RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 TLR7Q9NYK1 1049 aaKnown RBP6.31□□□□□ -1.4
USH1C-210ENST00000534556 CEP126Q9P2H0 1117 aa6.31□□□□□ -1.4
USH1C-210ENST00000534556 FBXO3Q9UK99 471 aa6.31□□□□□ -1.4
USH1C-210ENST00000534556 RCAN3Q9UKA8 241 aa6.31□□□□□ -1.4
USH1C-210ENST00000534556 ABT1Q9ULW3 272 aaKnown RBP6.31□□□□□ -1.4
USH1C-210ENST00000534556 TTF2Q9UNY4 1162 aaKnown RBP6.31□□□□□ -1.4
USH1C-210ENST00000534556 DOCK3Q8IZD9 2030 aa6.3□□□□□ -1.4
USH1C-210ENST00000534556 UBE2Q2LH0YL09 131 aa6.3□□□□□ -1.4
USH1C-210ENST00000534556 CAPN15O75808 1086 aa6.3□□□□□ -1.4
USH1C-210ENST00000534556 IFIT1P09914 478 aaKnown RBP6.3□□□□□ -1.4
USH1C-210ENST00000534556 SLC5A1P13866 664 aa6.3□□□□□ -1.4
USH1C-210ENST00000534556 CRKP46108 304 aa6.3□□□□□ -1.4
USH1C-210ENST00000534556 HUNKP57058 714 aa6.3□□□□□ -1.4
USH1C-210ENST00000534556 GRM1Q13255 1194 aa6.3□□□□□ -1.4
USH1C-210ENST00000534556 RASGRF1Q13972 1273 aa6.3□□□□□ -1.4
USH1C-210ENST00000534556 MVPQ14764 893 aaKnown RBP6.3□□□□□ -1.4
USH1C-210ENST00000534556 DLGAP5Q15398 846 aa6.3□□□□□ -1.4
USH1C-210ENST00000534556 DIXDC1Q155Q3 683 aa6.3□□□□□ -1.4
USH1C-210ENST00000534556 SPDYE2Q495Y8 402 aa6.3□□□□□ -1.4
USH1C-210ENST00000534556 NBPF12Q5TAG4 269 aaPredicted RBP6.3□□□□□ -1.4
USH1C-210ENST00000534556 CCDC102BQ68D86 513 aa6.3□□□□□ -1.4
USH1C-210ENST00000534556 APOBEC3HQ6NTF7 200 aaKnown RBP6.3□□□□□ -1.4
USH1C-210ENST00000534556 ZBTB40Q9NUA8 1239 aa6.3□□□□□ -1.4
USH1C-210ENST00000534556 ZNF70Q9UC06 446 aaPredicted RBP6.3□□□□□ -1.4
USH1C-210ENST00000534556 TSKSQ9UJT2 592 aa6.3□□□□□ -1.4
USH1C-210ENST00000534556 NOP58Q9Y2X3 529 aaKnown RBP6.3□□□□□ -1.4
USH1C-210ENST00000534556 MYH8P13535 1937 aa6.3□□□□□ -1.4
USH1C-210ENST00000534556 DOCK1Q14185 1865 aa6.3□□□□□ -1.4
USH1C-210ENST00000534556 BRCA2P51587 3418 aa6.29□□□□□ -1.4
USH1C-210ENST00000534556 ZBTB22O15209 634 aa6.29□□□□□ -1.4
USH1C-210ENST00000534556 MGAMO43451 1857 aa6.29□□□□□ -1.4
USH1C-210ENST00000534556 USP2O75604 605 aaPredicted RBP6.29□□□□□ -1.4
USH1C-210ENST00000534556 GJA5P36382 358 aa6.29□□□□□ -1.4
USH1C-210ENST00000534556 MCAMP43121 646 aa6.29□□□□□ -1.4
USH1C-210ENST00000534556 PRKG1Q13976 671 aa6.29□□□□□ -1.4
USH1C-210ENST00000534556 CAVIN4Q5BKX8 364 aa6.29□□□□□ -1.4
USH1C-210ENST00000534556 DDX60LQ5H9U9 1706 aaKnown RBP6.29□□□□□ -1.4
USH1C-210ENST00000534556 TBC1D9Q6ZT07 1266 aa6.29□□□□□ -1.4
USH1C-210ENST00000534556 RASAL3Q86YV0 1011 aa6.29□□□□□ -1.4
USH1C-210ENST00000534556 SULF1Q8IWU6 871 aa6.29□□□□□ -1.4
USH1C-210ENST00000534556 ZFPM1Q8IX07 1006 aa6.29□□□□□ -1.4
USH1C-210ENST00000534556 FTSJ3Q8IY81 847 aaKnown RBP6.29□□□□□ -1.4
USH1C-210ENST00000534556 OGFOD1Q8N543 542 aa6.29□□□□□ -1.4
USH1C-210ENST00000534556 EAF2Q96CJ1 260 aaPredicted RBP6.29□□□□□ -1.4
USH1C-210ENST00000534556 HHIPL1Q96JK4 782 aa6.29□□□□□ -1.4
USH1C-210ENST00000534556 CLMNQ96JQ2 1002 aa6.29□□□□□ -1.4
USH1C-210ENST00000534556 DBNDD2Q9BQY9 259 aa6.29□□□□□ -1.4
USH1C-210ENST00000534556 DEFB129Q9H1M3 183 aa6.29□□□□□ -1.4
USH1C-210ENST00000534556 HMG20BQ9P0W2 317 aa6.29□□□□□ -1.4
USH1C-210ENST00000534556 SERPINA10Q9UK55 444 aa6.29□□□□□ -1.4
USH1C-210ENST00000534556 EXOC6BQ9Y2D4 811 aa6.29□□□□□ -1.4
USH1C-210ENST00000534556 NDUFB9Q9Y6M9 179 aa6.29□□□□□ -1.4
USH1C-210ENST00000534556 RFX7Q2KHR2 1363 aa6.29□□□□□ -1.4
USH1C-210ENST00000534556 NAV1Q8NEY1 1877 aa6.28□□□□□ -1.4
USH1C-210ENST00000534556 TCP10L2B9ZVM9 353 aa6.28□□□□□ -1.4
USH1C-210ENST00000534556 SURF6O75683 361 aaKnown RBP6.28□□□□□ -1.4
USH1C-210ENST00000534556 SLC10A3P09131 477 aa6.28□□□□□ -1.4
USH1C-210ENST00000534556 HSPA8P11142 646 aaKnown RBP6.28□□□□□ -1.4
USH1C-210ENST00000534556 ARID4AP29374 1257 aaPredicted RBP6.28□□□□□ -1.4
USH1C-210ENST00000534556 RBM5P52756 815 aaKnown RBP eCLIP6.28□□□□□ -1.4
USH1C-210ENST00000534556 NFIAQ12857 509 aa6.28□□□□□ -1.4
USH1C-210ENST00000534556 RASA3Q14644 834 aa6.28□□□□□ -1.4
USH1C-210ENST00000534556 TNNI3KQ59H18 835 aa6.28□□□□□ -1.4
USH1C-210ENST00000534556 LDLRAD1Q5T700 205 aa6.28□□□□□ -1.4
USH1C-210ENST00000534556 RGMBQ6NW40 437 aa6.28□□□□□ -1.4
USH1C-210ENST00000534556 VPS37DQ86XT2 251 aa6.28□□□□□ -1.4
USH1C-210ENST00000534556 C2orf69Q8N8R5 385 aa6.28□□□□□ -1.4
USH1C-210ENST00000534556 YTHDC1Q96MU7 727 aaKnown RBP6.28□□□□□ -1.4
USH1C-210ENST00000534556 ZDHHC15Q96MV8 337 aa6.28□□□□□ -1.4
USH1C-210ENST00000534556 NEUROD6Q96NK8 337 aa6.28□□□□□ -1.4
USH1C-210ENST00000534556 CSRNP1Q96S65 589 aa6.28□□□□□ -1.4
USH1C-210ENST00000534556 TMEM39BQ9GZU3 492 aa6.28□□□□□ -1.4
USH1C-210ENST00000534556 CCDC8Q9H0W5 538 aaPredicted RBP6.28□□□□□ -1.4
USH1C-210ENST00000534556 VEZTQ9HBM0 779 aa6.28□□□□□ -1.4
USH1C-210ENST00000534556 SNRKQ9NRH2 765 aa6.28□□□□□ -1.4
USH1C-210ENST00000534556 FAM198AQ9UFP1 575 aa6.28□□□□□ -1.4
USH1C-210ENST00000534556 DBNLQ9UJU6 430 aaKnown RBP6.28□□□□□ -1.4
USH1C-210ENST00000534556 HDAC9Q9UKV0 1011 aa6.28□□□□□ -1.4
USH1C-210ENST00000534556 DAGLAQ9Y4D2 1042 aa6.28□□□□□ -1.4
USH1C-210ENST00000534556 FPGT-TNNI3KV9GXZ4 949 aa6.28□□□□□ -1.4
USH1C-210ENST00000534556 MKI67P46013 3256 aaKnown RBP6.28□□□□□ -1.4
USH1C-210ENST00000534556 SALL1Q9NSC2 1324 aa6.27□□□□□ -1.41
USH1C-210ENST00000534556 FRAT2O75474 233 aaPredicted RBP6.27□□□□□ -1.41
USH1C-210ENST00000534556 MMP14P50281 582 aa6.27□□□□□ -1.41
USH1C-210ENST00000534556 ZNF157P51786 506 aaPredicted RBP6.27□□□□□ -1.41
USH1C-210ENST00000534556 LBX1P52954 281 aa6.27□□□□□ -1.41
USH1C-210ENST00000534556 HDLBPQ00341 1268 aaKnown RBP6.27□□□□□ -1.41
USH1C-210ENST00000534556 KIF23Q02241 960 aaPredicted RBP6.27□□□□□ -1.41
USH1C-210ENST00000534556 G3BP1Q13283 466 aaKnown RBP eCLIP6.27□□□□□ -1.41
USH1C-210ENST00000534556 CDC42EP5Q6NZY7 148 aa6.27□□□□□ -1.41
USH1C-210ENST00000534556 HHIPL2Q6UWX4 724 aa6.27□□□□□ -1.41
USH1C-210ENST00000534556 PAXIP1Q6ZW49 1069 aaPredicted RBP6.27□□□□□ -1.41
USH1C-210ENST00000534556 SH3BP5LQ7L8J4 393 aa6.27□□□□□ -1.41
USH1C-210ENST00000534556 ADGRA1Q86SQ6 560 aa6.27□□□□□ -1.41
USH1C-210ENST00000534556 APOBEC3FQ8IUX4 373 aaKnown RBP6.27□□□□□ -1.41
USH1C-210ENST00000534556 WDR66Q8TBY9 1149 aa6.27□□□□□ -1.41
USH1C-210ENST00000534556 TBC1D22AQ8WUA7 517 aa6.27□□□□□ -1.41
USH1C-210ENST00000534556 CNKSR2Q8WXI2 1034 aa6.27□□□□□ -1.41
USH1C-210ENST00000534556 MRIQ9BWK5 157 aa6.27□□□□□ -1.41
USH1C-210ENST00000534556 R3HDMLQ9H3Y0 253 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms