RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, human

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD4-208	ENST00000540960	MDM2	Q00987	491 aa	Predicted RBP	10.45	□□□□□ -0.74
CHD4-208	ENST00000540960	EYA3	Q99504	573 aa		10.45	□□□□□ -0.74
CHD4-208	ENST00000540960	UTP14A	Q9BVJ6	771 aa	Known RBP	10.45	□□□□□ -0.74
CHD4-208	ENST00000540960	STK31	Q9BXU1	1019 aa		10.45	□□□□□ -0.74
CHD4-208	ENST00000540960	ZC3H12C	Q9C0D7	883 aa	Known RBP	10.45	□□□□□ -0.74
CHD4-208	ENST00000540960	TTYH1	Q9H313	450 aa	Predicted RBP	10.45	□□□□□ -0.74
CHD4-208	ENST00000540960	ELP3	Q9H9T3	547 aa		10.45	□□□□□ -0.74
CHD4-208	ENST00000540960	CEMIP	Q8WUJ3	1361 aa		10.44	□□□□□ -0.74
CHD4-208	ENST00000540960	CCL15-CCL14	A0A0B4J2E2	113 aa		10.44	□□□□□ -0.74
CHD4-208	ENST00000540960	USP2	O75604	605 aa	Predicted RBP	10.44	□□□□□ -0.74
CHD4-208	ENST00000540960	FOSL2	P15408	326 aa		10.44	□□□□□ -0.74
CHD4-208	ENST00000540960	PSMC4	P43686	418 aa		10.44	□□□□□ -0.74
CHD4-208	ENST00000540960	CCL15	Q16663	113 aa		10.44	□□□□□ -0.74
CHD4-208	ENST00000540960	CCDC30	Q5VVM6	783 aa		10.44	□□□□□ -0.74
CHD4-208	ENST00000540960	ADAMTS19	Q8TE59	1207 aa		10.44	□□□□□ -0.74
CHD4-208	ENST00000540960	OPTN	Q96CV9	577 aa		10.44	□□□□□ -0.74
CHD4-208	ENST00000540960	LRFN3	Q9BTN0	628 aa		10.44	□□□□□ -0.74
CHD4-208	ENST00000540960	NOB1	Q9ULX3	412 aa	Known RBP	10.44	□□□□□ -0.74
CHD4-208	ENST00000540960	TCF20	Q9UGU0	1960 aa	Known RBP	10.44	□□□□□ -0.74
CHD4-208	ENST00000540960	MYPN	Q86TC9	1320 aa		10.43	□□□□□ -0.74
CHD4-208	ENST00000540960		G3V3G9	751 aa		10.43	□□□□□ -0.74
CHD4-208	ENST00000540960	EIF5B	O60841	1220 aa	Known RBP	10.43	□□□□□ -0.74
CHD4-208	ENST00000540960	UBXN2A	P68543	259 aa		10.43	□□□□□ -0.74
CHD4-208	ENST00000540960	DCAF8	Q5TAQ9	597 aa		10.43	□□□□□ -0.74
CHD4-208	ENST00000540960	C20orf194	Q5TEA3	1177 aa		10.43	□□□□□ -0.74
CHD4-208	ENST00000540960	GIGYF2	Q6Y7W6	1299 aa	Known RBP	10.43	□□□□□ -0.74
CHD4-208	ENST00000540960	KIF6	Q6ZMV9	814 aa		10.43	□□□□□ -0.74
CHD4-208	ENST00000540960	NECAB2	Q7Z6G3	386 aa		10.43	□□□□□ -0.74
CHD4-208	ENST00000540960	MRPL50	Q8N5N7	158 aa	Known RBP	10.43	□□□□□ -0.74
CHD4-208	ENST00000540960	DEFB129	Q9H1M3	183 aa		10.43	□□□□□ -0.74
CHD4-208	ENST00000540960	HDAC5	Q9UQL6	1122 aa		10.43	□□□□□ -0.74
CHD4-208	ENST00000540960	COG6	Q9Y2V7	657 aa		10.43	□□□□□ -0.74
CHD4-208	ENST00000540960	HCN4	Q9Y3Q4	1203 aa		10.43	□□□□□ -0.74
CHD4-208	ENST00000540960	USP17L3	A6NCW0	530 aa		10.42	□□□□□ -0.74
CHD4-208	ENST00000540960	USP17L4	A6NCW7	530 aa		10.42	□□□□□ -0.74
CHD4-208	ENST00000540960	PPP1R12B	O60237	982 aa	Predicted RBP	10.42	□□□□□ -0.74
CHD4-208	ENST00000540960	TRIM27	P14373	513 aa		10.42	□□□□□ -0.74
CHD4-208	ENST00000540960	MYL6B	P14649	208 aa		10.42	□□□□□ -0.74
CHD4-208	ENST00000540960	PRKCZ	Q05513	592 aa		10.42	□□□□□ -0.74
CHD4-208	ENST00000540960	NBPF12	Q5TAG4	269 aa	Predicted RBP	10.42	□□□□□ -0.74
CHD4-208	ENST00000540960	MCM10	Q7L590	875 aa		10.42	□□□□□ -0.74
CHD4-208	ENST00000540960	USP17L1	Q7RTZ2	530 aa		10.42	□□□□□ -0.74
CHD4-208	ENST00000540960	TMC4	Q7Z404	712 aa		10.42	□□□□□ -0.74
CHD4-208	ENST00000540960	PODN	Q7Z5L7	613 aa		10.42	□□□□□ -0.74
CHD4-208	ENST00000540960	ITPRIP	Q8IWB1	547 aa		10.42	□□□□□ -0.74
CHD4-208	ENST00000540960	PANK1	Q8TE04	598 aa		10.42	□□□□□ -0.74
CHD4-208	ENST00000540960	NECAB3	Q96P71	396 aa	Predicted RBP	10.42	□□□□□ -0.74
CHD4-208	ENST00000540960	THUMPD2	Q9BTF0	503 aa	Known RBP	10.42	□□□□□ -0.74
CHD4-208	ENST00000540960	CRISPLD2	Q9H0B8	497 aa		10.42	□□□□□ -0.74
CHD4-208	ENST00000540960	CPA4	Q9UI42	421 aa		10.42	□□□□□ -0.74
CHD4-208	ENST00000540960	GABRQ	Q9UN88	632 aa		10.42	□□□□□ -0.74
CHD4-208	ENST00000540960	MGAM	O43451	1857 aa		10.42	□□□□□ -0.74
CHD4-208	ENST00000540960	FMNL1	O95466	1100 aa	Predicted RBP	10.41	□□□□□ -0.74
CHD4-208	ENST00000540960	ELN	P15502	786 aa		10.41	□□□□□ -0.74
CHD4-208	ENST00000540960	MRE11	P49959	708 aa		10.41	□□□□□ -0.74
CHD4-208	ENST00000540960	HDAC1	Q13547	482 aa	Predicted RBP	10.41	□□□□□ -0.74
CHD4-208	ENST00000540960	PARP10	Q53GL7	1025 aa		10.41	□□□□□ -0.74
CHD4-208	ENST00000540960	C17orf99	Q6UX52	265 aa		10.41	□□□□□ -0.74
CHD4-208	ENST00000540960	APOBEC3F	Q8IUX4	373 aa	Known RBP	10.41	□□□□□ -0.74
CHD4-208	ENST00000540960	ZBED3	Q96IU2	234 aa	Predicted RBP	10.41	□□□□□ -0.74
CHD4-208	ENST00000540960	UHRF1	Q96T88	793 aa	Predicted RBP	10.41	□□□□□ -0.74
CHD4-208	ENST00000540960	C1QTNF1	Q9BXJ1	281 aa		10.41	□□□□□ -0.74
CHD4-208	ENST00000540960	DDX60L	Q5H9U9	1706 aa	Known RBP	10.41	□□□□□ -0.74
CHD4-208	ENST00000540960	UFL1	O94874	794 aa		10.4	□□□□□ -0.74
CHD4-208	ENST00000540960	CCT4	P50991	539 aa	Known RBP	10.4	□□□□□ -0.74
CHD4-208	ENST00000540960	DCTN1	Q14203	1278 aa		10.4	□□□□□ -0.74
CHD4-208	ENST00000540960	ANKRD13A	Q8IZ07	590 aa		10.4	□□□□□ -0.74
CHD4-208	ENST00000540960	C8orf58	Q8NAV2	365 aa		10.4	□□□□□ -0.74
CHD4-208	ENST00000540960	EPHX3	Q9H6B9	360 aa		10.4	□□□□□ -0.74
CHD4-208	ENST00000540960	PAK6	Q9NQU5	681 aa	Predicted RBP	10.4	□□□□□ -0.74
CHD4-208	ENST00000540960	TSHZ2	Q9NRE2	1034 aa		10.4	□□□□□ -0.74
CHD4-208	ENST00000540960	PCDHAC2	Q9Y5I4	1007 aa		10.4	□□□□□ -0.74
CHD4-208	ENST00000540960	UNCX	A6NJT0	531 aa		10.39	□□□□□ -0.75
CHD4-208	ENST00000540960	BTBD19	C9JJ37	291 aa		10.39	□□□□□ -0.75
CHD4-208	ENST00000540960	INHA	P05111	366 aa		10.39	□□□□□ -0.75
CHD4-208	ENST00000540960	IREB2	P48200	963 aa	Known RBP	10.39	□□□□□ -0.75
CHD4-208	ENST00000540960	DACT2	Q5SW24	774 aa		10.39	□□□□□ -0.75
CHD4-208	ENST00000540960	ASB2	Q96Q27	587 aa		10.39	□□□□□ -0.75
CHD4-208	ENST00000540960	P2RX7	Q99572	595 aa	Known RBP	10.39	□□□□□ -0.75
CHD4-208	ENST00000540960	MIS18A	Q9NYP9	233 aa		10.39	□□□□□ -0.75
CHD4-208	ENST00000540960	AOX1	Q06278	1338 aa		10.38	□□□□□ -0.75
CHD4-208	ENST00000540960	FAM205A	Q6ZU69	1335 aa		10.38	□□□□□ -0.75
CHD4-208	ENST00000540960	ADCY3	O60266	1144 aa		10.38	□□□□□ -0.75
CHD4-208	ENST00000540960	HOXD10	P28358	340 aa		10.38	□□□□□ -0.75
CHD4-208	ENST00000540960	GTF2A2	P52657	109 aa		10.38	□□□□□ -0.75
CHD4-208	ENST00000540960	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	10.38	□□□□□ -0.75
CHD4-208	ENST00000540960	OGFOD1	Q8N543	542 aa		10.38	□□□□□ -0.75
CHD4-208	ENST00000540960	SLAIN1	Q8ND83	568 aa		10.38	□□□□□ -0.75
CHD4-208	ENST00000540960	ZBTB47	Q9UFB7	747 aa	Predicted RBP	10.38	□□□□□ -0.75
CHD4-208	ENST00000540960	NLRP10	Q86W26	655 aa		10.37	□□□□□ -0.75
CHD4-208	ENST00000540960	DOCK3	Q8IZD9	2030 aa		10.37	□□□□□ -0.75
CHD4-208	ENST00000540960	TMEM57	Q8N5G2	664 aa		10.37	□□□□□ -0.75
CHD4-208	ENST00000540960	TSPYL6	Q8N831	410 aa		10.37	□□□□□ -0.75
CHD4-208	ENST00000540960	PPM1E	Q8WY54	764 aa		10.37	□□□□□ -0.75
CHD4-208	ENST00000540960	ZBTB40	Q9NUA8	1239 aa		10.37	□□□□□ -0.75
CHD4-208	ENST00000540960	PODXL2	Q9NZ53	605 aa		10.37	□□□□□ -0.75
CHD4-208	ENST00000540960	TRMT112	Q9UI30	125 aa	Known RBP	10.37	□□□□□ -0.75
CHD4-208	ENST00000540960	PFAS	O15067	1338 aa		10.36	□□□□□ -0.75
CHD4-208	ENST00000540960	ECM29	Q5VYK3	1845 aa		10.36	□□□□□ -0.75
CHD4-208	ENST00000540960	ELL2	O00472	640 aa	Predicted RBP	10.36	□□□□□ -0.75

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