RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 ABTB1Q969K4 478 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 NUDT16Q96DE0 195 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 CABP5Q9NP86 173 aa9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 GOLGA6AQ9NYA3 693 aa9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 ZNF219Q9P2Y4 722 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 TRIM35Q9UPQ4 493 aa9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 IARSP41252 1262 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 SSRP1Q08945 709 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 TRAF1Q13077 416 aa9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 SYT10Q6XYQ8 523 aa9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 MICU3Q86XE3 530 aa9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 NEK1Q96PY6 1258 aa9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 TXNDC9O14530 226 aa9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 TMCO4Q5TGY1 634 aa9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 PHLDB3Q6NSJ2 640 aa9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 CCDC65Q8IXS2 484 aa9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 STAG1Q8WVM7 1258 aa9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 CDC5LQ99459 802 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 LRRC2Q9BYS8 371 aa9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 PHAXQ9H814 394 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 ODF2LQ9ULJ1 636 aa9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 RIPOR2Q9Y4F9 1068 aa9.83□□□□□ -0.84
LIMCH1-218ENST00000513024 SEC24BO95487 1268 aa9.82□□□□□ -0.84
LIMCH1-218ENST00000513024 EIF6P56537 245 aaKnown RBP9.82□□□□□ -0.84
LIMCH1-218ENST00000513024 NUCB1Q02818 461 aa9.82□□□□□ -0.84
LIMCH1-218ENST00000513024 MUM1Q2TAK8 710 aa9.82□□□□□ -0.84
LIMCH1-218ENST00000513024 MCUR1Q96AQ8 359 aa9.82□□□□□ -0.84
LIMCH1-218ENST00000513024 RASAL2Q9UJF2 1139 aa9.82□□□□□ -0.84
LIMCH1-218ENST00000513024 CCDC194A0A1B0GVG4 234 aa9.82□□□□□ -0.84
LIMCH1-218ENST00000513024 KIF1CO43896 1103 aaKnown RBP9.82□□□□□ -0.84
LIMCH1-218ENST00000513024 RHOXF2BP0C7M4 288 aa9.82□□□□□ -0.84
LIMCH1-218ENST00000513024 PPM1FP49593 454 aaPredicted RBP9.82□□□□□ -0.84
LIMCH1-218ENST00000513024 NLRP5P59047 1200 aa9.82□□□□□ -0.84
LIMCH1-218ENST00000513024 TYRO3Q06418 890 aa9.82□□□□□ -0.84
LIMCH1-218ENST00000513024 RAB3GAP1Q15042 981 aa9.82□□□□□ -0.84
LIMCH1-218ENST00000513024 VSIG1Q86XK7 387 aa9.82□□□□□ -0.84
LIMCH1-218ENST00000513024 ZGPATQ8N5A5 531 aaKnown RBP9.82□□□□□ -0.84
LIMCH1-218ENST00000513024 ARHGEF2Q92974 986 aaKnown RBP9.82□□□□□ -0.84
LIMCH1-218ENST00000513024 EVI5LQ96CN4 794 aa9.82□□□□□ -0.84
LIMCH1-218ENST00000513024 RHOXF2Q9BQY4 288 aa9.82□□□□□ -0.84
LIMCH1-218ENST00000513024 TLDC2A0PJX2 215 aa9.82□□□□□ -0.84
LIMCH1-218ENST00000513024 SMIM23A6NLE4 172 aa9.82□□□□□ -0.84
LIMCH1-218ENST00000513024 CYLC1P35663 651 aaPredicted RBP9.82□□□□□ -0.84
LIMCH1-218ENST00000513024 TCIRG1Q13488 830 aa9.82□□□□□ -0.84
LIMCH1-218ENST00000513024 SLMAPQ14BN4 828 aa9.82□□□□□ -0.84
LIMCH1-218ENST00000513024 SEPT10Q9P0V9 454 aa9.82□□□□□ -0.84
LIMCH1-218ENST00000513024 PUF60Q9UHX1 559 aaKnown RBP9.82□□□□□ -0.84
LIMCH1-218ENST00000513024 SELENOOQ9BVL4 669 aa9.82□□□□□ -0.84
LIMCH1-218ENST00000513024 PLVAPQ9BX97 442 aa9.82□□□□□ -0.84
LIMCH1-218ENST00000513024 RIOK3O14730 519 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 OAS2P29728 719 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 TRIM68Q6AZZ1 485 aa9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 LCA5Q86VQ0 697 aa9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 SPATS2Q86XZ4 545 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 SNX21Q969T3 373 aa9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 MYD88Q99836 296 aa9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 ZSCAN16Q9H4T2 348 aaPredicted RBP9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 CCDC87Q9NVE4 849 aa9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 KARSQ15046 597 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 NYXQ9GZU5 481 aa9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 SNRKQ9NRH2 765 aa9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 MAGI2Q86UL8 1455 aa9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 FRMD3A2A2Y4 597 aa9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 ATP2A2P16615 1042 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 UBA7P41226 1012 aa9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 AFMP43652 599 aa9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 TNNI2P48788 182 aa9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 ICE2Q659A1 982 aa9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 SEC63Q9UGP8 760 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 RTCBQ9Y3I0 505 aaKnown RBP9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 ABCC11Q96J66 1382 aa9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 F13A1P00488 732 aa9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 HDAC1Q13547 482 aaPredicted RBP9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 IQCA1Q86XH1 822 aa9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 CXorf38Q8TB03 319 aa9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 TRIM47Q96LD4 638 aa9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 MKNK2Q9HBH9 465 aa9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 LZTFL1Q9NQ48 299 aa9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 NKIRAS1Q9NYS0 192 aa9.81□□□□□ -0.84
LIMCH1-218ENST00000513024 CREB3O43889 395 aa9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 LIG3P49916 1009 aa9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 KIF5AQ12840 1032 aa9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 TRMT2AQ8IZ69 625 aaKnown RBP9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 GOLGA5Q8TBA6 731 aa9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 KCNK9Q9NPC2 374 aa9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 TRPC5Q9UL62 973 aaPredicted RBP9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 AKAP2Q9Y2D5 859 aa9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 PIK3C2GO75747 1445 aa9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 ACTN2P35609 894 aa9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 NBPF6Q5VWK0 638 aa9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 NBPF5PQ86XG9 351 aaPredicted RBP9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 IFNL2Q8IZJ0 200 aa9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 MRPS27Q92552 414 aaKnown RBP9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 NBPF4Q96M43 638 aa9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 USP21Q9UK80 565 aa9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 MTUS1Q9ULD2 1270 aa9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 SCAF11Q99590 1463 aaKnown RBP9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 OPHN1O60890 802 aa9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 PTCD1O75127 700 aaKnown RBP9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 MARCKSP29966 332 aaPredicted RBP9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms