RNA–Protein interactions for RNA: ENST00000520878.5

CLK4-206, Transcript of CDC like kinase 4, humanhuman

TSL 1 (best)

Gene CLK4, Length 3,722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-206ENST00000520878 ALG1Q9BT22 464 aa13.26□□□□□ -0.29
CLK4-206ENST00000520878 CAMTA2O94983 1202 aa13.26□□□□□ -0.29
CLK4-206ENST00000520878 MARCKSP29966 332 aaPredicted RBP13.26□□□□□ -0.29
CLK4-206ENST00000520878 SAFBQ15424 915 aaKnown RBP eCLIP13.26□□□□□ -0.29
CLK4-206ENST00000520878 TSGA10IPQ3SY00 556 aa13.26□□□□□ -0.29
CLK4-206ENST00000520878 CCDC39Q9UFE4 941 aa13.26□□□□□ -0.29
CLK4-206ENST00000520878 WTIPA6NIX2 430 aaPredicted RBP13.25□□□□□ -0.29
CLK4-206ENST00000520878 NAA16Q6N069 864 aaPredicted RBP13.25□□□□□ -0.29
CLK4-206ENST00000520878 IFNL3Q8IZI9 196 aa13.25□□□□□ -0.29
CLK4-206ENST00000520878 ANO8Q9HCE9 1232 aaPredicted RBP13.25□□□□□ -0.29
CLK4-206ENST00000520878 ISM2Q6H9L7 571 aa13.25□□□□□ -0.29
CLK4-206ENST00000520878 ANGEL1Q9UNK9 670 aaKnown RBP13.25□□□□□ -0.29
CLK4-206ENST00000520878 USP28Q96RU2 1077 aa13.25□□□□□ -0.29
CLK4-206ENST00000520878 MAGEB6P1A0A0J9YX57 407 aa13.24□□□□□ -0.29
CLK4-206ENST00000520878 SPATA31A5Q5VU36 1347 aa13.24□□□□□ -0.29
CLK4-206ENST00000520878 SPATA31A7Q8IWB4 1347 aa13.24□□□□□ -0.29
CLK4-206ENST00000520878 G3V3G9 751 aa13.24□□□□□ -0.29
CLK4-206ENST00000520878 BIN1O00499 593 aa13.24□□□□□ -0.29
CLK4-206ENST00000520878 NR1I2O75469 434 aa13.24□□□□□ -0.29
CLK4-206ENST00000520878 RPS8P62241 208 aaKnown RBP13.24□□□□□ -0.29
CLK4-206ENST00000520878 UBE3CQ15386 1083 aa13.24□□□□□ -0.29
CLK4-206ENST00000520878 DCAF8Q5TAQ9 597 aa13.24□□□□□ -0.29
CLK4-206ENST00000520878 TBC1D9BQ66K14 1250 aa13.24□□□□□ -0.29
CLK4-206ENST00000520878 TRIM22Q8IYM9 498 aa13.24□□□□□ -0.29
CLK4-206ENST00000520878 CELF1Q92879 486 aaKnown RBP13.24□□□□□ -0.29
CLK4-206ENST00000520878 AIFM3Q96NN9 605 aa13.24□□□□□ -0.29
CLK4-206ENST00000520878 CDKL5O76039 1030 aa13.24□□□□□ -0.29
CLK4-206ENST00000520878 ANO6Q4KMQ2 910 aa13.24□□□□□ -0.29
CLK4-206ENST00000520878 LUZP1Q86V48 1076 aa13.24□□□□□ -0.29
CLK4-206ENST00000520878 LINC00116Q8NCU8 138 aa13.24□□□□□ -0.29
CLK4-206ENST00000520878 ZNF274Q96GC6 653 aaPredicted RBP13.24□□□□□ -0.29
CLK4-206ENST00000520878 LLPHQ9BRT6 129 aaKnown RBP13.24□□□□□ -0.29
CLK4-206ENST00000520878 R3HCC1Q9Y3T6 440 aaKnown RBP13.24□□□□□ -0.29
CLK4-206ENST00000520878 A0A087WWV3 80 aa13.23□□□□□ -0.29
CLK4-206ENST00000520878 WTAPQ15007 396 aa13.23□□□□□ -0.29
CLK4-206ENST00000520878 DZIP1Q86YF9 867 aaKnown RBP13.23□□□□□ -0.29
CLK4-206ENST00000520878 TBC1D10CQ8IV04 446 aa13.23□□□□□ -0.29
CLK4-206ENST00000520878 LCORLQ8N3X6 602 aa13.23□□□□□ -0.29
CLK4-206ENST00000520878 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.23□□□□□ -0.29
CLK4-206ENST00000520878 DNAJC25Q9H1X3 360 aa13.23□□□□□ -0.29
CLK4-206ENST00000520878 A0A1B0GVL5 298 aa13.23□□□□□ -0.29
CLK4-206ENST00000520878 PATL2C9JE40 543 aaKnown RBP13.23□□□□□ -0.29
CLK4-206ENST00000520878 TRAPPC3LQ5T215 181 aa13.23□□□□□ -0.29
CLK4-206ENST00000520878 NOL10Q9BSC4 688 aaKnown RBP13.23□□□□□ -0.29
CLK4-206ENST00000520878 DDX19AQ9NUU7 478 aaKnown RBP13.23□□□□□ -0.29
CLK4-206ENST00000520878 PHRF1Q9P1Y6 1649 aaKnown RBP13.23□□□□□ -0.29
CLK4-206ENST00000520878 EXOSC10Q01780 885 aaKnown RBP13.23□□□□□ -0.29
CLK4-206ENST00000520878 TYRO3Q06418 890 aa13.23□□□□□ -0.29
CLK4-206ENST00000520878 hCG_1642624A0A1W2PR95 340 aa13.22□□□□□ -0.29
CLK4-206ENST00000520878 STRBPQ96SI9 672 aaKnown RBP13.22□□□□□ -0.29
CLK4-206ENST00000520878 ZNF165P49910 485 aa13.22□□□□□ -0.29
CLK4-206ENST00000520878 SSRP1Q08945 709 aaKnown RBP13.22□□□□□ -0.29
CLK4-206ENST00000520878 TTC12Q9H892 705 aaPredicted RBP13.22□□□□□ -0.29
CLK4-206ENST00000520878 AATFQ9NY61 560 aaKnown RBP eCLIP13.22□□□□□ -0.29
CLK4-206ENST00000520878 USP54Q70EL1 1684 aa13.22□□□□□ -0.29
CLK4-206ENST00000520878 CYP2D7A0A087X1C5 515 aa13.22□□□□□ -0.29
CLK4-206ENST00000520878 DYNLL1P63167 89 aaKnown RBP13.22□□□□□ -0.29
CLK4-206ENST00000520878 ARID3AQ99856 593 aa13.22□□□□□ -0.29
CLK4-206ENST00000520878 SCN11AQ9UI33 1791 aa13.22□□□□□ -0.29
CLK4-206ENST00000520878 GOLGA6L6A8MZA4 724 aa13.21□□□□□ -0.29
CLK4-206ENST00000520878 AEBP2Q6ZN18 517 aaPredicted RBP13.21□□□□□ -0.29
CLK4-206ENST00000520878 FAM196AQ6ZSG2 479 aa13.21□□□□□ -0.29
CLK4-206ENST00000520878 CYB5R4Q7L1T6 521 aa13.21□□□□□ -0.29
CLK4-206ENST00000520878 RPGRQ92834 1020 aaKnown RBP13.21□□□□□ -0.29
CLK4-206ENST00000520878 MRC1P22897 1456 aa13.21□□□□□ -0.29
CLK4-206ENST00000520878 C5P01031 1676 aa13.21□□□□□ -0.29
CLK4-206ENST00000520878 C3orf67Q6ZVT6 689 aa13.21□□□□□ -0.29
CLK4-206ENST00000520878 BCL11BQ9C0K0 894 aaPredicted RBP13.21□□□□□ -0.29
CLK4-206ENST00000520878 NYXQ9GZU5 481 aa13.21□□□□□ -0.29
CLK4-206ENST00000520878 NTSR2O95665 410 aa13.21□□□□□ -0.3
CLK4-206ENST00000520878 HIBADHP31937 336 aaKnown RBP13.21□□□□□ -0.3
CLK4-206ENST00000520878 CLCN1P35523 988 aa13.21□□□□□ -0.3
CLK4-206ENST00000520878 USP5P45974 858 aa13.21□□□□□ -0.3
CLK4-206ENST00000520878 RESTQ13127 1097 aa13.21□□□□□ -0.3
CLK4-206ENST00000520878 IL17RAQ96F46 866 aa13.21□□□□□ -0.3
CLK4-206ENST00000520878 KRT23Q9C075 422 aa13.21□□□□□ -0.3
CLK4-206ENST00000520878 ZSWIM5Q9P217 1185 aa13.21□□□□□ -0.3
CLK4-206ENST00000520878 CTDNEP1O95476 244 aa13.2□□□□□ -0.3
CLK4-206ENST00000520878 AKNAD1Q5T1N1 836 aa13.2□□□□□ -0.3
CLK4-206ENST00000520878 RNF41Q9H4P4 317 aaPredicted RBP13.2□□□□□ -0.3
CLK4-206ENST00000520878 SENP2Q9HC62 589 aa13.2□□□□□ -0.3
CLK4-206ENST00000520878 C6orf229H3BNL8 230 aa13.2□□□□□ -0.3
CLK4-206ENST00000520878 RAD21O60216 631 aa13.2□□□□□ -0.3
CLK4-206ENST00000520878 RTN1Q16799 776 aa13.2□□□□□ -0.3
CLK4-206ENST00000520878 GPR101Q96P66 508 aaPredicted RBP13.2□□□□□ -0.3
CLK4-206ENST00000520878 RFX7Q2KHR2 1363 aa13.19□□□□□ -0.3
CLK4-206ENST00000520878 IQCA1Q86XH1 822 aa13.19□□□□□ -0.3
CLK4-206ENST00000520878 TMEM87AQ8NBN3 555 aa13.19□□□□□ -0.3
CLK4-206ENST00000520878 PGBD1Q96JS3 809 aa13.19□□□□□ -0.3
CLK4-206ENST00000520878 PPP1R9BQ96SB3 815 aa13.19□□□□□ -0.3
CLK4-206ENST00000520878 MINPP1Q9UNW1 487 aa13.19□□□□□ -0.3
CLK4-206ENST00000520878 SPTLC2O15270 562 aa13.19□□□□□ -0.3
CLK4-206ENST00000520878 CREBRFQ8IUR6 639 aa13.19□□□□□ -0.3
CLK4-206ENST00000520878 MB21D2Q8IYB1 491 aaPredicted RBP13.19□□□□□ -0.3
CLK4-206ENST00000520878 CNBD1Q8NA66 436 aa13.19□□□□□ -0.3
CLK4-206ENST00000520878 CNNM2Q9H8M5 875 aa13.19□□□□□ -0.3
CLK4-206ENST00000520878 ZNF219Q9P2Y4 722 aaPredicted RBP13.19□□□□□ -0.3
CLK4-206ENST00000520878 KCNJ14Q9UNX9 436 aa13.19□□□□□ -0.3
CLK4-206ENST00000520878 CARMIL3Q8ND23 1372 aa13.19□□□□□ -0.3
CLK4-206ENST00000520878 KCPQ6ZWJ8 1503 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms