0.66
CLSTN3-212ENST00000541770 DPF3Q92784 378 aa10.92□□□□□ -0.66
CLSTN3-212ENST00000541770 PLA2G12BQ9BX93 195 aa10.92□□□□□ -0.66
CLSTN3-212ENST00000541770 ZNF70Q9UC06 446 aaPredicted RBP10.92□□□□□ -0.66
CLSTN3-212ENST00000541770 RCAN3Q9UKA8 241 aa10.92□□□□□ -0.66
CLSTN3-212ENST00000541770 TTF2Q9UNY4 1162 aaKnown RBP10.92□□□□□ -0.66
CLSTN3-212ENST00000541770 CSADQ9Y600 493 aa10.92□□□□□ -0.66
CLSTN3-212ENST00000541770 ALDH1L1O75891 902 aa10.91□□□□□ -0.66
CLSTN3-212ENST00000541770 CSF1RP07333 972 aa10.91□□□□□ -0.66
CLSTN3-212ENST00000541770 IL1R1P14778 569 aa10.91□□□□□ -0.66
CLSTN3-212ENST00000541770 TNNI2P48788 182 aa10.91□□□□□ -0.66
CLSTN3-212ENST00000541770 FKBP1AP62942 108 aaKnown RBP10.91□□□□□ -0.66
CLSTN3-212ENST00000541770 VGLL4Q14135 290 aa10.91□□□□□ -0.66
CLSTN3-212ENST00000541770 ATF7IPQ6VMQ6 1270 aa10.91□□□□□ -0.66
CLSTN3-212ENST00000541770 CHRDL2Q6WN34 429 aa10.91□□□□□ -0.66
CLSTN3-212ENST00000541770 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.91□□□□□ -0.66
CLSTN3-212ENST00000541770 CDAN1Q8IWY9 1227 aa10.91□□□□□ -0.66
CLSTN3-212ENST00000541770 FAM43AQ8N2R8 423 aa10.91□□□□□ -0.66
CLSTN3-212ENST00000541770 MS4A4AQ96JQ5 239 aa10.91□□□□□ -0.66
CLSTN3-212ENST00000541770 ARHGAP39Q9C0H5 1083 aa10.91□□□□□ -0.66
CLSTN3-212ENST00000541770 SRCIN1Q9C0H9 1055 aa10.91□□□□□ -0.66
CLSTN3-212ENST00000541770 CASP7P55210 303 aa10.9□□□□□ -0.66
CLSTN3-212ENST00000541770 MAP3K9P80192 1104 aa10.9□□□□□ -0.66
CLSTN3-212ENST00000541770 SPDYE2Q495Y8 402 aa10.9□□□□□ -0.66
CLSTN3-212ENST00000541770 MFSD14BQ5SR56 506 aa10.9□□□□□ -0.66
CLSTN3-212ENST00000541770 ZKSCAN2Q63HK3 967 aa10.9□□□□□ -0.66
CLSTN3-212ENST00000541770 SLC4A10Q6U841 1118 aa10.9□□□□□ -0.66
CLSTN3-212ENST00000541770 ZNF594Q96JF6 807 aaPredicted RBP10.9□□□□□ -0.66
CLSTN3-212ENST00000541770 TMEM39BQ9GZU3 492 aa10.9□□□□□ -0.66
CLSTN3-212ENST00000541770 CNNM1Q9NRU3 951 aa10.9□□□□□ -0.66
CLSTN3-212ENST00000541770 IRS2Q9Y4H2 1338 aa10.89□□□□□ -0.67
CLSTN3-212ENST00000541770 TRIM27P14373 513 aa10.89□□□□□ -0.67
CLSTN3-212ENST00000541770 LDHAL6AQ6ZMR3 332 aa10.89□□□□□ -0.67
CLSTN3-212ENST00000541770 C15orf52Q6ZUT6 534 aaKnown RBP10.89□□□□□ -0.67
CLSTN3-212ENST00000541770 FRAT1Q92837 279 aaPredicted RBP10.89□□□□□ -0.67
CLSTN3-212ENST00000541770 AK9Q5TCS8 1911 aa10.89□□□□□ -0.67
CLSTN3-212ENST00000541770 CENPFP49454 3210 aa10.88□□□□□ -0.67
CLSTN3-212ENST00000541770 MKI67P46013 3256 aaKnown RBP10.88□□□□□ -0.67
CLSTN3-212ENST00000541770 CRKP46108 304 aa10.88□□□□□ -0.67
CLSTN3-212ENST00000541770 GYG1P46976 350 aa10.88□□□□□ -0.67
CLSTN3-212ENST00000541770 LACTBP83111 547 aaPredicted RBP10.88□□□□□ -0.67
CLSTN3-212ENST00000541770 CCDC57Q2TAC2 916 aa10.88□□□□□ -0.67
CLSTN3-212ENST00000541770 LMBR1LQ6UX01 489 aa10.88□□□□□ -0.67
CLSTN3-212ENST00000541770 DZIP1LQ8IYY4 767 aaKnown RBP10.88□□□□□ -0.67
CLSTN3-212ENST00000541770 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.88□□□□□ -0.67
CLSTN3-212ENST00000541770 TEPSINQ96N21 525 aa10.88□□□□□ -0.67
CLSTN3-212ENST00000541770 SERPINA10Q9UK55 444 aa10.88□□□□□ -0.67
CLSTN3-212ENST00000541770 UTYO14607 1347 aa10.87□□□□□ -0.67
CLSTN3-212ENST00000541770 GRM8O00222 908 aa10.87□□□□□ -0.67
CLSTN3-212ENST00000541770 TLR2O60603 784 aa10.87□□□□□ -0.67
CLSTN3-212ENST00000541770 FRAT2O75474 233 aaPredicted RBP10.87□□□□□ -0.67
CLSTN3-212ENST00000541770 CETPP11597 493 aa10.87□□□□□ -0.67
CLSTN3-212ENST00000541770 HIBADHP31937 336 aaKnown RBP10.87□□□□□ -0.67
CLSTN3-212ENST00000541770 CACNB3P54284 484 aa10.87□□□□□ -0.67
CLSTN3-212ENST00000541770 FOXO4P98177 505 aa10.87□□□□□ -0.67
CLSTN3-212ENST00000541770 CHAF1AQ13111 956 aaPredicted RBP10.87□□□□□ -0.67
CLSTN3-212ENST00000541770 MTFR1Q15390 333 aa10.87□□□□□ -0.67
CLSTN3-212ENST00000541770 WRNIP1Q96S55 665 aa10.87□□□□□ -0.67
CLSTN3-212ENST00000541770 RBM27Q9P2N5 1060 aaKnown RBP10.87□□□□□ -0.67
CLSTN3-212ENST00000541770 BIN2Q9UBW5 565 aaPredicted RBP10.87□□□□□ -0.67
CLSTN3-212ENST00000541770 IQSEC3Q9UPP2 1182 aaPredicted RBP10.87□□□□□ -0.67
CLSTN3-212ENST00000541770 HTTP42858 3142 aa10.87□□□□□ -0.67
CLSTN3-212ENST00000541770 FAM205AQ6ZU69 1335 aa10.86□□□□□ -0.67
CLSTN3-212ENST00000541770 SPDYE5A6NIY4 337 aa10.86□□□□□ -0.67
CLSTN3-212ENST00000541770 BTBD19C9JJ37 291 aa10.86□□□□□ -0.67
CLSTN3-212ENST00000541770 MS4A1P11836 297 aa10.86□□□□□ -0.67
CLSTN3-212ENST00000541770 VPS37DQ86XT2 251 aa10.86□□□□□ -0.67
CLSTN3-212ENST00000541770 ERO1BQ86YB8 467 aa10.86□□□□□ -0.67
CLSTN3-212ENST00000541770 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.86□□□□□ -0.67
CLSTN3-212ENST00000541770 TDRD7Q8NHU6 1098 aaKnown RBP10.86□□□□□ -0.67
CLSTN3-212ENST00000541770 RAET1EQ8TD07 263 aa10.86□□□□□ -0.67
CLSTN3-212ENST00000541770 ZKSCAN4Q969J2 545 aaPredicted RBP10.86□□□□□ -0.67
CLSTN3-212ENST00000541770 C9orf78Q9NZ63 289 aaPredicted RBP10.86□□□□□ -0.67
CLSTN3-212ENST00000541770 TMOD2Q9NZR1 351 aa10.86□□□□□ -0.67
CLSTN3-212ENST00000541770 CPA4Q9UI42 421 aa10.86□□□□□ -0.67
CLSTN3-212ENST00000541770 SNCAIPQ9Y6H5 919 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms