RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 GRAMD1CQ8IYS0 662 aa15.75■□□□□ 0.11
PTPN1-202ENST00000541713 PDCL2Q8N4E4 241 aa15.75■□□□□ 0.11
PTPN1-202ENST00000541713 TTLL11Q8NHH1 800 aa15.75■□□□□ 0.11
PTPN1-202ENST00000541713 SMARCC2Q8TAQ2 1214 aa15.75■□□□□ 0.11
PTPN1-202ENST00000541713 CTNNA3Q9UI47 895 aa15.75■□□□□ 0.11
PTPN1-202ENST00000541713 CYP2D7A0A087X1C5 515 aa15.75■□□□□ 0.11
PTPN1-202ENST00000541713 FOXN1O15353 648 aa15.75■□□□□ 0.11
PTPN1-202ENST00000541713 PNOCQ13519 176 aa15.75■□□□□ 0.11
PTPN1-202ENST00000541713 CCDC102BQ68D86 513 aa15.75■□□□□ 0.11
PTPN1-202ENST00000541713 NAPBQ9H115 298 aa15.75■□□□□ 0.11
PTPN1-202ENST00000541713 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.75■□□□□ 0.111e-6■■□□□ 12
PTPN1-202ENST00000541713 RCOR1Q9UKL0 485 aa15.75■□□□□ 0.11
PTPN1-202ENST00000541713 SH3TC1Q8TE82 1336 aa15.75■□□□□ 0.11
PTPN1-202ENST00000541713 TSGA10IPQ3SY00 556 aa15.74■□□□□ 0.11
PTPN1-202ENST00000541713 SDR42E1Q8WUS8 393 aa15.74■□□□□ 0.11
PTPN1-202ENST00000541713 APPBP2Q92624 585 aa15.74■□□□□ 0.11
PTPN1-202ENST00000541713 ATG3Q9NT62 314 aa15.74■□□□□ 0.11
PTPN1-202ENST00000541713 LRP2BPQ9P2M1 347 aa15.74■□□□□ 0.11
PTPN1-202ENST00000541713 BAZ2BQ9UIF8 2168 aaKnown RBP15.74■□□□□ 0.11
PTPN1-202ENST00000541713 GOLGA8AA7E2F4 631 aa15.74■□□□□ 0.11
PTPN1-202ENST00000541713 PALLDQ8WX93 1383 aa15.74■□□□□ 0.11
PTPN1-202ENST00000541713 ZNF202O95125 648 aa15.74■□□□□ 0.11
PTPN1-202ENST00000541713 GTF2E1P29083 439 aaPredicted RBP15.74■□□□□ 0.11
PTPN1-202ENST00000541713 MYSM1Q5VVJ2 828 aa15.74■□□□□ 0.11
PTPN1-202ENST00000541713 STAMQ92783 540 aa15.74■□□□□ 0.11
PTPN1-202ENST00000541713 WDHD1O75717 1129 aaPredicted RBP15.73■□□□□ 0.11
PTPN1-202ENST00000541713 GUCY1A2P33402 732 aa15.73■□□□□ 0.11
PTPN1-202ENST00000541713 HOMER1Q86YM7 354 aa15.73■□□□□ 0.11
PTPN1-202ENST00000541713 XPO4Q9C0E2 1151 aaKnown RBP15.73■□□□□ 0.11
PTPN1-202ENST00000541713 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.73■□□□□ 0.11
PTPN1-202ENST00000541713 ANO10Q9NW15 660 aa15.73■□□□□ 0.11
PTPN1-202ENST00000541713 HPS5Q9UPZ3 1129 aa15.73■□□□□ 0.11
PTPN1-202ENST00000541713 NLRP10Q86W26 655 aa15.73■□□□□ 0.11
PTPN1-202ENST00000541713 CCDC112Q8NEF3 446 aa15.73■□□□□ 0.11
PTPN1-202ENST00000541713 SLC4A9Q96Q91 983 aa15.73■□□□□ 0.11
PTPN1-202ENST00000541713 SERPINC1P01008 464 aa15.73■□□□□ 0.11
PTPN1-202ENST00000541713 IQCB1Q15051 598 aa15.73■□□□□ 0.11
PTPN1-202ENST00000541713 KRT40Q6A162 431 aa15.73■□□□□ 0.11
PTPN1-202ENST00000541713 KLHL10Q6JEL2 608 aa15.73■□□□□ 0.11
PTPN1-202ENST00000541713 VPS37DQ86XT2 251 aa15.73■□□□□ 0.11
PTPN1-202ENST00000541713 FBXO18Q8NFZ0 1043 aa15.73■□□□□ 0.11
PTPN1-202ENST00000541713 PFKFB1P16118 471 aa15.72■□□□□ 0.11
PTPN1-202ENST00000541713 CASP1P29466 404 aa15.72■□□□□ 0.11
PTPN1-202ENST00000541713 TRIM29Q14134 588 aa15.72■□□□□ 0.11
PTPN1-202ENST00000541713 TRMT44Q8IYL2 757 aaKnown RBP15.72■□□□□ 0.11
PTPN1-202ENST00000541713 LINC00301Q8NCQ3 95 aa15.72■□□□□ 0.11
PTPN1-202ENST00000541713 NEDD4P46934 1319 aa15.72■□□□□ 0.11
PTPN1-202ENST00000541713 PDE6AP16499 860 aa15.72■□□□□ 0.11
PTPN1-202ENST00000541713 FAM182BQ5T319 152 aa15.72■□□□□ 0.11
PTPN1-202ENST00000541713 NAA16Q6N069 864 aaPredicted RBP15.72■□□□□ 0.11
PTPN1-202ENST00000541713 BTBD18B2RXH4 712 aa15.71■□□□□ 0.11
PTPN1-202ENST00000541713 IARSP41252 1262 aaKnown RBP15.71■□□□□ 0.11
PTPN1-202ENST00000541713 ZBTB38Q8NAP3 1195 aaPredicted RBP15.71■□□□□ 0.11
PTPN1-202ENST00000541713 TDRD7Q8NHU6 1098 aaKnown RBP15.71■□□□□ 0.11
PTPN1-202ENST00000541713 RAI14Q9P0K7 980 aa15.71■□□□□ 0.11
PTPN1-202ENST00000541713 ERVV-2B6SEH9 535 aa15.71■□□□□ 0.11
PTPN1-202ENST00000541713 GRIN1Q05586 938 aa15.71■□□□□ 0.11
PTPN1-202ENST00000541713 CFAP100Q494V2 611 aa15.71■□□□□ 0.11
PTPN1-202ENST00000541713 CEP135Q66GS9 1140 aa15.71■□□□□ 0.11
PTPN1-202ENST00000541713 DHX40Q8IX18 779 aaKnown RBP15.71■□□□□ 0.11
PTPN1-202ENST00000541713 MED1Q15648 1581 aaPredicted RBP15.71■□□□□ 0.11
PTPN1-202ENST00000541713 ZBTB43O43298 467 aa15.71■□□□□ 0.11
PTPN1-202ENST00000541713 NR5A1Q13285 461 aa15.71■□□□□ 0.11
PTPN1-202ENST00000541713 ANO1Q5XXA6 986 aa15.71■□□□□ 0.11
PTPN1-202ENST00000541713 LRRC8AQ8IWT6 810 aa15.71■□□□□ 0.11
PTPN1-202ENST00000541713 SLC12A7Q9Y666 1083 aa15.71■□□□□ 0.11
PTPN1-202ENST00000541713 KDM3BQ7LBC6 1761 aa15.71■□□□□ 0.1
PTPN1-202ENST00000541713 DHX16O60231 1041 aaKnown RBP15.7■□□□□ 0.1
PTPN1-202ENST00000541713 SYKP43405 635 aa15.7■□□□□ 0.1
PTPN1-202ENST00000541713 CTSWP56202 376 aa15.7■□□□□ 0.1
PTPN1-202ENST00000541713 PTPN14Q15678 1187 aa15.7■□□□□ 0.1
PTPN1-202ENST00000541713 PLA2G4DQ86XP0 818 aa15.7■□□□□ 0.1
PTPN1-202ENST00000541713 ZNF274Q96GC6 653 aaPredicted RBP15.7■□□□□ 0.1
PTPN1-202ENST00000541713 ISCA1Q9BUE6 129 aa15.7■□□□□ 0.1
PTPN1-202ENST00000541713 SLC4A4Q9Y6R1 1079 aa15.7■□□□□ 0.1
PTPN1-202ENST00000541713 CPLX3Q8WVH0 158 aa15.7■□□□□ 0.1
PTPN1-202ENST00000541713 PRIMPOLQ96LW4 560 aa15.7■□□□□ 0.1
PTPN1-202ENST00000541713 LLPHQ9BRT6 129 aaKnown RBP15.7■□□□□ 0.1
PTPN1-202ENST00000541713 ZSWIM5Q9P217 1185 aa15.7■□□□□ 0.1
PTPN1-202ENST00000541713 MB21D2Q8IYB1 491 aaPredicted RBP15.7■□□□□ 0.1
PTPN1-202ENST00000541713 ANGEL1Q9UNK9 670 aaKnown RBP15.7■□□□□ 0.1
PTPN1-202ENST00000541713 GYG1P46976 350 aa15.69■□□□□ 0.1
PTPN1-202ENST00000541713 EVX2Q03828 476 aa15.69■□□□□ 0.1
PTPN1-202ENST00000541713 NBPF3Q9H094 633 aa15.69■□□□□ 0.1
PTPN1-202ENST00000541713 STX17P56962 302 aa15.69■□□□□ 0.1
PTPN1-202ENST00000541713 RASGRF1Q13972 1273 aa15.69■□□□□ 0.1
PTPN1-202ENST00000541713 GIGYF2Q6Y7W6 1299 aaKnown RBP15.69■□□□□ 0.1
PTPN1-202ENST00000541713 FMR1NBQ8N0W7 255 aaPredicted RBP15.69■□□□□ 0.1
PTPN1-202ENST00000541713 CCAR2Q8N163 923 aaKnown RBP15.69■□□□□ 0.1
PTPN1-202ENST00000541713 KIAA1468Q9P260 1216 aa15.69■□□□□ 0.1
PTPN1-202ENST00000541713 MST1RQ04912 1400 aa15.69■□□□□ 0.1
PTPN1-202ENST00000541713 TUBGCP6Q96RT7 1819 aa15.69■□□□□ 0.1
PTPN1-202ENST00000541713 MROH7-TTC4A0A0A0MT08 1334 aa15.69■□□□□ 0.1
PTPN1-202ENST00000541713 RANBP6O60518 1105 aaKnown RBP15.69■□□□□ 0.1
PTPN1-202ENST00000541713 PCCAP05165 728 aaPredicted RBP15.69■□□□□ 0.1
PTPN1-202ENST00000541713 CDK11BP21127 795 aaKnown RBP15.69■□□□□ 0.1
PTPN1-202ENST00000541713 ATP6V1AP38606 617 aa15.69■□□□□ 0.1
PTPN1-202ENST00000541713 AFMP43652 599 aa15.69■□□□□ 0.1
PTPN1-202ENST00000541713 KIF23Q02241 960 aaPredicted RBP15.69■□□□□ 0.1
PTPN1-202ENST00000541713 LRRFIP1Q32MZ4 808 aaKnown RBP15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms